Wall clock time and date at job start Sun Mar 7 2021 05:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00025 * 2 1 4 4 C 1.38705 * 120.05413 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.03162 * 359.95797 * 4 3 2 6 6 H 1.08997 * 112.84666 * 348.79778 * 5 4 3 7 7 C 1.53775 * 113.61451 * 120.00101 * 5 4 3 8 8 C 1.53777 * 87.08265 * 139.98219 * 7 5 4 9 9 H 1.09005 * 113.61680 * 220.01496 * 8 7 5 10 10 N 1.46501 * 113.61631 * 89.19723 * 8 7 5 11 11 C 1.34779 * 120.00076 * 155.00242 * 10 8 7 12 12 O 1.21593 * 120.00094 * 359.97438 * 11 10 8 13 13 C 1.47574 * 120.00381 * 180.02562 * 11 10 8 14 14 C 1.40202 * 119.82980 * 359.72247 * 13 11 10 15 15 C 1.36233 * 120.37967 * 179.75913 * 14 13 11 16 16 C 1.39881 * 119.96109 * 0.52049 * 15 14 13 17 17 C 1.46257 * 133.84709 * 179.74271 * 16 15 14 18 18 C 1.50702 * 126.48057 * 0.02562 * 17 16 15 19 19 O 1.42900 * 109.47454 * 74.99777 * 18 17 16 20 20 Si 1.86297 * 109.46854 * 195.00051 * 18 17 16 21 21 C 1.34451 * 107.03466 * 179.97438 * 17 16 15 22 22 N 1.36556 * 109.98673 * 359.97438 * 21 17 16 23 23 C 1.37828 * 109.86225 * 0.02562 * 22 21 17 24 24 C 1.38647 * 133.37939 * 180.02562 * 23 22 21 25 25 C 1.53780 * 87.08376 * 334.56533 * 8 7 5 26 26 C 1.38173 * 119.93997 * 179.72484 * 4 3 2 27 27 C 1.38241 * 120.05599 * 0.53472 * 26 4 3 28 28 C 1.38291 * 120.11180 * 359.44059 * 27 26 4 29 29 C 1.38122 * 120.05183 * 0.30261 * 28 27 26 30 30 H 1.08999 * 109.47144 * 59.99791 * 1 2 3 31 31 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47352 * 299.99766 * 1 2 3 33 33 H 1.09005 * 113.61252 * 254.52300 * 7 5 4 34 34 H 1.08996 * 113.61802 * 25.34797 * 7 5 4 35 35 H 0.96997 * 120.00034 * 335.00261 * 10 8 7 36 36 H 1.08002 * 119.81219 * 359.97438 * 14 13 11 37 37 H 1.07998 * 120.02364 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46845 * 314.99508 * 18 17 16 39 39 H 0.96701 * 113.99187 * 60.00084 * 19 18 17 40 40 H 1.48501 * 110.00119 * 58.68078 * 20 18 17 41 41 H 1.48498 * 109.99689 * 179.97438 * 20 18 17 42 42 H 1.08003 * 125.00382 * 180.02562 * 21 17 16 43 43 H 0.97002 * 125.07498 * 180.02562 * 22 21 17 44 44 H 1.07999 * 120.16999 * 0.02562 * 24 23 22 45 45 H 1.09000 * 113.61336 * 270.89167 * 25 8 7 46 46 H 1.08997 * 113.61960 * 139.97752 * 25 8 7 47 47 H 1.08001 * 119.97126 * 180.27071 * 26 4 3 48 48 H 1.08002 * 119.94762 * 179.72634 * 27 26 4 49 49 H 1.07998 * 119.97202 * 180.27812 * 28 27 26 50 50 H 1.08002 * 120.02342 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0222 -0.0002 6 1 3.6593 -0.8702 0.1957 7 6 5.1798 -0.1100 -1.2206 8 6 6.2405 -0.6675 -0.2568 9 1 7.2495 -0.3110 -0.4643 10 7 6.1742 -2.1213 -0.0883 11 6 7.2734 -2.8075 0.2823 12 8 8.3202 -2.2201 0.4765 13 6 7.2069 -4.2720 0.4515 14 6 5.9969 -4.9452 0.2313 15 6 5.9240 -6.2975 0.3795 16 6 7.0582 -7.0203 0.7639 17 6 7.3204 -8.4376 1.0122 18 6 6.3274 -9.5656 0.8997 19 8 6.0887 -9.8543 -0.4793 20 14 7.0104 -11.0804 1.7421 21 6 8.6151 -8.5438 1.3588 22 7 9.2028 -7.3112 1.3520 23 6 8.2788 -6.3539 0.9924 24 6 8.3456 -4.9782 0.8331 25 6 5.5270 0.1167 0.8571 26 6 4.0559 2.5172 -0.0063 27 6 3.3019 3.6758 -0.0003 28 6 1.9208 3.6048 -0.0003 29 6 1.2914 2.3753 0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.8328 -0.8365 -1.9554 34 1 5.4531 0.8461 -1.6670 35 1 5.3393 -2.5899 -0.2436 36 1 5.1184 -4.3890 -0.0608 37 1 4.9900 -6.8107 0.2045 38 1 5.3918 -9.2750 1.3774 39 1 6.8795 -10.1205 -0.9680 40 1 7.2928 -10.7839 3.1696 41 1 6.0403 -12.1999 1.6387 42 1 9.1167 -9.4680 1.6053 43 1 10.1320 -7.1354 1.5680 44 1 9.2756 -4.4565 1.0042 45 1 5.8962 1.1350 0.9795 46 1 5.4601 -0.4266 1.7996 47 1 5.1344 2.5753 -0.0111 48 1 3.7922 4.6381 -0.0004 49 1 1.3339 4.5114 -0.0002 50 1 0.2128 2.3204 0.0006 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_12335838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:46 Heat of formation + Delta-G solvation = 16.065417 kcal Electronic energy + Delta-G solvation = -33173.992869 eV Core-core repulsion = 28713.494522 eV Total energy + Delta-G solvation = -4460.498347 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.46693 -41.75759 -40.88956 -39.49021 -38.10144 -37.81744 -37.42694 -34.69157 -33.24262 -32.00281 -31.05336 -30.72367 -30.43293 -28.16335 -26.70148 -26.60270 -26.22842 -24.69309 -23.65451 -23.10466 -22.56996 -21.62614 -20.78457 -20.13811 -19.46699 -19.05678 -18.32792 -17.58572 -17.43901 -17.08594 -16.95719 -16.68453 -16.64487 -16.23684 -16.01116 -15.84570 -15.55069 -15.36087 -15.21148 -15.05838 -15.02713 -14.75195 -14.74713 -14.37715 -14.25296 -14.02457 -14.01014 -13.48763 -13.18540 -13.07991 -12.99196 -12.76170 -12.65242 -12.30741 -12.28085 -12.26591 -12.02750 -11.92574 -11.76676 -11.65936 -11.16576 -11.14350 -10.78607 -10.28841 -10.16921 -9.76416 -9.36911 -9.07662 -8.78786 -4.96844 -0.33235 0.34293 0.35960 0.48628 1.39158 1.42236 1.71880 1.87987 1.89966 2.06156 2.24551 2.37857 2.75887 2.85161 3.45924 3.57999 3.63011 3.66522 3.71387 3.74950 3.89310 3.91524 3.92993 3.99387 4.09034 4.12354 4.19109 4.29929 4.31565 4.35752 4.45297 4.48335 4.49586 4.51582 4.58692 4.64171 4.69854 4.72588 4.76866 4.78158 4.85174 4.93896 4.95987 5.00372 5.10013 5.16142 5.20582 5.40292 5.40757 5.44324 5.51576 5.59210 5.61463 5.65914 5.85633 5.97648 6.43353 6.43997 6.55455 6.91425 7.10596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.097 0.903 7 C -0.124 4.124 8 C 0.117 3.883 9 H 0.092 0.908 10 N -0.696 5.696 11 C 0.565 3.435 12 O -0.579 6.579 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.086 4.086 16 C -0.081 4.081 17 C -0.236 4.236 18 C -0.040 4.040 19 O -0.561 6.561 20 Si 0.795 3.205 21 C 0.097 3.903 22 N -0.576 5.576 23 C 0.066 3.934 24 C -0.065 4.065 25 C -0.141 4.141 26 C -0.086 4.086 27 C -0.163 4.163 28 C -0.093 4.093 29 C -0.217 4.217 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.393 0.607 40 H -0.285 1.285 41 H -0.306 1.306 42 H 0.220 0.780 43 H 0.435 0.565 44 H 0.130 0.870 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.144 0.856 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -2.584 -0.996 2.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.116 0.884 7 C -0.162 4.162 8 C 0.011 3.989 9 H 0.110 0.890 10 N -0.347 5.347 11 C 0.354 3.646 12 O -0.460 6.460 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.105 4.105 16 C -0.086 4.086 17 C -0.243 4.243 18 C -0.149 4.149 19 O -0.369 6.369 20 Si 0.701 3.299 21 C -0.032 4.032 22 N -0.180 5.180 23 C -0.040 4.040 24 C -0.086 4.086 25 C -0.179 4.179 26 C -0.104 4.104 27 C -0.181 4.181 28 C -0.111 4.111 29 C -0.236 4.236 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.251 0.749 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.243 0.757 40 H -0.212 1.212 41 H -0.234 1.234 42 H 0.236 0.764 43 H 0.276 0.724 44 H 0.148 0.852 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.161 0.839 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.084 -2.761 -0.045 2.763 hybrid contribution -0.875 0.813 0.208 1.212 sum -0.791 -1.948 0.163 2.109 Atomic orbital electron populations 1.23274 0.76953 1.05298 1.01922 1.86020 1.22844 1.26870 1.88718 1.19104 0.92297 0.84713 0.97224 1.19237 0.90285 0.95959 1.06169 1.21325 0.93688 0.95432 0.97157 0.88433 1.23383 0.94162 1.02557 0.96056 1.21867 1.00120 0.79471 0.97415 0.88978 1.45495 1.12770 1.07541 1.68892 1.18363 0.83285 0.87269 0.75682 1.90757 1.31162 1.71426 1.52704 1.19433 0.95175 0.91931 1.07662 1.20871 0.96657 0.94468 1.00783 1.20382 0.97847 0.93406 0.98858 1.19579 0.93226 0.93831 1.02012 1.20854 0.95957 0.93012 1.14464 1.24551 0.99584 1.02374 0.88421 1.86463 1.39111 1.90187 1.21162 0.94064 0.85165 0.73019 0.77661 1.22368 0.92596 0.89423 0.98790 1.41813 1.12408 1.04926 1.58815 1.18105 0.90549 0.90540 1.04849 1.20138 0.98891 0.90418 0.99148 1.23574 0.95299 1.01495 0.97535 1.21106 1.00883 0.90855 0.97541 1.21362 0.94138 0.99226 1.03344 1.21261 0.95193 0.97559 0.97090 1.21490 1.00890 0.92448 1.08761 0.91981 0.86663 0.92167 0.89978 0.87619 0.74921 0.83503 0.84622 0.88699 0.75707 1.21191 1.23393 0.76367 0.72418 0.85170 0.87911 0.91860 0.83861 0.84233 0.84182 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.27 9.43 -92.48 -0.87 -2.14 16 3 C 0.11 0.52 6.66 22.50 0.15 0.67 16 4 C -0.12 -0.39 5.30 -19.77 -0.10 -0.50 16 5 C -0.06 -0.07 3.75 -11.01 -0.04 -0.11 16 6 H 0.10 0.20 7.32 -2.39 -0.02 0.18 16 7 C -0.12 0.10 7.29 31.12 0.23 0.32 16 8 C 0.12 0.28 4.32 45.52 0.20 0.47 16 9 H 0.09 0.52 7.46 -2.38 -0.02 0.50 16 10 N -0.70 -1.98 5.21 -443.15 -2.31 -4.29 16 11 C 0.56 4.97 7.76 86.71 0.67 5.64 16 12 O -0.58 -9.38 15.91 -4.01 -0.06 -9.44 16 13 C -0.14 -0.88 5.87 -20.08 -0.12 -1.00 16 14 C -0.11 -0.28 9.46 22.28 0.21 -0.07 16 15 C -0.09 -0.33 10.03 22.20 0.22 -0.11 16 16 C -0.08 -0.37 6.35 -20.14 -0.13 -0.50 16 17 C -0.24 0.04 5.57 -18.64 -0.10 -0.07 16 18 C -0.04 0.04 3.06 71.24 0.22 0.26 16 19 O -0.56 -0.17 12.88 -148.98 -1.92 -2.09 16 20 Si 0.80 -3.71 30.75 68.60 2.11 -1.60 16 21 C 0.10 -0.54 10.43 83.09 0.87 0.33 16 22 N -0.58 1.89 6.07 -187.72 -1.14 0.75 16 23 C 0.07 0.25 7.26 38.96 0.28 0.53 16 24 C -0.06 -0.41 9.61 22.63 0.22 -0.20 16 25 C -0.14 -0.23 7.26 31.12 0.23 -0.01 16 26 C -0.09 -0.12 8.60 22.25 0.19 0.07 16 27 C -0.16 -0.17 10.04 22.28 0.22 0.06 16 28 C -0.09 -0.13 10.04 22.25 0.22 0.10 16 29 C -0.22 -0.56 9.04 22.36 0.20 -0.36 16 30 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 31 H 0.12 -0.70 8.14 -2.38 -0.02 -0.72 16 32 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 33 H 0.08 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.11 -0.22 7.71 -2.39 -0.02 -0.23 16 35 H 0.41 -0.78 6.69 -92.71 -0.62 -1.40 16 36 H 0.15 -0.46 6.36 -2.91 -0.02 -0.48 16 37 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 38 H 0.10 0.15 7.96 -2.39 -0.02 0.14 16 39 H 0.39 -3.18 8.70 -74.06 -0.64 -3.83 16 40 H -0.28 -0.05 7.11 99.48 0.71 0.65 16 41 H -0.31 -1.20 7.11 99.48 0.71 -0.49 16 42 H 0.22 -3.22 6.35 -2.91 -0.02 -3.24 16 43 H 0.44 -3.92 8.96 -92.71 -0.83 -4.75 16 44 H 0.13 0.86 7.62 -2.91 -0.02 0.84 16 45 H 0.10 -0.01 6.32 -2.39 -0.02 -0.02 16 46 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.14 -0.32 6.67 -2.91 -0.02 -0.34 16 48 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 49 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 50 H 0.14 -0.14 6.30 -2.91 -0.02 -0.16 16 Total: 0.00 -26.35 410.35 -0.28 -26.63 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -1.03 Total: -14.39 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 4.95 Total: 6.58 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -3.45 Total: -3.55 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -2.85 Total: -13.67 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.11 Total: -1.60 kcal Total: -26.35 -0.28 -26.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12335838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.692 kcal (2) G-P(sol) polarization free energy of solvation -26.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds