Wall clock time and date at job start Sun Mar 7 2021 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99882 * 2 1 4 4 C 1.40140 * 120.14993 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19215 * 0.02562 * 4 3 2 6 6 O 1.21595 * 119.99754 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99879 * 180.02562 * 5 4 3 8 8 C 1.46506 * 120.00002 * 180.02562 * 7 5 4 9 9 H 1.09010 * 112.84693 * 336.19083 * 8 7 5 10 10 C 1.53777 * 113.61869 * 107.49475 * 8 7 5 11 11 C 1.53787 * 87.07912 * 89.11736 * 10 8 7 12 12 H 1.08994 * 113.68973 * 270.87347 * 11 10 8 13 13 C 1.50699 * 113.61301 * 139.98195 * 11 10 8 14 14 C 1.38705 * 120.02704 * 142.50307 * 13 11 10 15 15 O 1.35900 * 120.05670 * 359.95515 * 14 13 11 16 16 C 1.42900 * 117.00014 * 180.02562 * 15 14 13 17 17 C 1.38752 * 119.88923 * 179.97438 * 14 13 11 18 18 C 1.38127 * 119.94298 * 359.97438 * 17 14 13 19 19 C 1.38280 * 120.05649 * 359.97438 * 18 17 14 20 20 C 1.38171 * 120.02636 * 322.22848 * 13 11 10 21 21 C 1.53777 * 87.07974 * 25.43331 * 11 10 8 22 22 C 1.39709 * 119.61483 * 179.97438 * 4 3 2 23 23 C 1.37787 * 119.91202 * 0.02562 * 22 4 3 24 24 C 1.50698 * 119.85053 * 179.97438 * 23 22 4 25 25 O 1.42900 * 109.47249 * 299.99921 * 24 23 22 26 26 Si 1.86308 * 109.47002 * 179.97438 * 24 23 22 27 27 C 1.38555 * 120.29710 * 0.02562 * 23 22 4 28 28 C 1.38057 * 120.39108 * 359.70480 * 27 23 22 29 29 H 1.08998 * 109.47043 * 59.99872 * 1 2 3 30 30 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47144 * 300.00273 * 1 2 3 32 32 H 0.97000 * 120.00406 * 359.97438 * 7 5 4 33 33 H 1.08997 * 113.61460 * 203.66322 * 10 8 7 34 34 H 1.08999 * 113.61165 * 334.57308 * 10 8 7 35 35 H 1.08995 * 109.47188 * 60.00122 * 16 15 14 36 36 H 1.08996 * 109.47132 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.46969 * 299.99649 * 16 15 14 38 38 H 1.08005 * 120.02996 * 180.02562 * 17 14 13 39 39 H 1.08004 * 119.97198 * 180.02562 * 18 17 14 40 40 H 1.07999 * 119.94431 * 179.97438 * 19 18 17 41 41 H 1.07997 * 119.97227 * 0.02562 * 20 13 11 42 42 H 1.09005 * 113.61843 * 220.01999 * 21 11 10 43 43 H 1.09001 * 113.61830 * 89.11839 * 21 11 10 44 44 H 1.07997 * 120.04356 * 179.97438 * 22 4 3 45 45 H 1.08998 * 109.46772 * 60.00405 * 24 23 22 46 46 H 0.96696 * 113.99915 * 180.02562 * 25 24 23 47 47 H 1.48504 * 109.99482 * 60.00215 * 26 24 23 48 48 H 1.48493 * 109.99758 * 181.31861 * 26 24 23 49 49 H 1.08001 * 119.80257 * 179.97438 * 27 23 22 50 50 H 1.07998 * 119.95881 * 180.29838 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2551 0.0532 0.0005 6 8 3.7095 -1.0334 0.0005 7 7 5.6005 0.1319 0.0016 8 6 6.4058 -1.0920 0.0010 9 1 5.8704 -1.9512 0.4054 10 6 7.0992 -1.3726 -1.3425 11 6 8.2776 -0.5340 -0.8198 12 1 8.1915 0.5293 -1.0433 13 6 9.6274 -1.1001 -1.1785 14 6 10.6711 -0.2489 -1.5104 15 8 10.4776 1.0963 -1.5135 16 6 11.5969 1.9118 -1.8658 17 6 11.9128 -0.7732 -1.8396 18 6 12.1069 -2.1407 -1.8356 19 6 11.0651 -2.9871 -1.5033 20 6 9.8279 -2.4671 -1.1714 21 6 7.8108 -0.9052 0.5976 22 6 4.0667 2.5364 0.0000 23 6 3.3037 3.6838 -0.0005 24 6 3.9767 5.0321 -0.0005 25 8 4.7917 5.1577 1.1665 26 14 2.6824 6.3722 -0.0021 27 6 1.9205 3.6034 0.0000 28 6 1.2924 2.3740 -0.0051 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 6.0357 0.9987 0.0020 33 1 7.3453 -2.4233 -1.4958 34 1 6.5913 -0.9265 -2.1976 35 1 11.9261 1.6610 -2.8742 36 1 11.3071 2.9619 -1.8294 37 1 12.4111 1.7346 -1.1631 38 1 12.7272 -0.1125 -2.0980 39 1 13.0734 -2.5493 -2.0914 40 1 11.2187 -4.0561 -1.5012 41 1 9.0166 -3.1301 -0.9092 42 1 7.8772 -0.0819 1.3089 43 1 8.2513 -1.8282 0.9747 44 1 5.1446 2.6039 0.0008 45 1 4.5990 5.1275 -0.8903 46 1 5.2560 6.0033 1.2328 47 1 1.8268 6.2532 1.2058 48 1 3.3331 7.7066 -0.0342 49 1 1.3303 4.5078 0.0000 50 1 0.2138 2.3194 -0.0095 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_12496546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:06:34 Heat of formation + Delta-G solvation = -47.803630 kcal Electronic energy + Delta-G solvation = -33298.246729 eV Core-core repulsion = 28838.174813 eV Total energy + Delta-G solvation = -4460.071917 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.83989 -41.40632 -40.35519 -39.11183 -38.96926 -37.96856 -37.30941 -34.48394 -32.71173 -31.96222 -31.46082 -31.03466 -28.57352 -28.23472 -26.62654 -26.34322 -26.13801 -24.96821 -23.22224 -22.78314 -22.21995 -21.33935 -20.04976 -19.32836 -19.05764 -18.62060 -18.09423 -17.55735 -17.31149 -16.78075 -16.73473 -16.67587 -16.54672 -16.15440 -15.81377 -15.73271 -15.63266 -15.35739 -15.16127 -15.00304 -14.67886 -14.42961 -14.20803 -14.06370 -13.93010 -13.84443 -13.55223 -13.39068 -13.04012 -13.02633 -12.98403 -12.76920 -12.51158 -12.35029 -12.26725 -12.05695 -12.00077 -11.76412 -11.66727 -11.59240 -11.07320 -10.73443 -10.48733 -10.14832 -9.88184 -9.70656 -9.19845 -9.02608 -5.03417 -0.17409 0.26460 0.38920 0.53979 1.21227 1.53082 1.89352 1.93867 2.21027 2.28650 2.34006 2.76189 2.81044 3.24767 3.54126 3.59282 3.64212 3.71475 3.77454 3.82849 3.91477 4.03239 4.05850 4.10062 4.15133 4.18695 4.20739 4.22968 4.23988 4.25723 4.29594 4.45509 4.48242 4.50295 4.55820 4.62781 4.69550 4.71795 4.77350 4.80848 4.91414 4.97106 5.01582 5.10009 5.12416 5.13143 5.26400 5.32991 5.44051 5.54893 5.56513 5.64585 5.76580 5.86320 6.34479 6.38191 6.45462 6.65665 7.43793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.193 3.807 4 C -0.174 4.174 5 C 0.565 3.435 6 O -0.515 6.515 7 N -0.713 5.713 8 C 0.123 3.877 9 H 0.106 0.894 10 C -0.144 4.144 11 C -0.064 4.064 12 H 0.101 0.899 13 C -0.102 4.102 14 C 0.129 3.871 15 O -0.315 6.315 16 C 0.027 3.973 17 C -0.207 4.207 18 C -0.084 4.084 19 C -0.154 4.154 20 C -0.080 4.080 21 C -0.136 4.136 22 C -0.018 4.018 23 C -0.122 4.122 24 C -0.070 4.070 25 O -0.536 6.536 26 Si 0.678 3.322 27 C -0.045 4.045 28 C -0.213 4.213 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.399 0.601 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.380 0.620 47 H -0.254 1.254 48 H -0.260 1.260 49 H 0.134 0.866 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 4.093 -2.687 4.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.144 3.856 4 C -0.178 4.178 5 C 0.353 3.647 6 O -0.390 6.390 7 N -0.365 5.365 8 C 0.017 3.983 9 H 0.124 0.876 10 C -0.183 4.183 11 C -0.082 4.082 12 H 0.120 0.880 13 C -0.102 4.102 14 C 0.084 3.916 15 O -0.229 6.229 16 C -0.068 4.068 17 C -0.226 4.226 18 C -0.102 4.102 19 C -0.172 4.172 20 C -0.098 4.098 21 C -0.174 4.174 22 C -0.037 4.037 23 C -0.122 4.122 24 C -0.180 4.180 25 O -0.344 6.344 26 Si 0.580 3.420 27 C -0.063 4.063 28 C -0.232 4.232 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.152 0.848 45 H 0.096 0.904 46 H 0.228 0.772 47 H -0.179 1.179 48 H -0.185 1.185 49 H 0.152 0.848 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.140 3.292 -2.108 3.912 hybrid contribution 1.518 1.037 0.459 1.895 sum 1.378 4.329 -1.649 4.833 Atomic orbital electron populations 1.23232 0.78248 1.04714 1.01445 1.86383 1.21150 1.25165 1.86217 1.19074 0.90906 0.85054 0.90590 1.19301 0.90898 0.93801 1.13825 1.17924 0.81751 0.88658 0.76409 1.90841 1.71451 1.28560 1.48161 1.45570 1.05711 1.09122 1.76138 1.21807 0.91037 0.88444 0.96980 0.87612 1.23587 0.95844 1.00955 0.97902 1.21406 0.90295 1.00196 0.96298 0.88049 1.19053 0.94208 0.92312 1.04661 1.18860 0.93488 0.82819 0.96432 1.86047 1.38068 1.14439 1.84302 1.23072 0.88785 0.94889 1.00088 1.21258 0.96662 0.96750 1.07914 1.20970 0.99091 0.92647 0.97530 1.21081 0.93283 1.00034 1.02814 1.20891 0.97377 0.93629 0.97896 1.23442 0.94631 1.03081 0.96284 1.20941 0.99834 0.89882 0.93012 1.19014 0.93027 0.93710 1.06494 1.24699 1.01259 1.01765 0.90238 1.86587 1.63413 1.41052 1.43326 0.95162 0.81621 0.76389 0.88873 1.20921 0.93489 0.97394 0.94463 1.21196 1.00729 0.91423 1.09854 0.92244 0.87701 0.92372 0.76550 0.88738 0.90745 0.92621 0.88143 0.92611 0.85506 0.85796 0.85771 0.85186 0.90602 0.88443 0.84823 0.90445 0.77166 1.17874 1.18515 0.84845 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.16 8.57 -40.54 -0.35 -1.51 16 3 C 0.19 0.62 6.70 -38.69 -0.26 0.36 16 4 C -0.17 -0.57 5.89 -104.84 -0.62 -1.19 16 5 C 0.56 2.60 7.76 -12.47 -0.10 2.50 16 6 O -0.51 -4.22 14.76 -16.60 -0.24 -4.46 16 7 N -0.71 -1.18 5.21 -54.05 -0.28 -1.46 16 8 C 0.12 0.16 4.32 -67.12 -0.29 -0.13 16 9 H 0.11 0.29 7.46 -51.92 -0.39 -0.09 16 10 C -0.14 -0.11 7.25 -25.92 -0.19 -0.30 16 11 C -0.06 -0.04 3.75 -90.96 -0.34 -0.38 16 12 H 0.10 0.10 7.32 -51.93 -0.38 -0.28 16 13 C -0.10 -0.17 5.30 -104.47 -0.55 -0.73 16 14 C 0.13 0.28 6.66 -39.22 -0.26 0.02 16 15 O -0.32 -0.54 9.43 -19.43 -0.18 -0.72 16 16 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 17 C -0.21 -0.27 9.04 -39.43 -0.36 -0.63 16 18 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 19 C -0.15 -0.12 10.04 -39.56 -0.40 -0.52 16 20 C -0.08 -0.07 8.60 -39.60 -0.34 -0.41 16 21 C -0.14 -0.01 7.29 -25.92 -0.19 -0.19 16 22 C -0.02 -0.02 9.09 -39.20 -0.36 -0.38 16 23 C -0.12 -0.08 5.42 -104.67 -0.57 -0.64 16 24 C -0.07 0.07 2.80 36.00 0.10 0.17 16 25 O -0.54 -0.09 12.74 -35.23 -0.45 -0.54 16 26 Si 0.68 -1.11 29.77 -169.99 -5.06 -6.17 16 27 C -0.04 0.00 8.66 -39.53 -0.34 -0.34 16 28 C -0.21 -0.13 9.03 -39.47 -0.36 -0.48 16 29 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 30 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.06 -0.10 7.67 -51.93 -0.40 -0.49 16 32 H 0.40 -0.18 6.73 -40.82 -0.27 -0.45 16 33 H 0.09 0.01 6.32 -51.93 -0.33 -0.32 16 34 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 36 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 37 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 38 H 0.13 -0.06 6.30 -52.48 -0.33 -0.39 16 39 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 41 H 0.13 -0.09 6.67 -52.49 -0.35 -0.44 16 42 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.10 -0.04 7.71 -51.93 -0.40 -0.44 16 44 H 0.13 -0.09 6.40 -52.49 -0.34 -0.43 16 45 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 46 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 47 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 48 H -0.26 -0.12 7.11 56.52 0.40 0.28 16 49 H 0.13 -0.30 4.85 -52.49 -0.25 -0.56 16 50 H 0.14 -0.27 6.30 -52.49 -0.33 -0.60 16 LS Contribution 404.08 15.07 6.09 6.09 Total: 0.00 -10.01 404.08 -11.02 -21.03 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -6.71 Total: -10.46 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.83 Total: -1.81 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -0.28 Total: -1.46 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.22 Total: -7.23 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.06 Total: -6.17 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -10.01 -11.02 -21.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12496546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.772 kcal (2) G-P(sol) polarization free energy of solvation -10.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds