Wall clock time and date at job start Sun Mar 7 2021 05:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99882 * 2 1 4 4 C 1.40140 * 120.14993 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19215 * 0.02562 * 4 3 2 6 6 O 1.21595 * 119.99754 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99879 * 180.02562 * 5 4 3 8 8 C 1.46506 * 120.00002 * 180.02562 * 7 5 4 9 9 H 1.09010 * 112.84693 * 336.19083 * 8 7 5 10 10 C 1.53777 * 113.61869 * 107.49475 * 8 7 5 11 11 C 1.53787 * 87.07912 * 89.11736 * 10 8 7 12 12 H 1.08994 * 113.68973 * 270.87347 * 11 10 8 13 13 C 1.50699 * 113.61301 * 139.98195 * 11 10 8 14 14 C 1.38705 * 120.02704 * 142.50307 * 13 11 10 15 15 O 1.35900 * 120.05670 * 359.95515 * 14 13 11 16 16 C 1.42900 * 117.00014 * 180.02562 * 15 14 13 17 17 C 1.38752 * 119.88923 * 179.97438 * 14 13 11 18 18 C 1.38127 * 119.94298 * 359.97438 * 17 14 13 19 19 C 1.38280 * 120.05649 * 359.97438 * 18 17 14 20 20 C 1.38171 * 120.02636 * 322.22848 * 13 11 10 21 21 C 1.53777 * 87.07974 * 25.43331 * 11 10 8 22 22 C 1.39709 * 119.61483 * 179.97438 * 4 3 2 23 23 C 1.37787 * 119.91202 * 0.02562 * 22 4 3 24 24 C 1.50698 * 119.85053 * 179.97438 * 23 22 4 25 25 O 1.42900 * 109.47249 * 299.99921 * 24 23 22 26 26 Si 1.86308 * 109.47002 * 179.97438 * 24 23 22 27 27 C 1.38555 * 120.29710 * 0.02562 * 23 22 4 28 28 C 1.38057 * 120.39108 * 359.70480 * 27 23 22 29 29 H 1.08998 * 109.47043 * 59.99872 * 1 2 3 30 30 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47144 * 300.00273 * 1 2 3 32 32 H 0.97000 * 120.00406 * 359.97438 * 7 5 4 33 33 H 1.08997 * 113.61460 * 203.66322 * 10 8 7 34 34 H 1.08999 * 113.61165 * 334.57308 * 10 8 7 35 35 H 1.08995 * 109.47188 * 60.00122 * 16 15 14 36 36 H 1.08996 * 109.47132 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.46969 * 299.99649 * 16 15 14 38 38 H 1.08005 * 120.02996 * 180.02562 * 17 14 13 39 39 H 1.08004 * 119.97198 * 180.02562 * 18 17 14 40 40 H 1.07999 * 119.94431 * 179.97438 * 19 18 17 41 41 H 1.07997 * 119.97227 * 0.02562 * 20 13 11 42 42 H 1.09005 * 113.61843 * 220.01999 * 21 11 10 43 43 H 1.09001 * 113.61830 * 89.11839 * 21 11 10 44 44 H 1.07997 * 120.04356 * 179.97438 * 22 4 3 45 45 H 1.08998 * 109.46772 * 60.00405 * 24 23 22 46 46 H 0.96696 * 113.99915 * 180.02562 * 25 24 23 47 47 H 1.48504 * 109.99482 * 60.00215 * 26 24 23 48 48 H 1.48493 * 109.99758 * 181.31861 * 26 24 23 49 49 H 1.08001 * 119.80257 * 179.97438 * 27 23 22 50 50 H 1.07998 * 119.95881 * 180.29838 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2551 0.0532 0.0005 6 8 3.7095 -1.0334 0.0005 7 7 5.6005 0.1319 0.0016 8 6 6.4058 -1.0920 0.0010 9 1 5.8704 -1.9512 0.4054 10 6 7.0992 -1.3726 -1.3425 11 6 8.2776 -0.5340 -0.8198 12 1 8.1915 0.5293 -1.0433 13 6 9.6274 -1.1001 -1.1785 14 6 10.6711 -0.2489 -1.5104 15 8 10.4776 1.0963 -1.5135 16 6 11.5969 1.9118 -1.8658 17 6 11.9128 -0.7732 -1.8396 18 6 12.1069 -2.1407 -1.8356 19 6 11.0651 -2.9871 -1.5033 20 6 9.8279 -2.4671 -1.1714 21 6 7.8108 -0.9052 0.5976 22 6 4.0667 2.5364 0.0000 23 6 3.3037 3.6838 -0.0005 24 6 3.9767 5.0321 -0.0005 25 8 4.7917 5.1577 1.1665 26 14 2.6824 6.3722 -0.0021 27 6 1.9205 3.6034 0.0000 28 6 1.2924 2.3740 -0.0051 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 6.0357 0.9987 0.0020 33 1 7.3453 -2.4233 -1.4958 34 1 6.5913 -0.9265 -2.1976 35 1 11.9261 1.6610 -2.8742 36 1 11.3071 2.9619 -1.8294 37 1 12.4111 1.7346 -1.1631 38 1 12.7272 -0.1125 -2.0980 39 1 13.0734 -2.5493 -2.0914 40 1 11.2187 -4.0561 -1.5012 41 1 9.0166 -3.1301 -0.9092 42 1 7.8772 -0.0819 1.3089 43 1 8.2513 -1.8282 0.9747 44 1 5.1446 2.6039 0.0008 45 1 4.5990 5.1275 -0.8903 46 1 5.2560 6.0033 1.2328 47 1 1.8268 6.2532 1.2058 48 1 3.3331 7.7066 -0.0342 49 1 1.3303 4.5078 0.0000 50 1 0.2138 2.3194 -0.0095 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_12496546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:06:32 Heat of formation + Delta-G solvation = -45.989223 kcal Electronic energy + Delta-G solvation = -33298.168051 eV Core-core repulsion = 28838.174813 eV Total energy + Delta-G solvation = -4459.993238 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.96438 -41.45993 -40.46852 -39.19587 -39.09793 -38.01975 -37.30614 -34.71353 -32.78108 -31.99028 -31.51828 -31.04997 -28.54621 -28.15326 -26.70238 -26.44220 -26.11282 -25.06959 -23.25316 -22.82010 -22.29327 -21.49992 -20.16146 -19.41006 -19.07868 -18.57028 -18.20223 -17.63423 -17.34767 -16.85949 -16.82124 -16.65991 -16.61982 -16.19651 -15.88519 -15.86133 -15.69408 -15.35449 -15.19592 -15.08777 -14.70291 -14.52896 -14.28510 -14.05755 -13.98376 -13.82563 -13.57068 -13.44366 -13.12136 -13.00319 -12.96948 -12.75797 -12.50173 -12.37322 -12.28710 -12.02174 -12.01890 -11.76969 -11.75309 -11.65323 -11.16256 -10.98470 -10.46683 -10.28329 -10.03298 -9.75986 -9.27585 -9.07446 -4.90544 -0.27641 0.21326 0.34447 0.48797 1.32040 1.62518 1.74669 1.97650 2.04451 2.26880 2.38295 2.64288 2.76166 3.35422 3.46014 3.52838 3.65433 3.66683 3.72400 3.81707 3.91892 3.99487 4.04286 4.09787 4.14986 4.19131 4.30034 4.32001 4.35212 4.36661 4.37424 4.45704 4.48704 4.54634 4.62956 4.68184 4.70280 4.72920 4.73699 4.77548 4.83497 4.91263 4.95477 5.00041 5.08969 5.10122 5.17651 5.29296 5.40709 5.48296 5.55037 5.59426 5.66493 5.85791 6.29814 6.44414 6.49127 6.62532 7.18802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.171 3.829 4 C -0.198 4.198 5 C 0.560 3.440 6 O -0.561 6.561 7 N -0.701 5.701 8 C 0.118 3.882 9 H 0.088 0.912 10 C -0.139 4.139 11 C -0.055 4.055 12 H 0.098 0.902 13 C -0.116 4.116 14 C 0.112 3.888 15 O -0.330 6.330 16 C 0.020 3.980 17 C -0.216 4.216 18 C -0.093 4.093 19 C -0.163 4.163 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.018 4.018 23 C -0.130 4.130 24 C -0.078 4.078 25 O -0.557 6.557 26 Si 0.759 3.241 27 C -0.044 4.044 28 C -0.211 4.211 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.148 0.852 45 H 0.100 0.900 46 H 0.396 0.604 47 H -0.297 1.297 48 H -0.287 1.287 49 H 0.157 0.843 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 5.342 -3.085 6.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.349 3.651 6 O -0.440 6.440 7 N -0.353 5.353 8 C 0.012 3.988 9 H 0.107 0.893 10 C -0.178 4.178 11 C -0.074 4.074 12 H 0.116 0.884 13 C -0.117 4.117 14 C 0.067 3.933 15 O -0.244 6.244 16 C -0.075 4.075 17 C -0.235 4.235 18 C -0.111 4.111 19 C -0.181 4.181 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.037 4.037 23 C -0.130 4.130 24 C -0.187 4.187 25 O -0.368 6.368 26 Si 0.665 3.335 27 C -0.062 4.062 28 C -0.229 4.229 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.165 0.835 45 H 0.118 0.882 46 H 0.246 0.754 47 H -0.224 1.224 48 H -0.214 1.214 49 H 0.174 0.826 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.366 4.566 -2.524 5.230 hybrid contribution 1.402 0.710 0.606 1.684 sum 1.768 5.276 -1.918 5.885 Atomic orbital electron populations 1.23461 0.76480 1.05525 1.02891 1.86337 1.23250 1.26225 1.86549 1.19382 0.91237 0.85619 0.91467 1.19392 0.91268 0.93873 1.15606 1.18264 0.82468 0.88655 0.75686 1.90801 1.72378 1.30177 1.50688 1.45496 1.05029 1.09839 1.74923 1.21836 0.91332 0.87880 0.97731 0.89339 1.23559 0.95707 1.01447 0.97043 1.21299 0.89863 0.99820 0.96382 0.88396 1.19231 0.94487 0.92776 1.05182 1.19091 0.94019 0.83218 0.96954 1.86020 1.39483 1.14437 1.84486 1.23278 0.88395 0.95274 1.00508 1.21492 0.96855 0.97306 1.07853 1.21264 0.99945 0.92641 0.97235 1.21357 0.93234 1.00974 1.02511 1.21102 0.97982 0.93611 0.97742 1.23388 0.93218 1.03539 0.96126 1.21084 1.00621 0.89347 0.92619 1.19312 0.93504 0.94274 1.05929 1.24898 1.01960 1.00946 0.90858 1.86543 1.63832 1.42522 1.43855 0.94277 0.79054 0.73920 0.86295 1.21240 0.93605 0.98037 0.93277 1.21458 1.01852 0.90693 1.08893 0.90520 0.87358 0.91082 0.75288 0.87998 0.91747 0.92097 0.86603 0.92042 0.84184 0.84130 0.84259 0.83998 0.90239 0.87718 0.83485 0.88180 0.75376 1.22426 1.21443 0.82618 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.18 8.57 -68.78 -0.59 -3.77 16 3 C 0.17 1.31 6.70 22.85 0.15 1.46 16 4 C -0.20 -1.58 5.89 -20.01 -0.12 -1.70 16 5 C 0.56 6.41 7.76 86.70 0.67 7.08 16 6 O -0.56 -10.93 14.76 16.90 0.25 -10.68 16 7 N -0.70 -3.40 5.21 -443.19 -2.31 -5.71 16 8 C 0.12 0.49 4.32 45.51 0.20 0.68 16 9 H 0.09 0.70 7.46 -2.38 -0.02 0.69 16 10 C -0.14 -0.37 7.25 31.12 0.23 -0.15 16 11 C -0.06 -0.11 3.75 -11.01 -0.04 -0.15 16 12 H 0.10 0.25 7.32 -2.39 -0.02 0.23 16 13 C -0.12 -0.45 5.30 -19.77 -0.10 -0.55 16 14 C 0.11 0.53 6.66 22.50 0.15 0.68 16 15 O -0.33 -1.21 9.43 -92.43 -0.87 -2.08 16 16 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 17 C -0.22 -0.55 9.04 22.37 0.20 -0.35 16 18 C -0.09 -0.13 10.04 22.25 0.22 0.09 16 19 C -0.16 -0.22 10.04 22.28 0.22 0.00 16 20 C -0.09 -0.17 8.60 22.26 0.19 0.02 16 21 C -0.12 -0.08 7.29 31.12 0.23 0.14 16 22 C -0.02 -0.05 9.09 22.52 0.20 0.16 16 23 C -0.13 -0.08 5.42 -19.90 -0.11 -0.19 16 24 C -0.08 0.25 2.80 71.24 0.20 0.45 16 25 O -0.56 0.31 12.74 -148.98 -1.90 -1.59 16 26 Si 0.76 -3.29 29.77 68.60 2.04 -1.24 16 27 C -0.04 0.04 8.66 22.30 0.19 0.23 16 28 C -0.21 -0.20 9.03 22.34 0.20 0.00 16 29 H 0.08 -0.31 7.65 -2.39 -0.02 -0.33 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 32 H 0.41 0.01 6.73 -92.71 -0.62 -0.61 16 33 H 0.10 0.10 6.32 -2.39 -0.02 0.09 16 34 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 36 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.06 -0.27 7.66 -2.39 -0.02 -0.29 16 38 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.14 -0.20 6.67 -2.91 -0.02 -0.21 16 42 H 0.08 0.01 8.14 -2.38 -0.02 -0.01 16 43 H 0.10 -0.06 7.71 -2.39 -0.02 -0.08 16 44 H 0.15 -0.19 6.40 -2.91 -0.02 -0.21 16 45 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 46 H 0.40 -3.27 8.74 -74.06 -0.65 -3.92 16 47 H -0.30 -0.85 7.11 99.48 0.71 -0.14 16 48 H -0.29 -0.06 7.11 99.48 0.71 0.64 16 49 H 0.16 -0.95 4.85 -2.91 -0.01 -0.96 16 50 H 0.17 -0.79 6.30 -2.91 -0.02 -0.81 16 Total: 0.00 -25.38 404.08 1.51 -23.87 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: -0.23 Total: -8.89 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.12 Total: 10.08 kcal Atomic # 7 Polarization: -3.40 SS G_CDS: -2.31 Total: -5.71 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -3.11 Total: -18.11 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.04 Total: -1.24 kcal Total: -25.38 1.51 -23.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12496546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.115 kcal (2) G-P(sol) polarization free energy of solvation -25.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds