Wall clock time and date at job start Sun Mar 7 2021 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35909 * 117.00339 * 2 1 4 4 C 1.38701 * 120.05780 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.02952 * 359.97438 * 4 3 2 6 6 H 1.08996 * 112.84596 * 10.91749 * 5 4 3 7 7 C 1.53779 * 113.61381 * 142.22473 * 5 4 3 8 8 C 1.53781 * 87.07986 * 139.98295 * 7 5 4 9 9 H 1.09001 * 113.69291 * 220.00679 * 8 7 5 10 10 N 1.46499 * 113.61531 * 89.11560 * 8 7 5 11 11 C 1.34781 * 120.00044 * 107.50035 * 10 8 7 12 12 O 1.21620 * 119.99967 * 0.02562 * 11 10 8 13 13 C 1.47293 * 119.99899 * 180.02562 * 11 10 8 14 14 C 1.40375 * 120.04161 * 180.02562 * 13 11 10 15 15 O 1.35672 * 120.13981 * 359.95380 * 14 13 11 16 16 C 1.38320 * 119.72073 * 179.97438 * 14 13 11 17 17 C 1.39567 * 119.81294 * 359.97438 * 16 14 13 18 18 C 1.47569 * 119.95512 * 180.02562 * 17 16 14 19 19 C 1.36109 * 125.94733 * 180.02562 * 18 17 16 20 20 C 1.40795 * 106.73337 * 180.24168 * 19 18 17 21 21 C 1.34832 * 107.04964 * 359.60553 * 20 19 18 22 22 C 1.50703 * 125.65079 * 180.12168 * 21 20 19 23 23 O 1.42899 * 109.46912 * 65.29772 * 22 21 20 24 24 Si 1.86299 * 109.47007 * 185.29505 * 22 21 20 25 25 O 1.34226 * 108.69723 * 0.39803 * 21 20 19 26 26 C 1.39960 * 120.09280 * 0.27112 * 17 16 14 27 27 C 1.36391 * 120.27668 * 359.45024 * 26 17 16 28 28 C 1.53778 * 87.08165 * 334.56679 * 8 7 5 29 29 C 1.38169 * 119.94321 * 179.72171 * 4 3 2 30 30 C 1.38241 * 120.05716 * 0.23360 * 29 4 3 31 31 C 1.38291 * 120.10731 * 0.02562 * 30 29 4 32 32 C 1.38115 * 120.05913 * 0.02562 * 31 30 29 33 33 H 1.09006 * 109.47104 * 300.00040 * 1 2 3 34 34 H 1.09000 * 109.47128 * 59.99862 * 1 2 3 35 35 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 36 36 H 1.08996 * 113.61591 * 25.43324 * 7 5 4 37 37 H 1.09002 * 113.61601 * 254.52982 * 7 5 4 38 38 H 0.96996 * 119.99967 * 287.50320 * 10 8 7 39 39 H 0.96702 * 113.99681 * 270.02453 * 15 14 13 40 40 H 1.07991 * 120.09057 * 179.97438 * 16 14 13 41 41 H 1.08002 * 126.62860 * 359.97242 * 19 18 17 42 42 H 1.08005 * 126.47516 * 179.72335 * 20 19 18 43 43 H 1.08996 * 109.47408 * 305.29452 * 22 21 20 44 44 H 0.96704 * 114.00116 * 59.99927 * 23 22 21 45 45 H 1.48499 * 110.00127 * 180.02562 * 24 22 21 46 46 H 1.48502 * 110.00406 * 301.32218 * 24 22 21 47 47 H 1.08005 * 119.86446 * 179.70531 * 26 17 16 48 48 H 1.07994 * 119.90879 * 180.24879 * 27 26 17 49 49 H 1.08999 * 113.61477 * 139.97990 * 28 8 7 50 50 H 1.09001 * 113.61392 * 270.88508 * 28 8 7 51 51 H 1.07999 * 119.97081 * 180.25212 * 29 4 3 52 52 H 1.07997 * 119.94602 * 180.02562 * 30 29 4 53 53 H 1.08005 * 119.96564 * 179.97438 * 31 30 29 54 54 H 1.07998 * 120.02930 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0221 0.0017 6 1 3.6584 -0.8709 -0.1882 7 6 5.5235 0.1134 -0.8609 8 6 6.2415 -0.6666 0.2530 9 1 7.2515 -0.3106 0.4560 10 7 6.1732 -2.1208 0.0889 11 6 7.2705 -2.8092 -0.2836 12 8 8.3173 -2.2232 -0.4831 13 6 7.2017 -4.2712 -0.4491 14 6 8.3441 -4.9891 -0.8366 15 8 9.5137 -4.3390 -1.0605 16 6 8.2721 -6.3619 -0.9895 17 6 7.0654 -7.0236 -0.7573 18 6 6.9853 -8.4883 -0.9190 19 6 5.8767 -9.2540 -0.7258 20 6 6.2538 -10.5857 -0.9841 21 6 7.5576 -10.5679 -1.3273 22 6 8.3863 -11.7724 -1.6927 23 8 7.8889 -12.3427 -2.9049 24 14 10.1604 -11.2565 -1.9313 25 8 7.9968 -9.3002 -1.2836 26 6 5.9300 -6.2995 -0.3763 27 6 5.9981 -4.9464 -0.2189 28 6 5.1847 -0.1055 1.2190 29 6 4.0560 2.5171 -0.0053 30 6 3.3020 3.6758 -0.0068 31 6 1.9209 3.6047 -0.0019 32 6 1.2914 2.3754 0.0050 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 5.8923 1.1311 -0.9888 37 1 5.4529 -0.4336 -1.8012 38 1 5.3384 -2.5882 0.2484 39 1 9.6312 -4.0444 -1.9740 40 1 9.1472 -6.9200 -1.2878 41 1 4.8983 -8.9075 -0.4275 42 1 5.6183 -11.4567 -0.9212 43 1 8.3269 -12.5105 -0.8928 44 1 7.9118 -11.7405 -3.6612 45 1 10.9880 -12.4354 -2.2926 46 1 10.2510 -10.2269 -2.9975 47 1 4.9969 -6.8148 -0.2021 48 1 5.1193 -4.3941 0.0792 49 1 4.8405 -0.8291 1.9579 50 1 5.4609 0.8524 1.6598 51 1 5.1344 2.5752 -0.0090 52 1 3.7923 4.6380 -0.0117 53 1 1.3340 4.5114 -0.0026 54 1 0.2129 2.3204 0.0092 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_12807986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:06:52 Heat of formation + Delta-G solvation = -34.204810 kcal Electronic energy + Delta-G solvation = -38926.859538 eV Core-core repulsion = 33764.016697 eV Total energy + Delta-G solvation = -5162.842841 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -43.74435 -41.90208 -41.30033 -40.23158 -39.03779 -38.21224 -38.01168 -37.83929 -34.83087 -34.19719 -33.31108 -31.81943 -31.27402 -31.03883 -30.41365 -28.14983 -27.22733 -26.67729 -26.07630 -24.52148 -24.06361 -23.17727 -22.71783 -22.34952 -22.04962 -21.36973 -20.20910 -19.64422 -19.15379 -18.75337 -18.58834 -17.72754 -17.50261 -17.37980 -17.18073 -16.78201 -16.66577 -16.63058 -16.34855 -16.10586 -16.02703 -15.82562 -15.51070 -15.33882 -15.07980 -15.04509 -14.65467 -14.44030 -14.33506 -14.24129 -14.00365 -13.95786 -13.79748 -13.60192 -13.56606 -13.43046 -13.11704 -12.97805 -12.95817 -12.74432 -12.70952 -12.28077 -12.19381 -12.00732 -11.91364 -11.72962 -11.62666 -11.14735 -11.13450 -10.94203 -10.84697 -10.63075 -10.11271 -9.95713 -9.74972 -9.06178 -9.01902 -4.98744 -0.79925 0.14121 0.35594 0.49887 0.63924 1.12303 1.42889 1.44495 1.68896 1.87548 1.91417 2.01367 2.39455 2.63298 2.77270 3.01356 3.21133 3.35726 3.48296 3.59536 3.64490 3.68487 3.75091 3.86766 3.93465 3.98734 4.00356 4.01617 4.11769 4.20263 4.22315 4.33887 4.36653 4.38380 4.43082 4.47256 4.50107 4.61735 4.66459 4.70121 4.71806 4.75276 4.78929 4.80452 4.85165 4.90701 4.96300 5.02548 5.06324 5.09944 5.11498 5.18448 5.21731 5.41831 5.43050 5.48063 5.53233 5.60618 5.67836 5.86593 5.95837 6.31304 6.45385 6.46402 6.69251 7.15718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.115 4.115 5 C -0.056 4.056 6 H 0.102 0.898 7 C -0.140 4.140 8 C 0.118 3.882 9 H 0.088 0.912 10 N -0.696 5.696 11 C 0.559 3.441 12 O -0.561 6.561 13 C -0.179 4.179 14 C 0.162 3.838 15 O -0.494 6.494 16 C -0.152 4.152 17 C 0.026 3.974 18 C 0.005 3.995 19 C -0.172 4.172 20 C -0.181 4.181 21 C -0.051 4.051 22 C -0.032 4.032 23 O -0.534 6.534 24 Si 0.760 3.240 25 O -0.176 6.176 26 C -0.109 4.109 27 C -0.052 4.052 28 C -0.125 4.125 29 C -0.087 4.087 30 C -0.164 4.164 31 C -0.094 4.094 32 C -0.218 4.218 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.408 0.592 40 H 0.139 0.861 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.390 0.610 45 H -0.280 1.280 46 H -0.295 1.295 47 H 0.169 0.831 48 H 0.169 0.831 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.142 0.858 52 H 0.138 0.862 53 H 0.139 0.861 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 0.044 1.909 8.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.116 4.116 5 C -0.075 4.075 6 H 0.120 0.880 7 C -0.179 4.179 8 C 0.012 3.988 9 H 0.106 0.894 10 N -0.348 5.348 11 C 0.347 3.653 12 O -0.441 6.441 13 C -0.182 4.182 14 C 0.115 3.885 15 O -0.307 6.307 16 C -0.171 4.171 17 C 0.025 3.975 18 C -0.044 4.044 19 C -0.191 4.191 20 C -0.200 4.200 21 C -0.101 4.101 22 C -0.142 4.142 23 O -0.342 6.342 24 Si 0.665 3.335 25 O -0.074 6.074 26 C -0.127 4.127 27 C -0.070 4.070 28 C -0.162 4.162 29 C -0.105 4.105 30 C -0.182 4.182 31 C -0.112 4.112 32 C -0.236 4.236 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.268 0.732 40 H 0.157 0.843 41 H 0.199 0.801 42 H 0.185 0.815 43 H 0.175 0.825 44 H 0.239 0.761 45 H -0.206 1.206 46 H -0.222 1.222 47 H 0.187 0.813 48 H 0.186 0.814 49 H 0.102 0.898 50 H 0.120 0.880 51 H 0.160 0.840 52 H 0.156 0.844 53 H 0.157 0.843 54 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.977 -0.193 2.120 6.345 hybrid contribution -1.238 0.201 -1.634 2.060 sum -7.215 0.009 0.486 7.231 Atomic orbital electron populations 1.23278 0.76940 1.05385 1.01861 1.86011 1.22824 1.26734 1.88700 1.19082 0.92257 0.84710 0.97145 1.19237 0.90291 0.95970 1.06086 1.21340 0.93637 0.95466 0.97032 0.87987 1.23563 0.95298 1.01418 0.97587 1.21831 0.99948 0.79584 0.97393 0.89354 1.45475 1.12794 1.07371 1.69200 1.18226 0.83515 0.87007 0.76534 1.90817 1.30698 1.71178 1.51365 1.20511 0.95421 0.93023 1.09290 1.18480 0.84688 0.89822 0.95499 1.84728 1.34464 1.76003 1.35530 1.21569 0.98702 0.93515 1.03284 1.17946 0.94286 0.87124 0.98120 1.20569 0.86790 0.90223 1.06831 1.22248 0.99996 0.92344 1.04478 1.21839 0.95017 0.98910 1.04228 1.23160 0.96178 0.83773 1.07022 1.24449 1.06847 0.92371 0.90522 1.86639 1.85418 1.42897 1.19284 0.93623 0.73797 0.77428 0.88687 1.83936 1.38145 1.17018 1.68322 1.21042 0.98337 0.93697 0.99618 1.21150 0.96266 0.94366 0.95244 1.23385 0.94220 1.02489 0.96156 1.21103 1.00834 0.90947 0.97583 1.21352 0.94163 0.99225 1.03428 1.21252 0.95168 0.97607 0.97156 1.21491 1.00905 0.92467 1.08753 0.92082 0.92251 0.86457 0.88238 0.91616 0.74859 0.73191 0.84348 0.80083 0.81513 0.82540 0.76051 1.20641 1.22211 0.81312 0.81361 0.89778 0.87960 0.83985 0.84403 0.84306 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.51 9.43 -92.53 -0.87 -1.38 16 3 C 0.11 0.33 6.66 22.50 0.15 0.48 16 4 C -0.12 -0.20 5.30 -19.77 -0.10 -0.30 16 5 C -0.06 0.07 3.75 -11.01 -0.04 0.03 16 6 H 0.10 -0.13 7.32 -2.39 -0.02 -0.15 16 7 C -0.14 0.07 7.25 31.12 0.23 0.29 16 8 C 0.12 0.04 4.32 45.52 0.20 0.23 16 9 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 10 N -0.70 0.27 5.21 -443.43 -2.31 -2.04 16 11 C 0.56 3.42 7.75 86.62 0.67 4.09 16 12 O -0.56 -8.11 14.74 16.90 0.25 -7.86 16 13 C -0.18 -0.52 5.89 -19.97 -0.12 -0.63 16 14 C 0.16 0.90 6.71 22.81 0.15 1.05 16 15 O -0.49 -3.96 11.56 -68.89 -0.80 -4.75 16 16 C -0.15 -0.54 9.65 22.61 0.22 -0.32 16 17 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 18 C 0.01 0.01 7.02 24.24 0.17 0.18 16 19 C -0.17 0.27 10.26 22.40 0.23 0.50 16 20 C -0.18 0.08 10.78 22.11 0.24 0.32 16 21 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 22 C -0.03 0.05 2.98 71.24 0.21 0.26 16 23 O -0.53 -0.35 12.88 -148.98 -1.92 -2.27 16 24 Si 0.76 -0.39 32.11 68.60 2.20 1.81 16 25 O -0.18 -0.58 8.79 -6.02 -0.05 -0.64 16 26 C -0.11 0.49 9.48 22.26 0.21 0.70 16 27 C -0.05 0.22 9.47 22.25 0.21 0.43 16 28 C -0.12 0.34 7.29 31.12 0.23 0.56 16 29 C -0.09 -0.03 8.61 22.25 0.19 0.16 16 30 C -0.16 -0.04 10.04 22.28 0.22 0.19 16 31 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 32 C -0.22 -0.28 9.04 22.36 0.20 -0.08 16 33 H 0.06 -0.36 7.65 -2.38 -0.02 -0.37 16 34 H 0.06 -0.33 7.67 -2.39 -0.02 -0.35 16 35 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H 0.10 -0.14 6.31 -2.39 -0.02 -0.16 16 37 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.41 -2.65 6.71 -92.71 -0.62 -3.27 16 39 H 0.41 0.42 9.06 -74.06 -0.67 -0.25 16 40 H 0.14 0.47 7.89 -2.92 -0.02 0.45 16 41 H 0.18 -1.39 7.24 -2.91 -0.02 -1.41 16 42 H 0.17 -0.54 8.06 -2.91 -0.02 -0.57 16 43 H 0.16 -0.86 7.96 -2.39 -0.02 -0.88 16 44 H 0.39 -1.63 8.70 -74.05 -0.64 -2.27 16 45 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 46 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 47 H 0.17 -1.82 6.95 -2.91 -0.02 -1.85 16 48 H 0.17 -1.94 6.38 -2.91 -0.02 -1.96 16 49 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 50 H 0.10 -0.33 7.72 -2.39 -0.02 -0.35 16 51 H 0.14 -0.43 6.66 -2.91 -0.02 -0.45 16 52 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 53 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 54 H 0.14 -0.32 6.30 -2.91 -0.02 -0.34 16 Total: 0.00 -25.98 449.72 0.45 -25.53 By element: Atomic # 1 Polarization: -16.85 SS G_CDS: -0.90 Total: -17.75 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.84 Total: 9.35 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -2.31 Total: -2.04 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -3.39 Total: -16.91 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 2.20 Total: 1.81 kcal Total: -25.98 0.45 -25.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12807986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.674 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds