Wall clock time and date at job start Sun Mar 7 2021 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00297 * 2 1 4 4 C 1.38707 * 120.05888 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.02691 * 359.95471 * 4 3 2 6 6 H 1.08997 * 112.84856 * 11.19390 * 5 4 3 7 7 C 1.53785 * 113.69003 * 142.46090 * 5 4 3 8 8 C 1.53781 * 87.07541 * 139.98999 * 7 5 4 9 9 H 1.09000 * 113.69264 * 220.00598 * 8 7 5 10 10 N 1.46503 * 113.61292 * 89.12044 * 8 7 5 11 11 C 1.34771 * 120.00275 * 107.49832 * 10 8 7 12 12 O 1.21649 * 120.00241 * 359.97438 * 11 10 8 13 13 C 1.47063 * 120.00127 * 180.02562 * 11 10 8 14 14 C 1.35865 * 125.42591 * 179.97438 * 13 11 10 15 15 C 1.41589 * 107.72794 * 180.02562 * 14 13 11 16 16 C 1.40068 * 133.38167 * 179.97438 * 15 14 13 17 17 C 1.36466 * 119.83106 * 180.02562 * 16 15 14 18 18 C 1.38905 * 120.61713 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.67776 * 179.70200 * 18 17 16 20 20 O 1.42901 * 109.46964 * 245.00235 * 19 18 17 21 21 Si 1.86302 * 109.46950 * 5.00089 * 19 18 17 22 22 C 1.37716 * 120.64635 * 359.97438 * 18 17 16 23 23 C 1.39181 * 119.80857 * 359.97438 * 22 18 17 24 24 N 1.37491 * 133.18794 * 179.97438 * 23 22 18 25 25 C 1.53777 * 87.08620 * 334.56710 * 8 7 5 26 26 C 1.38169 * 119.94417 * 180.22646 * 4 3 2 27 27 C 1.38244 * 120.05580 * 359.47930 * 26 4 3 28 28 C 1.38287 * 120.10806 * 0.54169 * 27 26 4 29 29 C 1.38124 * 120.05936 * 359.70790 * 28 27 26 30 30 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47449 * 300.00280 * 1 2 3 32 32 H 1.09005 * 109.47221 * 60.00431 * 1 2 3 33 33 H 1.09006 * 113.61075 * 25.44478 * 7 5 4 34 34 H 1.08994 * 113.61677 * 254.54086 * 7 5 4 35 35 H 0.96999 * 119.99810 * 287.49891 * 10 8 7 36 36 H 1.08000 * 126.13547 * 0.03421 * 14 13 11 37 37 H 1.08003 * 120.08174 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.69218 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47272 * 125.00052 * 19 18 17 40 40 H 0.96700 * 113.99737 * 179.97438 * 20 19 18 41 41 H 1.48504 * 109.99886 * 178.68212 * 21 19 18 42 42 H 1.48500 * 110.00129 * 299.99912 * 21 19 18 43 43 H 1.08001 * 120.09443 * 179.97438 * 22 18 17 44 44 H 0.96999 * 125.60460 * 0.03960 * 24 23 22 45 45 H 1.09007 * 113.61401 * 139.97687 * 25 8 7 46 46 H 1.08998 * 113.61861 * 270.88196 * 25 8 7 47 47 H 1.08003 * 119.96820 * 179.74328 * 26 4 3 48 48 H 1.07991 * 119.94577 * 180.29905 * 27 26 4 49 49 H 1.08001 * 119.97090 * 179.72771 * 28 27 26 50 50 H 1.07998 * 120.02859 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0220 0.0022 6 1 3.6592 -0.8706 -0.1922 7 6 5.5270 0.1130 -0.8554 8 6 6.2396 -0.6693 0.2604 9 1 7.2492 -0.3147 0.4678 10 7 6.1704 -2.1232 0.0940 11 6 7.2683 -2.8123 -0.2751 12 8 8.3166 -2.2271 -0.4706 13 6 7.1986 -4.2717 -0.4427 14 6 8.2328 -5.0725 -0.8102 15 6 7.7522 -6.4035 -0.8565 16 6 8.3495 -7.6318 -1.1668 17 6 7.6089 -8.7772 -1.1231 18 6 6.2650 -8.7377 -0.7736 19 6 5.4654 -10.0145 -0.7387 20 8 4.4504 -9.9685 -1.7435 21 14 6.5929 -11.4623 -1.0606 22 6 5.6550 -7.5425 -0.4643 23 6 6.3896 -6.3609 -0.5007 24 7 6.0712 -5.0468 -0.2512 25 6 5.1798 -0.1083 1.2229 26 6 4.0560 2.5171 0.0053 27 6 3.3019 3.6758 -0.0014 28 6 1.9209 3.6047 -0.0015 29 6 1.2914 2.3753 -0.0011 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 5.8975 1.1305 -0.9804 34 1 5.4595 -0.4325 -1.7966 35 1 5.3344 -2.5899 0.2495 36 1 9.2408 -4.7514 -1.0278 37 1 9.3936 -7.6724 -1.4400 38 1 8.0718 -9.7231 -1.3624 39 1 5.0017 -10.1261 0.2414 40 1 3.8959 -10.7600 -1.7789 41 1 5.8221 -12.7301 -0.9973 42 1 7.2314 -11.3222 -2.3940 43 1 4.6095 -7.5221 -0.1942 44 1 5.1982 -4.7179 0.0145 45 1 4.8318 -0.8325 1.9596 46 1 5.4553 0.8487 1.6662 47 1 5.1344 2.5751 0.0099 48 1 3.7922 4.6380 -0.0026 49 1 1.3340 4.5113 -0.0023 50 1 0.2128 2.3203 -0.0007 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13158378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:08 Heat of formation + Delta-G solvation = 19.744365 kcal Electronic energy + Delta-G solvation = -33064.241100 eV Core-core repulsion = 28603.902285 eV Total energy + Delta-G solvation = -4460.338816 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.73803 -41.72925 -40.78143 -39.48695 -38.81648 -38.06468 -37.08994 -34.82036 -33.33691 -32.04693 -31.07847 -31.03688 -30.44334 -28.21285 -27.26812 -26.73481 -26.01679 -24.43888 -23.35675 -23.00738 -22.57958 -21.94237 -21.28799 -20.25401 -19.60016 -19.06244 -18.54003 -18.04246 -17.40811 -17.22878 -16.97785 -16.71313 -16.67104 -16.47878 -16.33815 -15.79407 -15.41546 -15.35419 -15.26293 -15.02494 -14.99496 -14.81508 -14.64819 -14.33877 -14.28345 -14.05117 -13.88922 -13.53798 -13.50454 -13.20439 -13.01961 -12.80248 -12.72438 -12.33329 -12.31709 -12.13983 -12.05265 -11.82709 -11.71540 -11.67283 -11.42065 -11.20602 -10.97222 -10.45945 -10.29568 -9.78431 -9.34567 -9.09810 -8.83936 -4.87312 -0.38902 0.32523 0.46768 0.51391 0.91968 1.33003 1.63913 1.71550 1.91202 2.00058 2.13918 2.35080 2.71905 2.74093 3.40282 3.42300 3.52298 3.63278 3.64077 3.68046 3.86561 3.89159 3.96346 4.03329 4.07316 4.17028 4.20644 4.29093 4.29601 4.33199 4.42427 4.43195 4.45508 4.46158 4.58505 4.63152 4.67513 4.70409 4.75955 4.79160 4.87104 4.89018 4.97194 4.97422 5.07640 5.09944 5.27941 5.38391 5.38876 5.41692 5.53521 5.56497 5.57391 5.62304 5.83604 5.96462 6.21761 6.39969 6.41328 6.61246 6.90813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.116 4.116 5 C -0.059 4.059 6 H 0.097 0.903 7 C -0.141 4.141 8 C 0.117 3.883 9 H 0.098 0.902 10 N -0.696 5.696 11 C 0.590 3.410 12 O -0.556 6.556 13 C 0.010 3.990 14 C -0.115 4.115 15 C -0.135 4.135 16 C -0.058 4.058 17 C -0.150 4.150 18 C -0.052 4.052 19 C -0.083 4.083 20 O -0.558 6.558 21 Si 0.765 3.235 22 C -0.110 4.110 23 C 0.107 3.893 24 N -0.565 5.565 25 C -0.123 4.123 26 C -0.086 4.086 27 C -0.162 4.162 28 C -0.093 4.093 29 C -0.218 4.218 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.395 0.605 41 H -0.287 1.287 42 H -0.299 1.299 43 H 0.137 0.863 44 H 0.430 0.570 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 -0.795 4.159 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.077 4.077 6 H 0.115 0.885 7 C -0.179 4.179 8 C 0.012 3.988 9 H 0.116 0.884 10 N -0.347 5.347 11 C 0.377 3.623 12 O -0.434 6.434 13 C -0.100 4.100 14 C -0.142 4.142 15 C -0.140 4.140 16 C -0.076 4.076 17 C -0.169 4.169 18 C -0.053 4.053 19 C -0.192 4.192 20 O -0.368 6.368 21 Si 0.671 3.329 22 C -0.131 4.131 23 C -0.003 4.003 24 N -0.171 5.171 25 C -0.161 4.161 26 C -0.103 4.103 27 C -0.181 4.181 28 C -0.111 4.111 29 C -0.236 4.236 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.245 0.755 41 H -0.214 1.214 42 H -0.227 1.227 43 H 0.155 0.845 44 H 0.271 0.729 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.163 0.837 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.725 -0.519 3.475 5.121 hybrid contribution -2.400 0.096 -0.516 2.456 sum -6.124 -0.423 2.959 6.815 Atomic orbital electron populations 1.23272 0.76963 1.05288 1.01924 1.86005 1.22823 1.26885 1.88746 1.19103 0.92321 0.84678 0.97268 1.19228 0.90232 0.95979 1.06232 1.21342 0.93727 0.95405 0.97224 0.88475 1.23584 0.95215 1.01651 0.97485 1.21920 1.00540 0.78811 0.97509 0.88410 1.45455 1.12214 1.07995 1.69005 1.17255 0.83863 0.84764 0.76425 1.90855 1.30745 1.69743 1.52080 1.19961 0.88397 0.90605 1.11053 1.21103 0.99348 0.90883 1.02842 1.18437 0.93666 0.94323 1.07532 1.20609 1.00832 0.89628 0.96543 1.20683 0.93665 0.99012 1.03503 1.19209 0.93721 0.93608 0.98797 1.24989 0.96119 1.03284 0.94818 1.86555 1.47379 1.45556 1.57341 0.93998 0.81935 0.72831 0.84138 1.20005 0.99836 0.88727 1.04511 1.18432 0.94897 0.85133 1.01861 1.41779 1.11360 1.04481 1.59433 1.23391 0.94011 1.02659 0.95994 1.21116 1.00932 0.90825 0.97467 1.21367 0.94117 0.99289 1.03285 1.21263 0.95231 0.97559 0.97068 1.21491 1.00884 0.92486 1.08772 0.86647 0.91979 0.92221 0.87756 0.91809 0.75397 0.82462 0.83292 0.83977 0.88311 0.75454 1.21433 1.22706 0.84525 0.72897 0.89890 0.87475 0.83736 0.84239 0.84243 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.80 9.43 -92.41 -0.87 -1.67 16 3 C 0.11 0.38 6.66 22.51 0.15 0.53 16 4 C -0.12 -0.22 5.30 -19.77 -0.10 -0.32 16 5 C -0.06 0.06 3.74 -11.01 -0.04 0.01 16 6 H 0.10 -0.03 7.32 -2.39 -0.02 -0.05 16 7 C -0.14 0.07 7.26 31.12 0.23 0.30 16 8 C 0.12 -0.04 4.32 45.52 0.20 0.16 16 9 H 0.10 0.26 7.46 -2.39 -0.02 0.25 16 10 N -0.70 0.29 5.26 -443.65 -2.33 -2.05 16 11 C 0.59 3.56 7.80 86.56 0.68 4.23 16 12 O -0.56 -7.63 16.44 -4.19 -0.07 -7.70 16 13 C 0.01 0.04 6.97 39.91 0.28 0.32 16 14 C -0.11 -0.73 10.53 22.55 0.24 -0.49 16 15 C -0.14 -0.75 6.16 -21.36 -0.13 -0.88 16 16 C -0.06 -0.16 10.06 22.30 0.22 0.07 16 17 C -0.15 -0.26 8.59 22.02 0.19 -0.07 16 18 C -0.05 -0.12 5.39 -19.83 -0.11 -0.22 16 19 C -0.08 0.11 2.78 71.23 0.20 0.31 16 20 O -0.56 -0.79 12.80 -148.98 -1.91 -2.70 16 21 Si 0.77 -1.77 29.81 68.60 2.05 0.27 16 22 C -0.11 -0.27 9.68 22.37 0.22 -0.05 16 23 C 0.11 0.41 7.25 39.13 0.28 0.69 16 24 N -0.56 -0.14 6.07 -177.18 -1.08 -1.21 16 25 C -0.12 0.39 7.29 31.12 0.23 0.62 16 26 C -0.09 -0.01 8.60 22.25 0.19 0.18 16 27 C -0.16 -0.01 10.04 22.28 0.22 0.21 16 28 C -0.09 -0.05 10.04 22.25 0.22 0.18 16 29 C -0.22 -0.36 9.04 22.37 0.20 -0.16 16 30 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.06 -0.32 7.66 -2.38 -0.02 -0.34 16 32 H 0.06 -0.28 7.66 -2.38 -0.02 -0.30 16 33 H 0.10 -0.21 6.34 -2.38 -0.02 -0.22 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.41 -2.33 7.76 -92.71 -0.72 -3.05 16 36 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 37 H 0.15 -0.25 8.06 -2.91 -0.02 -0.28 16 38 H 0.14 -0.27 4.81 -2.91 -0.01 -0.28 16 39 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 40 H 0.39 -2.61 8.74 -74.06 -0.65 -3.26 16 41 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 42 H -0.30 -1.55 7.04 99.48 0.70 -0.85 16 43 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 44 H 0.43 -2.70 8.12 -92.71 -0.75 -3.46 16 45 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 46 H 0.11 -0.45 7.71 -2.39 -0.02 -0.47 16 47 H 0.15 -0.54 6.68 -2.91 -0.02 -0.56 16 48 H 0.14 -0.51 8.06 -2.92 -0.02 -0.53 16 49 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 50 H 0.14 -0.25 6.30 -2.91 -0.02 -0.27 16 Total: 0.00 -22.72 410.53 -0.60 -23.32 By element: Atomic # 1 Polarization: -13.85 SS G_CDS: -1.06 Total: -14.91 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.67 Total: 6.65 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -3.41 Total: -3.26 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -2.85 Total: -12.07 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: 2.05 Total: 0.27 kcal Total: -22.72 -0.60 -23.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13158378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.063 kcal (2) G-P(sol) polarization free energy of solvation -22.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds