Wall clock time and date at job start Sun Mar 7 2021 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 117.00376 * 2 1 4 4 C 1.38699 * 120.05680 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.03177 * 359.95583 * 4 3 2 6 6 H 1.09002 * 112.84673 * 348.79780 * 5 4 3 7 7 C 1.53778 * 113.61648 * 119.99936 * 5 4 3 8 8 C 1.53791 * 87.08143 * 140.06443 * 7 5 4 9 9 H 1.08998 * 113.61378 * 219.93269 * 8 7 5 10 10 N 1.46507 * 113.60995 * 89.11412 * 8 7 5 11 11 C 1.34780 * 119.99327 * 155.00370 * 10 8 7 12 12 O 1.21576 * 119.99965 * 359.97438 * 11 10 8 13 13 C 1.47652 * 119.99455 * 180.02562 * 11 10 8 14 14 C 1.40169 * 119.97568 * 0.02562 * 13 11 10 15 15 C 1.36352 * 120.66956 * 179.97438 * 14 13 11 16 16 C 1.39332 * 120.23764 * 359.96135 * 15 14 13 17 17 N 1.37405 * 133.25613 * 180.02562 * 16 15 14 18 18 C 1.36866 * 109.98235 * 179.77411 * 17 16 15 19 19 C 1.34190 * 109.96358 * 0.38389 * 18 17 16 20 20 C 1.50701 * 126.53741 * 179.88991 * 19 18 17 21 21 O 1.42896 * 109.47417 * 254.69100 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.69116 * 20 19 18 23 23 C 1.40902 * 119.63849 * 0.03992 * 16 15 14 24 24 C 1.39187 * 119.97326 * 179.97438 * 13 11 10 25 25 C 1.53781 * 87.08084 * 334.56765 * 8 7 5 26 26 C 1.38178 * 119.94159 * 180.22949 * 4 3 2 27 27 C 1.38235 * 120.05145 * 359.51491 * 26 4 3 28 28 C 1.38282 * 120.11823 * 0.46279 * 27 26 4 29 29 C 1.38127 * 120.05263 * 359.78934 * 28 27 26 30 30 H 1.08997 * 109.47133 * 59.99832 * 1 2 3 31 31 H 1.08996 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47046 * 300.00517 * 1 2 3 33 33 H 1.08997 * 113.61859 * 25.52066 * 7 5 4 34 34 H 1.09004 * 113.68897 * 254.61921 * 7 5 4 35 35 H 0.96995 * 120.00430 * 335.00403 * 10 8 7 36 36 H 1.08000 * 119.66637 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.88558 * 179.97438 * 15 14 13 38 38 H 0.97004 * 125.00685 * 359.97438 * 17 16 15 39 39 H 1.07999 * 125.01325 * 180.24272 * 18 17 16 40 40 H 1.09002 * 109.47060 * 134.69127 * 20 19 18 41 41 H 0.96708 * 114.00101 * 59.99427 * 21 20 19 42 42 H 1.48494 * 109.99914 * 58.67711 * 22 20 19 43 43 H 1.48493 * 110.00101 * 179.97438 * 22 20 19 44 44 H 1.08003 * 120.30342 * 0.02562 * 24 13 11 45 45 H 1.08995 * 113.61614 * 139.97843 * 25 8 7 46 46 H 1.08995 * 113.61533 * 270.88564 * 25 8 7 47 47 H 1.07998 * 119.96535 * 179.74649 * 26 4 3 48 48 H 1.08006 * 119.94239 * 180.25086 * 27 26 4 49 49 H 1.07995 * 119.97483 * 179.76755 * 28 27 26 50 50 H 1.08001 * 120.02785 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2848 -0.0005 5 6 4.2537 0.0221 -0.0001 6 1 3.6592 -0.8703 0.1958 7 6 5.1798 -0.1102 -1.2206 8 6 6.2398 -0.6697 -0.2570 9 1 7.2493 -0.3154 -0.4649 10 7 6.1704 -2.1234 -0.0883 11 6 7.2683 -2.8118 0.2821 12 8 8.3162 -2.2266 0.4757 13 6 7.1986 -4.2769 0.4516 14 6 5.9905 -4.9512 0.2266 15 6 5.9103 -6.3039 0.3785 16 6 7.0334 -7.0350 0.7600 17 7 7.2541 -8.3721 0.9866 18 6 8.5596 -8.5769 1.3428 19 6 9.2165 -7.4070 1.3681 20 6 10.6686 -7.2007 1.7142 21 8 10.7708 -6.6332 3.0217 22 14 11.5546 -8.8391 1.6775 23 6 8.2536 -6.3688 0.9891 24 6 8.3328 -4.9875 0.8336 25 6 5.5270 0.1144 0.8574 26 6 4.0560 2.5171 0.0043 27 6 3.3019 3.6757 -0.0005 28 6 1.9209 3.6048 -0.0005 29 6 1.2914 2.3753 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 5.4555 0.8460 -1.6653 34 1 4.8330 -0.8353 -1.9569 35 1 5.3345 -2.5903 -0.2431 36 1 5.1144 -4.3938 -0.0700 37 1 4.9729 -6.8105 0.2023 38 1 6.5841 -9.0687 0.9034 39 1 8.9960 -9.5378 1.5720 40 1 11.1227 -6.5257 0.9887 41 1 10.3861 -7.1813 3.7195 42 1 11.4287 -9.4545 0.3319 43 1 12.9878 -8.6493 2.0165 44 1 9.2658 -4.4721 1.0076 45 1 5.4593 -0.4296 1.7995 46 1 5.8974 1.1321 0.9808 47 1 5.1344 2.5751 0.0080 48 1 3.7922 4.6381 -0.0009 49 1 1.3341 4.5114 -0.0004 50 1 0.2128 2.3204 0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13287722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:23 Heat of formation + Delta-G solvation = 14.775910 kcal Electronic energy + Delta-G solvation = -33256.588187 eV Core-core repulsion = 28796.033923 eV Total energy + Delta-G solvation = -4460.554264 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.46701 -41.75407 -40.87857 -39.48025 -38.09932 -37.88979 -37.39588 -34.69735 -33.26442 -32.01901 -31.05029 -30.77828 -30.35676 -28.14734 -26.70395 -26.48604 -26.36931 -24.77126 -23.48023 -23.10945 -22.58119 -21.73311 -20.78363 -20.13905 -19.36047 -19.07031 -18.45220 -17.54632 -17.42603 -17.22439 -16.94354 -16.66895 -16.63533 -16.23915 -16.03451 -15.83775 -15.55389 -15.36160 -15.20331 -15.09034 -14.93394 -14.80308 -14.74228 -14.32480 -14.08080 -14.02519 -13.76564 -13.61260 -13.49093 -13.17898 -12.98761 -12.75320 -12.61994 -12.36404 -12.29476 -12.19209 -12.01573 -11.92912 -11.76887 -11.65200 -11.16717 -11.12055 -10.80815 -10.32549 -10.17707 -9.76341 -9.33486 -9.07223 -8.80826 -5.00843 -0.17416 0.19428 0.34505 0.48966 1.35758 1.53004 1.71079 1.80770 2.02220 2.04808 2.13296 2.38663 2.76038 2.86430 3.46109 3.60203 3.63176 3.66329 3.68298 3.75255 3.85942 3.91796 3.92586 3.99616 4.09685 4.14322 4.19274 4.32811 4.36461 4.37656 4.44625 4.45782 4.48793 4.53629 4.58932 4.64491 4.70369 4.73814 4.77081 4.78117 4.84649 4.94344 4.99300 5.00080 5.10084 5.16607 5.25875 5.33092 5.40774 5.44768 5.50436 5.57546 5.59459 5.66313 5.85722 5.97971 6.44688 6.46895 6.60862 6.87988 7.14693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.055 4.055 6 H 0.101 0.899 7 C -0.123 4.123 8 C 0.115 3.885 9 H 0.086 0.914 10 N -0.694 5.694 11 C 0.562 3.438 12 O -0.587 6.587 13 C -0.179 4.179 14 C -0.069 4.069 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.571 5.571 18 C 0.088 3.912 19 C -0.227 4.227 20 C -0.054 4.054 21 O -0.565 6.565 22 Si 0.813 3.187 23 C -0.129 4.129 24 C -0.024 4.024 25 C -0.142 4.142 26 C -0.087 4.087 27 C -0.163 4.163 28 C -0.093 4.093 29 C -0.217 4.217 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.440 0.560 39 H 0.222 0.778 40 H 0.083 0.917 41 H 0.393 0.607 42 H -0.279 1.279 43 H -0.308 1.308 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -7.024 -0.005 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.073 4.073 6 H 0.119 0.881 7 C -0.160 4.160 8 C 0.009 3.991 9 H 0.105 0.895 10 N -0.346 5.346 11 C 0.352 3.648 12 O -0.469 6.469 13 C -0.183 4.183 14 C -0.089 4.089 15 C -0.144 4.144 16 C 0.001 3.999 17 N -0.174 5.174 18 C -0.039 4.039 19 C -0.234 4.234 20 C -0.163 4.163 21 O -0.373 6.373 22 Si 0.717 3.283 23 C -0.134 4.134 24 C -0.044 4.044 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.181 4.181 28 C -0.111 4.111 29 C -0.235 4.235 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.252 0.748 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.281 0.719 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.243 0.757 42 H -0.206 1.206 43 H -0.236 1.236 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.118 0.882 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.445 -6.921 -0.572 10.181 hybrid contribution -0.722 0.871 -0.346 1.183 sum -8.167 -6.051 -0.918 10.206 Atomic orbital electron populations 1.23283 0.76903 1.05381 1.01906 1.86015 1.22877 1.26764 1.88696 1.19073 0.92197 0.84752 0.97131 1.19224 0.90349 0.95884 1.06194 1.21311 0.93554 0.95535 0.96900 0.88089 1.23375 0.94100 1.02473 0.96096 1.21865 0.99941 0.79680 0.97576 0.89547 1.45437 1.12650 1.07372 1.69121 1.18507 0.83229 0.87544 0.75501 1.90757 1.31468 1.71700 1.52948 1.19552 0.96007 0.91924 1.10802 1.20860 0.96154 0.94225 0.97630 1.20057 0.97308 0.93290 1.03746 1.18611 0.95355 0.84933 1.00981 1.41780 1.11116 1.06119 1.58430 1.22247 0.83089 0.99626 0.98977 1.20858 0.96500 0.92429 1.13631 1.24773 0.95136 1.10172 0.86201 1.86489 1.83044 1.51582 1.16186 0.94046 0.76831 0.75385 0.82017 1.19222 0.94764 0.92808 1.06567 1.20591 0.97430 0.92492 0.93840 1.23572 0.95471 1.01382 0.97584 1.21100 1.00810 0.90980 0.97611 1.21350 0.94201 0.99169 1.03420 1.21258 0.95116 0.97630 0.97070 1.21496 1.00922 0.92404 1.08712 0.92018 0.86493 0.92197 0.87842 0.89753 0.74784 0.82536 0.82002 0.71877 0.76226 0.89962 0.75685 1.20562 1.23616 0.87691 0.91831 0.88154 0.84098 0.84352 0.84171 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.96 9.43 -92.49 -0.87 -1.83 16 3 C 0.11 0.48 6.66 22.50 0.15 0.63 16 4 C -0.12 -0.39 5.30 -19.77 -0.10 -0.50 16 5 C -0.05 -0.06 3.74 -11.01 -0.04 -0.10 16 6 H 0.10 0.13 7.33 -2.39 -0.02 0.11 16 7 C -0.12 0.04 7.29 31.12 0.23 0.27 16 8 C 0.11 0.42 4.33 45.52 0.20 0.61 16 9 H 0.09 0.68 7.46 -2.39 -0.02 0.67 16 10 N -0.69 -2.55 5.21 -443.06 -2.31 -4.86 16 11 C 0.56 6.33 7.76 86.73 0.67 7.01 16 12 O -0.59 -12.02 15.93 -3.95 -0.06 -12.08 16 13 C -0.18 -1.46 5.87 -20.09 -0.12 -1.58 16 14 C -0.07 -0.01 9.46 22.30 0.21 0.20 16 15 C -0.12 0.26 10.00 22.09 0.22 0.48 16 16 C 0.11 0.09 7.27 39.19 0.28 0.38 16 17 N -0.57 3.47 6.05 -187.48 -1.13 2.34 16 18 C 0.09 -0.50 10.43 82.98 0.87 0.36 16 19 C -0.23 -0.52 5.58 -18.61 -0.10 -0.63 16 20 C -0.05 -0.18 3.06 71.24 0.22 0.04 16 21 O -0.57 -2.93 12.88 -148.98 -1.92 -4.85 16 22 Si 0.81 -2.32 30.75 68.60 2.11 -0.21 16 23 C -0.13 -0.92 6.34 -20.21 -0.13 -1.05 16 24 C -0.02 -0.28 9.64 22.74 0.22 -0.06 16 25 C -0.14 -0.36 7.26 31.12 0.23 -0.14 16 26 C -0.09 -0.17 8.63 22.25 0.19 0.03 16 27 C -0.16 -0.22 10.04 22.28 0.22 0.00 16 28 C -0.09 -0.12 10.04 22.25 0.22 0.10 16 29 C -0.22 -0.48 9.04 22.37 0.20 -0.28 16 30 H 0.06 -0.31 7.66 -2.39 -0.02 -0.33 16 31 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.06 -0.28 7.66 -2.38 -0.02 -0.30 16 33 H 0.10 -0.13 7.73 -2.39 -0.02 -0.15 16 34 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.41 -1.02 6.70 -92.71 -0.62 -1.65 16 36 H 0.16 -1.04 6.36 -2.91 -0.02 -1.06 16 37 H 0.16 -1.48 8.06 -2.91 -0.02 -1.50 16 38 H 0.44 -5.90 8.96 -92.71 -0.83 -6.73 16 39 H 0.22 -3.31 6.34 -2.91 -0.02 -3.33 16 40 H 0.08 0.65 7.96 -2.39 -0.02 0.64 16 41 H 0.39 -1.77 8.70 -74.05 -0.64 -2.42 16 42 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 43 H -0.31 -1.85 7.11 99.48 0.71 -1.14 16 44 H 0.10 1.77 7.64 -2.91 -0.02 1.75 16 45 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.10 0.12 6.31 -2.39 -0.02 0.11 16 47 H 0.14 -0.18 6.65 -2.91 -0.02 -0.20 16 48 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 49 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 50 H 0.14 -0.22 6.30 -2.91 -0.02 -0.24 16 Total: 0.00 -31.26 410.40 -0.27 -31.53 By element: Atomic # 1 Polarization: -15.81 SS G_CDS: -1.03 Total: -16.84 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.95 Total: 6.81 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -3.44 Total: -2.52 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -2.85 Total: -18.77 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.11 Total: -0.21 kcal Total: -31.26 -0.27 -31.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.303 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds