Wall clock time and date at job start Sun Mar 7 2021 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99859 * 2 1 4 4 C 1.38706 * 120.05554 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.02949 * 0.02562 * 4 3 2 6 6 H 1.09005 * 112.84890 * 11.19497 * 5 4 3 7 7 C 1.53780 * 113.61672 * 142.50368 * 5 4 3 8 8 C 1.53778 * 87.08593 * 139.98088 * 7 5 4 9 9 H 1.08997 * 113.69659 * 220.00903 * 8 7 5 10 10 N 1.46501 * 113.61331 * 89.11334 * 8 7 5 11 11 C 1.34771 * 119.99960 * 107.50786 * 10 8 7 12 12 O 1.21513 * 120.00334 * 0.02562 * 11 10 8 13 13 C 1.48172 * 120.00223 * 179.97438 * 11 10 8 14 14 N 1.32712 * 119.72209 * 0.02562 * 13 11 10 15 15 C 1.31524 * 121.64652 * 180.02562 * 14 13 11 16 16 C 1.38560 * 120.89865 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.32502 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47263 * 245.00126 * 17 16 15 19 19 Si 1.86302 * 109.46716 * 4.99551 * 17 16 15 20 20 C 1.38628 * 119.35492 * 359.97438 * 16 15 14 21 21 C 1.38587 * 118.48695 * 359.97438 * 20 16 15 22 22 C 1.53778 * 87.07923 * 334.56943 * 8 7 5 23 23 C 1.38163 * 119.94214 * 180.27501 * 4 3 2 24 24 C 1.38245 * 120.05925 * 359.49751 * 23 4 3 25 25 C 1.38287 * 120.10623 * 0.50327 * 24 23 4 26 26 C 1.38118 * 120.06025 * 359.74909 * 25 24 23 27 27 H 1.09004 * 109.46967 * 299.99872 * 1 2 3 28 28 H 1.08999 * 109.47387 * 59.99937 * 1 2 3 29 29 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.61284 * 25.43159 * 7 5 4 31 31 H 1.09005 * 113.61590 * 254.53184 * 7 5 4 32 32 H 0.97002 * 119.99945 * 287.50176 * 10 8 7 33 33 H 1.07995 * 119.55324 * 179.71437 * 15 14 13 34 34 H 1.08994 * 109.47265 * 124.99616 * 17 16 15 35 35 H 0.96699 * 114.00173 * 179.97438 * 18 17 16 36 36 H 1.48508 * 109.99852 * 178.68073 * 19 17 16 37 37 H 1.48497 * 110.00265 * 299.99786 * 19 17 16 38 38 H 1.07998 * 120.75303 * 180.02562 * 20 16 15 39 39 H 1.08003 * 120.47095 * 179.97438 * 21 20 16 40 40 H 1.09000 * 113.62103 * 139.97892 * 22 8 7 41 41 H 1.09001 * 113.61712 * 270.79667 * 22 8 7 42 42 H 1.08009 * 119.97052 * 179.74353 * 23 4 3 43 43 H 1.08000 * 119.94845 * 180.25743 * 24 23 4 44 44 H 1.08000 * 119.96986 * 179.77215 * 25 24 23 45 45 H 1.08002 * 120.03549 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2849 -0.0005 5 6 4.2537 0.0223 -0.0017 6 1 3.6591 -0.8701 -0.1971 7 6 5.5263 0.1170 -0.8599 8 6 6.2408 -0.6674 0.2533 9 1 7.2501 -0.3121 0.4609 10 7 6.1731 -2.1209 0.0833 11 6 7.2715 -2.8077 -0.2884 12 8 8.3181 -2.2215 -0.4820 13 6 7.2032 -4.2779 -0.4598 14 7 6.0575 -4.9128 -0.2464 15 6 5.9544 -6.2164 -0.3870 16 6 7.0469 -6.9799 -0.7653 17 6 6.9143 -8.4729 -0.9219 18 8 7.7234 -9.1283 0.0567 19 14 5.1333 -8.9662 -0.6863 20 6 8.2633 -6.3571 -0.9984 21 6 8.3423 -4.9822 -0.8436 22 6 5.1808 -0.1101 1.2180 23 6 4.0558 2.5172 0.0052 24 6 3.3018 3.6759 0.0010 25 6 1.9208 3.6048 0.0015 26 6 1.2913 2.3754 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 5.8954 1.1352 -0.9825 31 1 5.4587 -0.4263 -1.8025 32 1 5.3377 -2.5890 0.2383 33 1 5.0064 -6.6989 -0.2001 34 1 7.2431 -8.7643 -1.9194 35 1 7.6865 -10.0937 0.0151 36 1 4.9838 -10.4323 -0.8697 37 1 4.6729 -8.5745 0.6701 38 1 9.1294 -6.9303 -1.2946 39 1 9.2741 -4.4642 -1.0166 40 1 4.8343 -0.8365 1.9531 41 1 5.4561 0.8454 1.6647 42 1 5.1343 2.5753 0.0090 43 1 3.7921 4.6382 0.0013 44 1 1.3339 4.5114 0.0020 45 1 0.2127 2.3203 0.0019 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:29 Heat of formation + Delta-G solvation = -4.415662 kcal Electronic energy + Delta-G solvation = -28406.318824 eV Core-core repulsion = 24356.922251 eV Total energy + Delta-G solvation = -4049.396573 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92296 -41.46322 -40.44639 -39.17043 -38.07619 -37.93345 -34.71275 -33.70162 -32.96579 -31.73935 -31.02579 -28.29663 -27.93005 -26.65330 -26.04615 -24.97929 -23.92060 -23.04846 -22.52345 -21.82658 -20.06006 -19.32248 -18.91972 -18.74406 -18.09605 -17.34316 -16.91852 -16.83926 -16.66227 -16.57751 -16.16149 -16.08328 -15.57014 -15.37909 -15.32695 -15.11625 -14.87443 -14.55927 -14.33041 -14.16337 -14.05274 -14.01705 -13.90406 -13.44305 -13.09689 -13.01886 -12.77381 -12.57609 -12.28160 -12.12354 -12.04242 -11.69830 -11.61559 -11.27104 -11.09658 -11.03357 -10.76603 -10.54436 -10.25907 -9.95898 -9.71104 -9.01711 -5.11286 -0.51305 0.12118 0.39323 0.54673 1.07895 1.45060 1.68077 1.81297 2.04730 2.35972 2.69707 2.81154 2.97492 3.17642 3.52750 3.55911 3.67538 3.71940 3.75988 3.79750 3.91044 3.92339 4.02923 4.10538 4.19082 4.21565 4.22979 4.24204 4.25185 4.46247 4.49086 4.58086 4.58197 4.69240 4.73399 4.78719 4.84182 4.94869 4.99824 5.01326 5.07743 5.12265 5.23814 5.40282 5.44647 5.53431 5.63349 5.71826 5.86860 6.24507 6.40585 6.46982 6.70184 7.21609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.130 3.870 4 C -0.102 4.102 5 C -0.064 4.064 6 H 0.104 0.896 7 C -0.144 4.144 8 C 0.117 3.883 9 H 0.107 0.893 10 N -0.692 5.692 11 C 0.576 3.424 12 O -0.528 6.528 13 C 0.081 3.919 14 N -0.452 5.452 15 C 0.105 3.895 16 C -0.103 4.103 17 C -0.076 4.076 18 O -0.534 6.534 19 Si 0.683 3.317 20 C -0.053 4.053 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.080 4.080 24 C -0.154 4.154 25 C -0.084 4.084 26 C -0.207 4.207 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.413 0.587 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.384 0.616 36 H -0.256 1.256 37 H -0.249 1.249 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -1.808 -2.014 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.085 3.915 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.122 0.878 7 C -0.182 4.182 8 C 0.012 3.988 9 H 0.125 0.875 10 N -0.343 5.343 11 C 0.361 3.639 12 O -0.403 6.403 13 C -0.058 4.058 14 N -0.163 5.163 15 C -0.054 4.054 16 C -0.105 4.105 17 C -0.186 4.186 18 O -0.342 6.342 19 Si 0.583 3.417 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.173 4.173 23 C -0.098 4.098 24 C -0.173 4.173 25 C -0.102 4.102 26 C -0.226 4.226 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.181 0.819 34 H 0.102 0.898 35 H 0.233 0.767 36 H -0.180 1.180 37 H -0.174 1.174 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.425 -0.904 -1.262 4.689 hybrid contribution 0.721 -1.432 0.163 1.612 sum -3.703 -2.337 -1.099 4.515 Atomic orbital electron populations 1.23078 0.78259 1.04134 1.01369 1.86059 1.21373 1.26742 1.88586 1.18869 0.91822 0.84281 0.96540 1.19043 0.90133 0.95361 1.05757 1.21414 0.94015 0.95921 0.96830 0.87806 1.23581 0.95203 1.01254 0.98164 1.21911 1.00561 0.79524 0.96817 0.87518 1.45498 1.13229 1.07277 1.68313 1.17828 0.83821 0.85331 0.76926 1.90811 1.29622 1.69402 1.50503 1.21150 0.90343 0.94324 0.99944 1.67539 1.25681 1.10474 1.12582 1.22596 0.98224 0.89141 0.95437 1.20522 0.95215 0.95068 0.99699 1.24728 1.07860 0.91256 0.94725 1.86583 1.67411 1.24012 1.56221 0.95047 0.77063 0.82937 0.86634 1.21530 0.97517 0.93831 0.94970 1.22205 0.99840 0.94293 0.96497 1.23432 0.95254 1.02180 0.96476 1.20883 1.00055 0.91009 0.97864 1.21077 0.93932 0.98498 1.03756 1.20969 0.94787 0.97026 0.97429 1.21261 1.00099 0.92430 1.08806 0.92635 0.92628 0.88073 0.88628 0.90682 0.75030 0.81897 0.89836 0.76737 1.18025 1.17390 0.83602 0.82915 0.90458 0.88358 0.85214 0.85788 0.85809 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.31 -0.55 9.43 -19.43 -0.18 -0.74 16 3 C 0.13 0.28 6.66 -39.22 -0.26 0.02 16 4 C -0.10 -0.16 5.30 -104.48 -0.55 -0.71 16 5 C -0.06 -0.03 3.75 -90.96 -0.34 -0.37 16 6 H 0.10 0.11 7.33 -51.93 -0.38 -0.27 16 7 C -0.14 -0.05 7.25 -25.92 -0.19 -0.24 16 8 C 0.12 0.10 4.33 -67.12 -0.29 -0.19 16 9 H 0.11 0.20 7.46 -51.93 -0.39 -0.19 16 10 N -0.69 -1.07 5.25 -53.86 -0.28 -1.36 16 11 C 0.58 2.12 7.81 -12.18 -0.10 2.03 16 12 O -0.53 -3.37 15.92 5.35 0.09 -3.28 16 13 C 0.08 0.22 6.75 -83.01 -0.56 -0.34 16 14 N -0.45 -0.89 9.54 -9.80 -0.09 -0.99 16 15 C 0.11 0.06 9.84 -17.56 -0.17 -0.12 16 16 C -0.10 -0.02 5.40 -104.36 -0.56 -0.59 16 17 C -0.08 0.12 2.81 36.01 0.10 0.22 16 18 O -0.53 0.13 12.82 -35.23 -0.45 -0.32 16 19 Si 0.68 -1.61 29.88 -169.99 -5.08 -6.69 16 20 C -0.05 -0.02 9.83 -39.31 -0.39 -0.41 16 21 C -0.11 -0.18 9.63 -39.05 -0.38 -0.56 16 22 C -0.14 0.03 7.29 -25.92 -0.19 -0.16 16 23 C -0.08 -0.06 8.60 -39.61 -0.34 -0.40 16 24 C -0.15 -0.10 10.04 -39.56 -0.40 -0.50 16 25 C -0.08 -0.07 10.04 -39.61 -0.40 -0.46 16 26 C -0.21 -0.25 9.04 -39.43 -0.36 -0.61 16 27 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 29 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.10 -0.04 6.32 -51.93 -0.33 -0.37 16 31 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.41 0.20 8.03 -40.82 -0.33 -0.13 16 33 H 0.16 -0.28 4.88 -52.49 -0.26 -0.53 16 34 H 0.08 -0.29 7.96 -51.93 -0.41 -0.71 16 35 H 0.38 -1.61 8.74 45.56 0.40 -1.21 16 36 H -0.26 0.08 7.11 56.52 0.40 0.48 16 37 H -0.25 -0.16 7.05 56.52 0.40 0.24 16 38 H 0.15 -0.19 8.06 -52.49 -0.42 -0.62 16 39 H 0.15 0.17 7.64 -52.48 -0.40 -0.23 16 40 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 -0.08 7.72 -51.93 -0.40 -0.48 16 42 H 0.13 -0.14 6.67 -52.48 -0.35 -0.49 16 43 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 44 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 45 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 LS Contribution 374.16 15.07 5.64 5.64 Total: 0.00 -8.23 374.16 -10.45 -18.68 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -5.71 Total: -8.51 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.38 Total: -2.44 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -0.38 Total: -2.34 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.55 Total: -4.34 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.08 Total: -6.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -8.23 -10.45 -18.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.266 kcal (2) G-P(sol) polarization free energy of solvation -8.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds