Wall clock time and date at job start Sun Mar 7 2021 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99859 * 2 1 4 4 C 1.38706 * 120.05554 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.02949 * 0.02562 * 4 3 2 6 6 H 1.09005 * 112.84890 * 11.19497 * 5 4 3 7 7 C 1.53780 * 113.61672 * 142.50368 * 5 4 3 8 8 C 1.53778 * 87.08593 * 139.98088 * 7 5 4 9 9 H 1.08997 * 113.69659 * 220.00903 * 8 7 5 10 10 N 1.46501 * 113.61331 * 89.11334 * 8 7 5 11 11 C 1.34771 * 119.99960 * 107.50786 * 10 8 7 12 12 O 1.21513 * 120.00334 * 0.02562 * 11 10 8 13 13 C 1.48172 * 120.00223 * 179.97438 * 11 10 8 14 14 N 1.32712 * 119.72209 * 0.02562 * 13 11 10 15 15 C 1.31524 * 121.64652 * 180.02562 * 14 13 11 16 16 C 1.38560 * 120.89865 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.32502 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47263 * 245.00126 * 17 16 15 19 19 Si 1.86302 * 109.46716 * 4.99551 * 17 16 15 20 20 C 1.38628 * 119.35492 * 359.97438 * 16 15 14 21 21 C 1.38587 * 118.48695 * 359.97438 * 20 16 15 22 22 C 1.53778 * 87.07923 * 334.56943 * 8 7 5 23 23 C 1.38163 * 119.94214 * 180.27501 * 4 3 2 24 24 C 1.38245 * 120.05925 * 359.49751 * 23 4 3 25 25 C 1.38287 * 120.10623 * 0.50327 * 24 23 4 26 26 C 1.38118 * 120.06025 * 359.74909 * 25 24 23 27 27 H 1.09004 * 109.46967 * 299.99872 * 1 2 3 28 28 H 1.08999 * 109.47387 * 59.99937 * 1 2 3 29 29 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.61284 * 25.43159 * 7 5 4 31 31 H 1.09005 * 113.61590 * 254.53184 * 7 5 4 32 32 H 0.97002 * 119.99945 * 287.50176 * 10 8 7 33 33 H 1.07995 * 119.55324 * 179.71437 * 15 14 13 34 34 H 1.08994 * 109.47265 * 124.99616 * 17 16 15 35 35 H 0.96699 * 114.00173 * 179.97438 * 18 17 16 36 36 H 1.48508 * 109.99852 * 178.68073 * 19 17 16 37 37 H 1.48497 * 110.00265 * 299.99786 * 19 17 16 38 38 H 1.07998 * 120.75303 * 180.02562 * 20 16 15 39 39 H 1.08003 * 120.47095 * 179.97438 * 21 20 16 40 40 H 1.09000 * 113.62103 * 139.97892 * 22 8 7 41 41 H 1.09001 * 113.61712 * 270.79667 * 22 8 7 42 42 H 1.08009 * 119.97052 * 179.74353 * 23 4 3 43 43 H 1.08000 * 119.94845 * 180.25743 * 24 23 4 44 44 H 1.08000 * 119.96986 * 179.77215 * 25 24 23 45 45 H 1.08002 * 120.03549 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2849 -0.0005 5 6 4.2537 0.0223 -0.0017 6 1 3.6591 -0.8701 -0.1971 7 6 5.5263 0.1170 -0.8599 8 6 6.2408 -0.6674 0.2533 9 1 7.2501 -0.3121 0.4609 10 7 6.1731 -2.1209 0.0833 11 6 7.2715 -2.8077 -0.2884 12 8 8.3181 -2.2215 -0.4820 13 6 7.2032 -4.2779 -0.4598 14 7 6.0575 -4.9128 -0.2464 15 6 5.9544 -6.2164 -0.3870 16 6 7.0469 -6.9799 -0.7653 17 6 6.9143 -8.4729 -0.9219 18 8 7.7234 -9.1283 0.0567 19 14 5.1333 -8.9662 -0.6863 20 6 8.2633 -6.3571 -0.9984 21 6 8.3423 -4.9822 -0.8436 22 6 5.1808 -0.1101 1.2180 23 6 4.0558 2.5172 0.0052 24 6 3.3018 3.6759 0.0010 25 6 1.9208 3.6048 0.0015 26 6 1.2913 2.3754 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 5.8954 1.1352 -0.9825 31 1 5.4587 -0.4263 -1.8025 32 1 5.3377 -2.5890 0.2383 33 1 5.0064 -6.6989 -0.2001 34 1 7.2431 -8.7643 -1.9194 35 1 7.6865 -10.0937 0.0151 36 1 4.9838 -10.4323 -0.8697 37 1 4.6729 -8.5745 0.6701 38 1 9.1294 -6.9303 -1.2946 39 1 9.2741 -4.4642 -1.0166 40 1 4.8343 -0.8365 1.9531 41 1 5.4561 0.8454 1.6647 42 1 5.1343 2.5753 0.0090 43 1 3.7921 4.6382 0.0013 44 1 1.3339 4.5114 0.0020 45 1 0.2127 2.3203 0.0019 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:27 Heat of formation + Delta-G solvation = -2.863692 kcal Electronic energy + Delta-G solvation = -28406.251525 eV Core-core repulsion = 24356.922251 eV Total energy + Delta-G solvation = -4049.329275 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.03341 -41.50039 -40.54490 -39.30482 -38.05539 -37.92480 -34.87305 -33.75505 -33.03519 -31.78269 -31.03321 -28.24827 -27.92651 -26.69651 -26.08932 -25.03003 -23.96058 -23.06068 -22.56724 -21.96531 -20.15846 -19.41458 -18.95583 -18.64760 -18.15319 -17.37584 -16.92245 -16.90848 -16.66524 -16.61836 -16.34896 -16.17940 -15.53041 -15.43445 -15.33756 -15.15124 -14.91303 -14.64094 -14.34569 -14.21659 -14.06690 -13.98212 -13.93672 -13.46699 -13.14946 -12.97813 -12.75187 -12.54598 -12.28103 -12.12101 -12.00766 -11.77738 -11.67026 -11.45746 -11.16437 -11.07741 -10.80910 -10.54059 -10.34275 -10.08854 -9.74615 -9.05836 -4.93217 -0.61217 0.07229 0.36082 0.50416 1.23354 1.50299 1.59533 1.90199 1.94340 2.40309 2.60965 2.77743 2.91017 3.26874 3.46644 3.60290 3.64905 3.67763 3.72551 3.79049 3.89144 3.93199 4.00328 4.11591 4.17392 4.20683 4.33253 4.37877 4.38163 4.47108 4.50291 4.57221 4.61481 4.71220 4.74269 4.78733 4.80148 4.89229 4.94517 4.98754 5.01147 5.11533 5.16856 5.36393 5.42435 5.45630 5.60058 5.66314 5.87645 6.25158 6.46252 6.54238 6.59655 7.01111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.095 0.905 7 C -0.138 4.138 8 C 0.113 3.887 9 H 0.097 0.903 10 N -0.683 5.683 11 C 0.573 3.427 12 O -0.563 6.563 13 C 0.062 3.938 14 N -0.461 5.461 15 C 0.098 3.902 16 C -0.103 4.103 17 C -0.081 4.081 18 O -0.556 6.556 19 Si 0.759 3.241 20 C -0.053 4.053 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.086 4.086 24 C -0.163 4.163 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.182 0.818 34 H 0.110 0.890 35 H 0.400 0.600 36 H -0.280 1.280 37 H -0.292 1.292 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -2.192 -2.312 5.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.113 0.887 7 C -0.176 4.176 8 C 0.008 3.992 9 H 0.115 0.885 10 N -0.334 5.334 11 C 0.358 3.642 12 O -0.442 6.442 13 C -0.076 4.076 14 N -0.172 5.172 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.191 4.191 18 O -0.367 6.367 19 Si 0.664 3.336 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.162 4.162 23 C -0.103 4.103 24 C -0.181 4.181 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.198 0.802 34 H 0.128 0.872 35 H 0.251 0.749 36 H -0.207 1.207 37 H -0.219 1.219 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.900 -1.290 -1.572 5.305 hybrid contribution 0.808 -1.375 0.284 1.620 sum -4.093 -2.665 -1.288 5.051 Atomic orbital electron populations 1.23276 0.76936 1.05311 1.01920 1.86032 1.22876 1.26880 1.88696 1.19120 0.92316 0.84733 0.97199 1.19233 0.90306 0.95923 1.06231 1.21309 0.93775 0.95421 0.97097 0.88658 1.23559 0.95069 1.01534 0.97432 1.21963 1.00374 0.79152 0.97706 0.88507 1.45496 1.12955 1.07637 1.67270 1.18056 0.83682 0.85922 0.76501 1.90779 1.30803 1.70182 1.52397 1.21085 0.91126 0.93910 1.01448 1.67507 1.25454 1.11267 1.12951 1.22962 0.99274 0.88788 0.95107 1.20788 0.94900 0.96239 0.98621 1.24904 1.08375 0.89916 0.95857 1.86535 1.67784 1.25641 1.56755 0.94166 0.75294 0.80444 0.83712 1.21768 0.98355 0.93314 0.94447 1.22298 0.99575 0.95028 0.96629 1.23388 0.94271 1.02497 0.96083 1.21107 1.00919 0.90793 0.97510 1.21363 0.94128 0.99223 1.03350 1.21262 0.95210 0.97547 0.97088 1.21488 1.00885 0.92415 1.08765 0.92041 0.92074 0.86658 0.87589 0.91701 0.74424 0.80163 0.87212 0.74861 1.20678 1.21948 0.81764 0.82981 0.90387 0.87384 0.83767 0.84194 0.84171 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.41 9.43 -92.46 -0.87 -2.28 16 3 C 0.11 0.55 6.66 22.51 0.15 0.70 16 4 C -0.12 -0.42 5.30 -19.77 -0.10 -0.53 16 5 C -0.06 -0.11 3.75 -11.02 -0.04 -0.15 16 6 H 0.10 0.33 7.33 -2.38 -0.02 0.32 16 7 C -0.14 -0.22 7.25 31.12 0.23 0.00 16 8 C 0.11 0.32 4.33 45.52 0.20 0.52 16 9 H 0.10 0.50 7.46 -2.39 -0.02 0.48 16 10 N -0.68 -3.13 5.25 -442.62 -2.32 -5.46 16 11 C 0.57 5.25 7.81 86.88 0.68 5.93 16 12 O -0.56 -8.39 15.92 -3.76 -0.06 -8.45 16 13 C 0.06 0.42 6.75 41.91 0.28 0.70 16 14 N -0.46 -2.19 9.54 -184.91 -1.76 -3.95 16 15 C 0.10 0.11 9.84 84.82 0.83 0.94 16 16 C -0.10 0.01 5.40 -19.69 -0.11 -0.10 16 17 C -0.08 0.37 2.81 71.24 0.20 0.57 16 18 O -0.56 0.86 12.82 -148.98 -1.91 -1.05 16 19 Si 0.76 -4.10 29.88 68.60 2.05 -2.05 16 20 C -0.05 -0.03 9.83 22.45 0.22 0.19 16 21 C -0.11 -0.50 9.63 22.61 0.22 -0.28 16 22 C -0.12 -0.01 7.29 31.12 0.23 0.22 16 23 C -0.09 -0.12 8.60 22.25 0.19 0.07 16 24 C -0.16 -0.15 10.04 22.28 0.22 0.08 16 25 C -0.09 -0.12 10.04 22.25 0.22 0.11 16 26 C -0.22 -0.56 9.04 22.37 0.20 -0.36 16 27 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 28 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.11 -0.06 6.32 -2.39 -0.02 -0.08 16 31 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.42 0.97 8.03 -92.71 -0.74 0.22 16 33 H 0.18 -0.65 4.88 -2.91 -0.01 -0.66 16 34 H 0.11 -1.03 7.96 -2.39 -0.02 -1.05 16 35 H 0.40 -3.80 8.74 -74.06 -0.65 -4.45 16 36 H -0.28 0.34 7.11 99.48 0.71 1.05 16 37 H -0.29 -0.50 7.05 99.48 0.70 0.20 16 38 H 0.16 -0.59 8.06 -2.91 -0.02 -0.62 16 39 H 0.15 0.58 7.64 -2.91 -0.02 0.55 16 40 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.11 -0.18 7.72 -2.39 -0.02 -0.20 16 42 H 0.14 -0.36 6.67 -2.91 -0.02 -0.38 16 43 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 45 H 0.14 -0.15 6.30 -2.91 -0.02 -0.17 16 Total: 0.00 -19.98 374.16 -0.26 -20.24 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: -0.31 Total: -6.65 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.93 Total: 9.66 kcal Atomic # 7 Polarization: -5.32 SS G_CDS: -4.09 Total: -9.41 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -2.84 Total: -11.79 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.05 Total: -2.05 kcal Total: -19.98 -0.26 -20.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.373 kcal (2) G-P(sol) polarization free energy of solvation -19.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds