Wall clock time and date at job start Sun Mar 7 2021 05:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99990 * 2 1 4 4 C 1.38714 * 120.05905 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.02422 * 359.95700 * 4 3 2 6 6 H 1.09004 * 112.85009 * 11.19707 * 5 4 3 7 7 C 1.53784 * 113.61579 * 142.50238 * 5 4 3 8 8 C 1.53779 * 87.08260 * 139.97937 * 7 5 4 9 9 H 1.08994 * 113.69008 * 220.00898 * 8 7 5 10 10 N 1.46502 * 113.61217 * 89.11925 * 8 7 5 11 11 C 1.34767 * 120.00152 * 107.50298 * 10 8 7 12 12 O 1.21637 * 119.99875 * 359.97438 * 11 10 8 13 13 C 1.47262 * 120.00286 * 179.97438 * 11 10 8 14 14 C 1.36770 * 126.93895 * 359.97262 * 13 11 10 15 15 N 1.34661 * 108.39624 * 180.02562 * 14 13 11 16 16 C 1.46501 * 124.85049 * 179.97438 * 15 14 13 17 17 C 1.36450 * 110.29725 * 0.02562 * 15 14 13 18 18 C 1.50701 * 125.57129 * 180.02562 * 17 15 14 19 19 O 1.42905 * 109.46937 * 329.99679 * 18 17 15 20 20 Si 1.86301 * 109.47149 * 209.99608 * 18 17 15 21 21 C 1.34481 * 108.85567 * 0.26177 * 17 15 14 22 22 C 1.53782 * 113.61155 * 239.99839 * 5 4 3 23 23 C 1.38163 * 119.94668 * 180.23290 * 4 3 2 24 24 C 1.38247 * 120.05296 * 359.47344 * 23 4 3 25 25 C 1.38287 * 120.11338 * 0.54762 * 24 23 4 26 26 C 1.38122 * 120.05190 * 359.70649 * 25 24 23 27 27 H 1.08999 * 109.47361 * 60.00044 * 1 2 3 28 28 H 1.08997 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47189 * 299.99587 * 1 2 3 30 30 H 1.09002 * 113.60962 * 25.43229 * 7 5 4 31 31 H 1.09001 * 113.61342 * 254.53398 * 7 5 4 32 32 H 0.96997 * 119.99782 * 287.49914 * 10 8 7 33 33 H 1.08002 * 125.80514 * 0.02562 * 14 13 11 34 34 H 1.09000 * 109.47314 * 269.99904 * 16 15 14 35 35 H 1.08998 * 109.47005 * 30.00283 * 16 15 14 36 36 H 1.09004 * 109.46875 * 150.00122 * 16 15 14 37 37 H 1.09001 * 109.46927 * 89.99423 * 18 17 15 38 38 H 0.96705 * 113.99788 * 300.00011 * 19 18 17 39 39 H 1.48493 * 110.00101 * 179.97438 * 20 18 17 40 40 H 1.48502 * 109.99925 * 301.31801 * 20 18 17 41 41 H 1.08000 * 126.83378 * 179.74593 * 21 17 15 42 42 H 1.09000 * 113.61227 * 105.47581 * 22 5 4 43 43 H 1.08995 * 113.61709 * 334.56873 * 22 5 4 44 44 H 1.07999 * 119.97186 * 179.74652 * 23 4 3 45 45 H 1.07995 * 119.94326 * 180.25743 * 24 23 4 46 46 H 1.08000 * 119.97667 * 179.72533 * 25 24 23 47 47 H 1.08004 * 120.02496 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 -0.0005 5 6 4.2537 0.0222 -0.0001 6 1 3.6591 -0.8704 -0.1945 7 6 5.5264 0.1158 -0.8584 8 6 6.2407 -0.6672 0.2558 9 1 7.2500 -0.3116 0.4630 10 7 6.1731 -2.1210 0.0875 11 6 7.2715 -2.8082 -0.2833 12 8 8.3189 -2.2214 -0.4786 13 6 7.2037 -4.2696 -0.4520 14 6 6.1081 -5.0679 -0.2706 15 7 6.4638 -6.3417 -0.5242 16 6 5.5645 -7.4950 -0.4381 17 6 7.7818 -6.4049 -0.8718 18 6 8.5357 -7.6606 -1.2263 19 8 7.9727 -8.7691 -0.5217 20 14 10.3260 -7.4658 -0.7489 21 6 8.2992 -5.1640 -0.8413 22 6 5.1807 -0.1086 1.2199 23 6 4.0560 2.5171 0.0043 24 6 3.3018 3.6758 -0.0013 25 6 1.9208 3.6048 -0.0003 26 6 1.2914 2.3753 0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 5.8955 1.1339 -0.9822 31 1 5.4588 -0.4286 -1.8003 32 1 5.3378 -2.5888 0.2429 33 1 5.1248 -4.7337 0.0256 34 1 5.5968 -7.9064 0.5708 35 1 4.5470 -7.1804 -0.6699 36 1 5.8808 -8.2564 -1.1512 37 1 8.4630 -7.8374 -2.2994 38 1 8.0033 -8.6800 0.4408 39 1 11.0803 -8.6978 -1.0927 40 1 10.9145 -6.2969 -1.4507 41 1 9.3180 -4.8817 -1.0623 42 1 4.8342 -0.8343 1.9557 43 1 5.4554 0.8480 1.6641 44 1 5.1344 2.5752 0.0081 45 1 3.7921 4.6381 -0.0016 46 1 1.3338 4.5114 -0.0002 47 1 0.2128 2.3203 0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13287730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:31 Heat of formation + Delta-G solvation = 6.357545 kcal Electronic energy + Delta-G solvation = -29217.227862 eV Core-core repulsion = 25140.986971 eV Total energy + Delta-G solvation = -4076.240890 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.47890 -41.64931 -40.57631 -39.16000 -38.00619 -37.71414 -34.60580 -33.69810 -32.04873 -31.12183 -31.03602 -28.17233 -27.64192 -26.66260 -26.51142 -25.81913 -23.93888 -23.02281 -22.49740 -21.10625 -20.61281 -20.05789 -19.14509 -18.90581 -17.46955 -17.32110 -17.09569 -16.77281 -16.67635 -16.64702 -16.57730 -15.85269 -15.48998 -15.34201 -15.33463 -15.28227 -15.03105 -14.76315 -14.60680 -14.27040 -14.09897 -13.97122 -13.47165 -13.40299 -13.23414 -13.18245 -13.00666 -12.96898 -12.74091 -12.29453 -12.17905 -12.09084 -12.00931 -11.73136 -11.62430 -11.13055 -11.03822 -10.74556 -10.10704 -9.75377 -9.58321 -9.22210 -9.06102 -4.99422 0.35535 0.49732 0.72647 1.02985 1.39458 1.63027 1.88893 2.04396 2.24679 2.39229 2.52440 2.77308 3.34820 3.51136 3.55349 3.69357 3.75561 3.86312 3.93052 3.96853 4.03195 4.12770 4.20600 4.30938 4.33851 4.37925 4.37972 4.44448 4.47403 4.50197 4.54354 4.67582 4.71836 4.74740 4.79576 4.81023 4.88241 4.91901 4.97863 4.99279 5.03500 5.11558 5.22685 5.41789 5.51359 5.60033 5.62802 5.71062 5.86584 5.95826 6.23579 6.45354 6.62316 6.64215 7.33301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.054 4.054 6 H 0.101 0.899 7 C -0.143 4.143 8 C 0.118 3.882 9 H 0.085 0.915 10 N -0.697 5.697 11 C 0.590 3.410 12 O -0.596 6.596 13 C -0.260 4.260 14 C 0.076 3.924 15 N -0.421 5.421 16 C 0.062 3.938 17 C -0.013 4.013 18 C -0.034 4.034 19 O -0.546 6.546 20 Si 0.785 3.215 21 C -0.168 4.168 22 C -0.122 4.122 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.094 4.094 26 C -0.217 4.217 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.209 0.791 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.396 0.604 39 H -0.284 1.284 40 H -0.300 1.300 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -2.800 4.325 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.073 4.073 6 H 0.119 0.881 7 C -0.182 4.182 8 C 0.012 3.988 9 H 0.104 0.896 10 N -0.348 5.348 11 C 0.380 3.620 12 O -0.478 6.478 13 C -0.270 4.270 14 C -0.061 4.061 15 N -0.095 5.095 16 C -0.078 4.078 17 C -0.123 4.123 18 C -0.145 4.145 19 O -0.354 6.354 20 Si 0.690 3.310 21 C -0.192 4.192 22 C -0.160 4.160 23 C -0.105 4.105 24 C -0.182 4.182 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.225 0.775 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.246 0.754 39 H -0.211 1.211 40 H -0.227 1.227 41 H 0.149 0.851 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.862 -3.130 3.344 8.250 hybrid contribution -0.880 0.437 -0.712 1.213 sum -7.742 -2.693 2.632 8.609 Atomic orbital electron populations 1.23278 0.76944 1.05360 1.01880 1.86012 1.22824 1.26730 1.88700 1.19075 0.92213 0.84742 0.97165 1.19253 0.90351 0.95974 1.06089 1.21311 0.93509 0.95403 0.97034 0.88086 1.23578 0.95604 1.01346 0.97634 1.21799 0.99777 0.79960 0.97217 0.89645 1.45340 1.12597 1.07111 1.69774 1.17714 0.82913 0.86417 0.74933 1.90749 1.31778 1.71629 1.53638 1.20262 0.96139 0.91810 1.18793 1.22381 0.99748 0.82693 1.01298 1.43720 1.08373 1.07756 1.49640 1.22503 0.93412 0.86387 1.05507 1.20795 0.85391 0.96409 1.09709 1.24662 1.07491 0.82761 0.99566 1.86456 1.83523 1.40588 1.24786 0.93239 0.71451 0.75910 0.90390 1.21722 0.98925 0.91424 1.07154 1.23366 0.94101 1.02448 0.96057 1.21101 1.00815 0.90981 0.97603 1.21353 0.94192 0.99187 1.03428 1.21255 0.95129 0.97626 0.97138 1.21491 1.00905 0.92427 1.08736 0.92278 0.86491 0.92013 0.88366 0.92030 0.75065 0.77462 0.88412 0.88117 0.88914 0.86795 0.75361 1.21138 1.22710 0.85095 0.89660 0.87993 0.84082 0.84377 0.84223 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.74 9.43 -92.39 -0.87 -1.61 16 3 C 0.11 0.42 6.66 22.51 0.15 0.57 16 4 C -0.12 -0.33 5.30 -19.77 -0.10 -0.44 16 5 C -0.05 -0.02 3.75 -11.01 -0.04 -0.06 16 6 H 0.10 0.03 7.32 -2.39 -0.02 0.01 16 7 C -0.14 -0.28 7.25 31.12 0.23 -0.06 16 8 C 0.12 0.31 4.32 45.52 0.20 0.51 16 9 H 0.09 0.60 7.46 -2.39 -0.02 0.59 16 10 N -0.70 -1.51 5.25 -443.45 -2.33 -3.84 16 11 C 0.59 5.82 7.81 86.62 0.68 6.49 16 12 O -0.60 -11.72 16.57 -4.15 -0.07 -11.79 16 13 C -0.26 -1.53 6.29 -19.04 -0.12 -1.65 16 14 C 0.08 -0.19 10.83 83.92 0.91 0.72 16 15 N -0.42 1.23 3.09 -533.23 -1.65 -0.41 16 16 C 0.06 -0.58 9.81 127.77 1.25 0.67 16 17 C -0.01 -0.02 6.14 40.98 0.25 0.23 16 18 C -0.03 0.05 2.87 71.24 0.20 0.25 16 19 O -0.55 2.50 10.31 -148.98 -1.54 0.96 16 20 Si 0.78 -0.17 31.28 68.60 2.15 1.98 16 21 C -0.17 -1.22 9.49 23.62 0.22 -1.00 16 22 C -0.12 0.17 7.29 31.12 0.23 0.40 16 23 C -0.09 -0.13 8.60 22.25 0.19 0.06 16 24 C -0.16 -0.17 10.04 22.28 0.22 0.06 16 25 C -0.09 -0.10 10.04 22.25 0.22 0.13 16 26 C -0.22 -0.41 9.04 22.37 0.20 -0.20 16 27 H 0.06 -0.30 7.66 -2.39 -0.02 -0.32 16 28 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.06 -0.34 7.66 -2.39 -0.02 -0.36 16 30 H 0.10 0.09 6.32 -2.39 -0.02 0.07 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.41 -1.82 7.64 -92.71 -0.71 -2.53 16 33 H 0.21 -2.28 7.45 -2.91 -0.02 -2.31 16 34 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 35 H 0.10 -1.29 8.13 -2.39 -0.02 -1.31 16 36 H 0.09 -0.67 6.73 -2.38 -0.02 -0.69 16 37 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 38 H 0.40 -4.66 8.70 -74.05 -0.64 -5.31 16 39 H -0.28 -1.44 7.11 99.48 0.71 -0.74 16 40 H -0.30 -2.33 6.78 99.48 0.67 -1.66 16 41 H 0.13 1.37 6.66 -2.91 -0.02 1.35 16 42 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.10 -0.21 7.71 -2.39 -0.02 -0.23 16 44 H 0.14 -0.24 6.67 -2.91 -0.02 -0.26 16 45 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 46 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 47 H 0.14 -0.26 6.30 -2.91 -0.02 -0.28 16 Total: 0.00 -25.44 384.25 1.36 -24.08 By element: Atomic # 1 Polarization: -16.76 SS G_CDS: -0.34 Total: -17.09 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.01 Total: 7.72 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -3.97 Total: -4.25 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -2.48 Total: -12.43 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: 2.15 Total: 1.98 kcal Total: -25.44 1.36 -24.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.436 kcal (2) G-P(sol) polarization free energy of solvation -25.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds