Wall clock time and date at job start Sun Mar 7 2021 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00140 * 2 1 4 4 C 1.38710 * 120.05218 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.03005 * 0.04371 * 4 3 2 6 6 H 1.08996 * 112.85322 * 11.19269 * 5 4 3 7 7 C 1.53784 * 113.61529 * 142.50410 * 5 4 3 8 8 C 1.53782 * 87.08163 * 139.97915 * 7 5 4 9 9 H 1.09007 * 113.68924 * 220.00986 * 8 7 5 10 10 N 1.46496 * 113.61471 * 89.11804 * 8 7 5 11 11 C 1.34777 * 120.00042 * 107.50092 * 10 8 7 12 12 O 1.21548 * 120.00111 * 359.97438 * 11 10 8 13 13 C 1.47842 * 119.99710 * 180.02562 * 11 10 8 14 14 C 1.39523 * 120.56370 * 359.72051 * 13 11 10 15 15 N 1.31694 * 120.56614 * 179.73563 * 14 13 11 16 16 C 1.31920 * 121.88256 * 0.57651 * 15 14 13 17 17 C 1.38351 * 121.07860 * 359.68663 * 16 15 14 18 18 C 1.50695 * 120.35135 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47446 * 119.97604 * 18 17 16 20 20 Si 1.86309 * 109.47001 * 359.97438 * 18 17 16 21 21 C 1.38354 * 119.30498 * 0.02562 * 17 16 15 22 22 C 1.53780 * 113.61284 * 239.99968 * 5 4 3 23 23 C 1.38168 * 119.93764 * 180.02562 * 4 3 2 24 24 C 1.38237 * 120.05838 * 359.97438 * 23 4 3 25 25 C 1.38290 * 120.11494 * 359.76939 * 24 23 4 26 26 C 1.38125 * 120.05209 * 0.51379 * 25 24 23 27 27 H 1.09001 * 109.47541 * 300.00453 * 1 2 3 28 28 H 1.09007 * 109.46731 * 60.00115 * 1 2 3 29 29 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.08995 * 113.61168 * 254.53180 * 7 5 4 31 31 H 1.08999 * 113.61415 * 25.42964 * 7 5 4 32 32 H 0.97001 * 120.00129 * 287.50138 * 10 8 7 33 33 H 1.07999 * 119.71134 * 0.02562 * 14 13 11 34 34 H 1.07994 * 119.45985 * 179.70489 * 16 15 14 35 35 H 1.08997 * 109.47819 * 239.97729 * 18 17 16 36 36 H 0.96698 * 114.00124 * 300.00125 * 19 18 17 37 37 H 1.48494 * 109.99882 * 58.67792 * 20 18 17 38 38 H 1.48496 * 109.99954 * 180.02562 * 20 18 17 39 39 H 1.08001 * 120.85790 * 180.02562 * 21 17 16 40 40 H 1.08997 * 113.61682 * 334.56956 * 22 5 4 41 41 H 1.09003 * 113.61674 * 105.38775 * 22 5 4 42 42 H 1.08006 * 119.96904 * 180.02562 * 23 4 3 43 43 H 1.08001 * 119.94607 * 179.97438 * 24 23 4 44 44 H 1.08004 * 119.97799 * 180.25141 * 25 24 23 45 45 H 1.08002 * 120.03152 * 179.74558 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2847 0.0005 5 6 4.2537 0.0221 0.0001 6 1 3.6592 -0.8703 -0.1955 7 6 5.5270 0.1166 -0.8571 8 6 6.2405 -0.6677 0.2568 9 1 7.2497 -0.3123 0.4652 10 7 6.1729 -2.1212 0.0869 11 6 7.2716 -2.8081 -0.2839 12 8 8.3184 -2.2216 -0.4777 13 6 7.2032 -4.2749 -0.4559 14 6 6.0089 -4.9606 -0.2319 15 7 5.9466 -6.2665 -0.3902 16 6 6.9988 -6.9756 -0.7514 17 6 8.2206 -6.3711 -0.9874 18 6 9.4118 -7.1969 -1.3999 19 8 9.8775 -6.7564 -2.6771 20 14 8.9181 -8.9904 -1.5036 21 6 8.3376 -5.0003 -0.8406 22 6 5.1798 -0.1102 1.2206 23 6 4.0560 2.5171 0.0011 24 6 3.3020 3.6757 0.0005 25 6 1.9209 3.6048 -0.0054 26 6 1.2914 2.3753 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 5.4600 -0.4267 -1.7996 31 1 5.8963 1.1347 -0.9796 32 1 5.3374 -2.5893 0.2412 33 1 5.1269 -4.4150 0.0693 34 1 6.9047 -8.0454 -0.8651 35 1 10.2069 -7.0810 -0.6635 36 1 9.2205 -6.8311 -3.3825 37 1 7.8128 -9.1572 -2.4811 38 1 10.0842 -9.8155 -1.9089 39 1 9.2793 -4.5024 -1.0188 40 1 5.4542 0.8460 1.6662 41 1 4.8320 -0.8356 1.9562 42 1 5.1345 2.5751 0.0011 43 1 3.7923 4.6380 0.0014 44 1 1.3340 4.5114 -0.0099 45 1 0.2128 2.3203 -0.0004 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:46 Heat of formation + Delta-G solvation = -5.252859 kcal Electronic energy + Delta-G solvation = -28476.887070 eV Core-core repulsion = 24427.454194 eV Total energy + Delta-G solvation = -4049.432877 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05356 -41.54144 -40.55683 -39.24924 -38.10909 -38.04265 -34.82938 -33.76705 -33.08658 -31.70084 -31.08375 -28.29325 -27.35193 -26.75214 -26.71638 -25.33870 -23.87996 -23.17021 -22.62480 -21.77475 -20.20994 -19.37251 -19.04352 -18.18073 -17.94795 -17.72234 -17.36899 -16.84772 -16.72308 -16.62676 -16.52275 -16.01412 -15.92139 -15.43703 -15.40118 -15.17847 -14.77495 -14.64190 -14.39719 -14.32303 -14.20471 -14.02672 -13.54986 -13.46993 -13.18620 -13.07863 -12.84546 -12.82322 -12.34645 -12.10576 -12.09988 -11.79257 -11.70478 -11.34005 -11.19492 -11.07049 -10.73812 -10.54709 -10.38530 -10.11824 -9.77445 -9.07924 -5.08383 -0.58152 -0.02738 0.33442 0.48973 1.11353 1.47551 1.71660 1.84518 1.94350 2.29525 2.62331 2.75145 3.00996 3.21247 3.36377 3.42122 3.59415 3.61655 3.64114 3.71678 3.74071 3.85868 3.94018 4.03195 4.09421 4.13031 4.17342 4.17713 4.19999 4.39909 4.42230 4.45422 4.52811 4.61222 4.66286 4.71151 4.76698 4.84304 4.89184 4.92271 4.97894 5.05758 5.12333 5.28988 5.38558 5.43540 5.56818 5.63295 5.80868 6.25648 6.34011 6.40552 6.62009 7.07590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.130 3.870 4 C -0.104 4.104 5 C -0.064 4.064 6 H 0.102 0.898 7 C -0.144 4.144 8 C 0.120 3.880 9 H 0.108 0.892 10 N -0.707 5.707 11 C 0.568 3.432 12 O -0.526 6.526 13 C -0.188 4.188 14 C 0.140 3.860 15 N -0.477 5.477 16 C 0.129 3.871 17 C -0.178 4.178 18 C -0.071 4.071 19 O -0.525 6.525 20 Si 0.685 3.315 21 C 0.012 3.988 22 C -0.135 4.135 23 C -0.080 4.080 24 C -0.154 4.154 25 C -0.083 4.083 26 C -0.207 4.207 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.401 0.599 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.125 0.875 36 H 0.377 0.623 37 H -0.255 1.255 38 H -0.251 1.251 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -0.421 2.322 5.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.085 3.915 4 C -0.104 4.104 5 C -0.082 4.082 6 H 0.120 0.880 7 C -0.183 4.183 8 C 0.014 3.986 9 H 0.126 0.874 10 N -0.358 5.358 11 C 0.354 3.646 12 O -0.403 6.403 13 C -0.193 4.193 14 C -0.019 4.019 15 N -0.185 5.185 16 C -0.028 4.028 17 C -0.180 4.180 18 C -0.181 4.181 19 O -0.332 6.332 20 Si 0.585 3.415 21 C -0.014 4.014 22 C -0.173 4.173 23 C -0.098 4.098 24 C -0.172 4.172 25 C -0.101 4.101 26 C -0.226 4.226 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.237 0.763 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.143 0.857 36 H 0.225 0.775 37 H -0.180 1.180 38 H -0.175 1.175 39 H 0.170 0.830 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.085 -1.210 2.156 4.775 hybrid contribution -0.257 1.152 -1.104 1.616 sum -4.342 -0.058 1.052 4.468 Atomic orbital electron populations 1.23084 0.78188 1.04156 1.01428 1.86043 1.21435 1.26784 1.88621 1.18862 0.91803 0.84280 0.96574 1.19020 0.90109 0.95325 1.05965 1.21411 0.93997 0.95937 0.96856 0.87958 1.23592 0.95188 1.01383 0.98135 1.21890 1.00678 0.79224 0.96766 0.87406 1.45563 1.12614 1.07698 1.69939 1.17991 0.83735 0.86191 0.76661 1.90820 1.29435 1.70206 1.49803 1.21027 0.96367 0.94564 1.07354 1.23048 0.96077 0.90384 0.92348 1.67734 1.30827 1.07455 1.12466 1.22898 0.87559 1.00152 0.92153 1.21369 0.97398 0.95420 1.03850 1.24995 0.97419 1.07992 0.87727 1.86645 1.42751 1.86144 1.17612 0.95086 0.80869 0.74698 0.90829 1.21636 0.98537 0.92563 0.88705 1.23442 0.95172 1.02301 0.96405 1.20881 1.00054 0.91015 0.97846 1.21083 0.93938 0.98526 1.03674 1.20983 0.94791 0.97055 0.97300 1.21269 1.00131 0.92430 1.08737 0.92569 0.92617 0.88060 0.90724 0.88562 0.76291 0.82164 0.82003 0.85732 0.77489 1.17970 1.17511 0.82967 0.88274 0.90442 0.85212 0.85749 0.85758 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.32 -0.33 9.43 -19.44 -0.18 -0.52 16 3 C 0.13 0.20 6.66 -39.22 -0.26 -0.06 16 4 C -0.10 -0.09 5.30 -104.48 -0.55 -0.64 16 5 C -0.06 0.04 3.75 -90.96 -0.34 -0.30 16 6 H 0.10 -0.04 7.32 -51.93 -0.38 -0.42 16 7 C -0.14 0.08 7.25 -25.92 -0.19 -0.11 16 8 C 0.12 -0.06 4.32 -67.12 -0.29 -0.35 16 9 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 10 N -0.71 0.46 5.22 -53.96 -0.28 0.18 16 11 C 0.57 1.15 7.78 -12.33 -0.10 1.05 16 12 O -0.53 -3.03 16.02 5.32 0.09 -2.95 16 13 C -0.19 -0.15 5.89 -104.82 -0.62 -0.77 16 14 C 0.14 -0.06 10.71 -17.13 -0.18 -0.24 16 15 N -0.48 -0.38 10.35 -12.91 -0.13 -0.51 16 16 C 0.13 -0.06 9.84 -17.47 -0.17 -0.23 16 17 C -0.18 0.06 5.39 -104.54 -0.56 -0.50 16 18 C -0.07 0.08 2.83 36.00 0.10 0.18 16 19 O -0.53 -0.33 12.78 -35.23 -0.45 -0.78 16 20 Si 0.69 -1.42 29.82 -169.99 -5.07 -6.49 16 21 C 0.01 0.01 9.31 -38.87 -0.36 -0.35 16 22 C -0.14 0.20 7.29 -25.92 -0.19 0.01 16 23 C -0.08 -0.01 8.61 -39.61 -0.34 -0.35 16 24 C -0.15 -0.03 10.04 -39.56 -0.40 -0.43 16 25 C -0.08 -0.03 10.04 -39.60 -0.40 -0.43 16 26 C -0.21 -0.16 9.04 -39.43 -0.36 -0.51 16 27 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 28 H 0.06 -0.13 7.66 -51.92 -0.40 -0.53 16 29 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 -0.10 6.31 -51.93 -0.33 -0.43 16 32 H 0.40 -1.21 6.77 -40.82 -0.28 -1.49 16 33 H 0.16 -0.54 6.42 -52.49 -0.34 -0.88 16 34 H 0.16 -0.43 4.88 -52.49 -0.26 -0.68 16 35 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 36 H 0.38 -0.84 8.70 45.56 0.40 -0.44 16 37 H -0.26 0.07 7.11 56.52 0.40 0.47 16 38 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 39 H 0.15 0.28 7.74 -52.49 -0.41 -0.13 16 40 H 0.10 -0.18 7.72 -51.93 -0.40 -0.58 16 41 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 42 H 0.13 -0.20 6.66 -52.48 -0.35 -0.55 16 43 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 44 H 0.12 -0.18 8.06 -52.48 -0.42 -0.60 16 45 H 0.13 -0.12 6.30 -52.49 -0.33 -0.45 16 LS Contribution 371.82 15.07 5.60 5.60 Total: 0.00 -8.78 371.82 -10.22 -19.00 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -5.58 Total: -10.44 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -4.22 Total: -3.10 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -0.42 Total: -0.33 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.55 Total: -4.24 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.07 Total: -6.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -8.78 -10.22 -19.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.744 kcal (2) G-P(sol) polarization free energy of solvation -8.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds