Wall clock time and date at job start Sun Mar 7 2021 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00140 * 2 1 4 4 C 1.38710 * 120.05218 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.03005 * 0.04371 * 4 3 2 6 6 H 1.08996 * 112.85322 * 11.19269 * 5 4 3 7 7 C 1.53784 * 113.61529 * 142.50410 * 5 4 3 8 8 C 1.53782 * 87.08163 * 139.97915 * 7 5 4 9 9 H 1.09007 * 113.68924 * 220.00986 * 8 7 5 10 10 N 1.46496 * 113.61471 * 89.11804 * 8 7 5 11 11 C 1.34777 * 120.00042 * 107.50092 * 10 8 7 12 12 O 1.21548 * 120.00111 * 359.97438 * 11 10 8 13 13 C 1.47842 * 119.99710 * 180.02562 * 11 10 8 14 14 C 1.39523 * 120.56370 * 359.72051 * 13 11 10 15 15 N 1.31694 * 120.56614 * 179.73563 * 14 13 11 16 16 C 1.31920 * 121.88256 * 0.57651 * 15 14 13 17 17 C 1.38351 * 121.07860 * 359.68663 * 16 15 14 18 18 C 1.50695 * 120.35135 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47446 * 119.97604 * 18 17 16 20 20 Si 1.86309 * 109.47001 * 359.97438 * 18 17 16 21 21 C 1.38354 * 119.30498 * 0.02562 * 17 16 15 22 22 C 1.53780 * 113.61284 * 239.99968 * 5 4 3 23 23 C 1.38168 * 119.93764 * 180.02562 * 4 3 2 24 24 C 1.38237 * 120.05838 * 359.97438 * 23 4 3 25 25 C 1.38290 * 120.11494 * 359.76939 * 24 23 4 26 26 C 1.38125 * 120.05209 * 0.51379 * 25 24 23 27 27 H 1.09001 * 109.47541 * 300.00453 * 1 2 3 28 28 H 1.09007 * 109.46731 * 60.00115 * 1 2 3 29 29 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.08995 * 113.61168 * 254.53180 * 7 5 4 31 31 H 1.08999 * 113.61415 * 25.42964 * 7 5 4 32 32 H 0.97001 * 120.00129 * 287.50138 * 10 8 7 33 33 H 1.07999 * 119.71134 * 0.02562 * 14 13 11 34 34 H 1.07994 * 119.45985 * 179.70489 * 16 15 14 35 35 H 1.08997 * 109.47819 * 239.97729 * 18 17 16 36 36 H 0.96698 * 114.00124 * 300.00125 * 19 18 17 37 37 H 1.48494 * 109.99882 * 58.67792 * 20 18 17 38 38 H 1.48496 * 109.99954 * 180.02562 * 20 18 17 39 39 H 1.08001 * 120.85790 * 180.02562 * 21 17 16 40 40 H 1.08997 * 113.61682 * 334.56956 * 22 5 4 41 41 H 1.09003 * 113.61674 * 105.38775 * 22 5 4 42 42 H 1.08006 * 119.96904 * 180.02562 * 23 4 3 43 43 H 1.08001 * 119.94607 * 179.97438 * 24 23 4 44 44 H 1.08004 * 119.97799 * 180.25141 * 25 24 23 45 45 H 1.08002 * 120.03152 * 179.74558 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2847 0.0005 5 6 4.2537 0.0221 0.0001 6 1 3.6592 -0.8703 -0.1955 7 6 5.5270 0.1166 -0.8571 8 6 6.2405 -0.6677 0.2568 9 1 7.2497 -0.3123 0.4652 10 7 6.1729 -2.1212 0.0869 11 6 7.2716 -2.8081 -0.2839 12 8 8.3184 -2.2216 -0.4777 13 6 7.2032 -4.2749 -0.4559 14 6 6.0089 -4.9606 -0.2319 15 7 5.9466 -6.2665 -0.3902 16 6 6.9988 -6.9756 -0.7514 17 6 8.2206 -6.3711 -0.9874 18 6 9.4118 -7.1969 -1.3999 19 8 9.8775 -6.7564 -2.6771 20 14 8.9181 -8.9904 -1.5036 21 6 8.3376 -5.0003 -0.8406 22 6 5.1798 -0.1102 1.2206 23 6 4.0560 2.5171 0.0011 24 6 3.3020 3.6757 0.0005 25 6 1.9209 3.6048 -0.0054 26 6 1.2914 2.3753 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 5.4600 -0.4267 -1.7996 31 1 5.8963 1.1347 -0.9796 32 1 5.3374 -2.5893 0.2412 33 1 5.1269 -4.4150 0.0693 34 1 6.9047 -8.0454 -0.8651 35 1 10.2069 -7.0810 -0.6635 36 1 9.2205 -6.8311 -3.3825 37 1 7.8128 -9.1572 -2.4811 38 1 10.0842 -9.8155 -1.9089 39 1 9.2793 -4.5024 -1.0188 40 1 5.4542 0.8460 1.6662 41 1 4.8320 -0.8356 1.9562 42 1 5.1345 2.5751 0.0011 43 1 3.7923 4.6380 0.0014 44 1 1.3340 4.5114 -0.0099 45 1 0.2128 2.3203 -0.0004 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:45 Heat of formation + Delta-G solvation = -4.410518 kcal Electronic energy + Delta-G solvation = -28476.850544 eV Core-core repulsion = 24427.454194 eV Total energy + Delta-G solvation = -4049.396350 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08415 -41.51663 -40.58411 -39.31174 -38.09320 -38.03241 -34.92200 -33.79167 -33.08230 -31.68202 -31.04555 -28.16579 -27.31583 -26.73031 -26.69604 -25.34070 -23.88491 -23.13327 -22.60899 -21.83622 -20.20452 -19.38741 -19.01241 -18.15483 -17.95634 -17.73284 -17.33718 -16.84557 -16.66347 -16.61260 -16.51469 -16.09308 -15.95761 -15.42417 -15.35582 -15.15180 -14.76959 -14.64631 -14.38895 -14.31130 -14.22061 -13.99996 -13.49453 -13.44987 -13.16362 -12.99120 -12.81570 -12.75648 -12.29575 -12.12017 -12.01774 -11.78530 -11.66757 -11.45628 -11.17132 -11.12297 -10.72294 -10.58641 -10.39631 -10.13929 -9.75925 -9.06975 -4.94587 -0.59245 -0.04560 0.34761 0.49133 1.22077 1.58383 1.61894 1.87574 1.97244 2.38637 2.60566 2.76406 3.08528 3.31238 3.38515 3.46182 3.63492 3.65356 3.67756 3.71469 3.75186 3.92133 3.99682 4.09266 4.10430 4.19624 4.26660 4.32815 4.37289 4.46095 4.48974 4.53387 4.62273 4.70208 4.74134 4.78940 4.80509 4.83281 4.92301 4.93882 5.00883 5.10353 5.15042 5.30828 5.40946 5.44140 5.59146 5.65408 5.85865 6.32861 6.40118 6.44578 6.63744 7.00317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.101 0.899 7 C -0.142 4.142 8 C 0.117 3.883 9 H 0.093 0.907 10 N -0.692 5.692 11 C 0.568 3.432 12 O -0.572 6.572 13 C -0.196 4.196 14 C 0.147 3.853 15 N -0.493 5.493 16 C 0.130 3.870 17 C -0.173 4.173 18 C -0.083 4.083 19 O -0.547 6.547 20 Si 0.776 3.224 21 C -0.001 4.001 22 C -0.123 4.123 23 C -0.086 4.086 24 C -0.164 4.164 25 C -0.094 4.094 26 C -0.218 4.218 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.414 0.586 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.130 0.870 36 H 0.387 0.613 37 H -0.273 1.273 38 H -0.298 1.298 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -0.778 2.896 6.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.119 0.881 7 C -0.180 4.180 8 C 0.012 3.988 9 H 0.111 0.889 10 N -0.343 5.343 11 C 0.355 3.645 12 O -0.452 6.452 13 C -0.202 4.202 14 C -0.011 4.011 15 N -0.201 5.201 16 C -0.026 4.026 17 C -0.175 4.175 18 C -0.191 4.191 19 O -0.355 6.355 20 Si 0.679 3.321 21 C -0.028 4.028 22 C -0.161 4.161 23 C -0.104 4.104 24 C -0.182 4.182 25 C -0.112 4.112 26 C -0.236 4.236 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.253 0.747 33 H 0.206 0.794 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.237 0.763 37 H -0.199 1.199 38 H -0.226 1.226 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.453 -1.547 2.749 6.300 hybrid contribution 0.148 1.274 -1.316 1.837 sum -5.306 -0.274 1.434 5.503 Atomic orbital electron populations 1.23276 0.76955 1.05344 1.01881 1.86015 1.22816 1.26767 1.88694 1.19099 0.92295 0.84708 0.97150 1.19239 0.90278 0.95995 1.06159 1.21350 0.93665 0.95466 0.97139 0.88098 1.23579 0.95335 1.01506 0.97581 1.21888 1.00250 0.79206 0.97483 0.88895 1.45471 1.12534 1.07728 1.68606 1.18202 0.83553 0.86698 0.76055 1.90794 1.31152 1.71100 1.52155 1.20975 0.96973 0.93880 1.08338 1.23417 0.96338 0.90209 0.91184 1.67813 1.31257 1.07861 1.13121 1.23239 0.87069 1.01132 0.91129 1.21372 0.97801 0.94760 1.03613 1.25299 0.97503 1.09000 0.87327 1.86613 1.43808 1.86577 1.18534 0.94078 0.77571 0.71377 0.89076 1.21647 0.98270 0.93400 0.89443 1.23385 0.94013 1.02631 0.96076 1.21104 1.00860 0.90894 0.97555 1.21356 0.94150 0.99250 1.03414 1.21258 0.95191 0.97587 0.97123 1.21494 1.00899 0.92472 1.08753 0.92017 0.92249 0.86559 0.91722 0.88049 0.74730 0.79449 0.79896 0.85219 0.76311 1.19911 1.22587 0.84472 0.87743 0.89619 0.83886 0.84354 0.84288 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.70 9.43 -92.48 -0.87 -1.57 16 3 C 0.11 0.36 6.66 22.51 0.15 0.51 16 4 C -0.12 -0.21 5.30 -19.77 -0.10 -0.32 16 5 C -0.06 0.07 3.75 -11.02 -0.04 0.03 16 6 H 0.10 -0.09 7.32 -2.39 -0.02 -0.11 16 7 C -0.14 0.08 7.25 31.12 0.23 0.31 16 8 C 0.12 -0.05 4.32 45.52 0.20 0.15 16 9 H 0.09 0.29 7.46 -2.38 -0.02 0.28 16 10 N -0.69 0.68 5.22 -442.91 -2.31 -1.63 16 11 C 0.57 2.93 7.78 86.79 0.68 3.60 16 12 O -0.57 -7.82 16.02 -3.87 -0.06 -7.88 16 13 C -0.20 -0.45 5.89 -19.99 -0.12 -0.56 16 14 C 0.15 -0.21 10.71 85.02 0.91 0.70 16 15 N -0.49 -0.30 10.35 -194.76 -2.01 -2.31 16 16 C 0.13 -0.22 9.84 84.71 0.83 0.61 16 17 C -0.17 0.09 5.39 -19.81 -0.11 -0.01 16 18 C -0.08 0.16 2.83 71.23 0.20 0.36 16 19 O -0.55 -1.11 12.78 -148.98 -1.90 -3.02 16 20 Si 0.78 -3.51 29.82 68.60 2.05 -1.46 16 21 C 0.00 0.00 9.31 22.73 0.21 0.21 16 22 C -0.12 0.40 7.29 31.12 0.23 0.63 16 23 C -0.09 -0.02 8.61 22.25 0.19 0.17 16 24 C -0.16 -0.04 10.04 22.28 0.22 0.19 16 25 C -0.09 -0.05 10.04 22.26 0.22 0.17 16 26 C -0.22 -0.34 9.04 22.37 0.20 -0.14 16 27 H 0.06 -0.33 7.66 -2.39 -0.02 -0.34 16 28 H 0.06 -0.29 7.66 -2.38 -0.02 -0.31 16 29 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.10 -0.17 6.31 -2.39 -0.02 -0.19 16 32 H 0.41 -2.74 6.77 -92.71 -0.63 -3.37 16 33 H 0.19 -1.54 6.42 -2.91 -0.02 -1.56 16 34 H 0.18 -1.25 4.88 -2.91 -0.01 -1.27 16 35 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.39 -1.47 8.70 -74.06 -0.64 -2.12 16 37 H -0.27 0.40 7.11 99.48 0.71 1.11 16 38 H -0.30 -1.05 7.11 99.48 0.71 -0.35 16 39 H 0.14 0.84 7.74 -2.91 -0.02 0.81 16 40 H 0.10 -0.42 7.72 -2.39 -0.02 -0.43 16 41 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.14 -0.48 6.66 -2.91 -0.02 -0.50 16 43 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 44 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 45 H 0.14 -0.27 6.30 -2.91 -0.02 -0.29 16 Total: 0.00 -21.42 371.82 -0.08 -21.50 By element: Atomic # 1 Polarization: -11.10 SS G_CDS: -0.18 Total: -11.28 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.22 Total: 7.64 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -4.33 Total: -3.94 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -2.84 Total: -12.46 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.05 Total: -1.46 kcal Total: -21.42 -0.08 -21.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.091 kcal (2) G-P(sol) polarization free energy of solvation -21.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds