Wall clock time and date at job start Sun Mar 7 2021 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00217 * 2 1 4 4 C 1.38715 * 120.05472 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.02942 * 359.97438 * 4 3 2 6 6 H 1.08998 * 112.85116 * 348.52948 * 5 4 3 7 7 C 1.53786 * 113.61439 * 119.72500 * 5 4 3 8 8 C 1.53775 * 87.08359 * 139.98413 * 7 5 4 9 9 H 1.08997 * 113.61564 * 219.93715 * 8 7 5 10 10 N 1.46496 * 113.61723 * 89.11431 * 8 7 5 11 11 C 1.34781 * 120.00248 * 155.00185 * 10 8 7 12 12 O 1.21615 * 119.99918 * 359.97438 * 11 10 8 13 13 C 1.47375 * 120.00112 * 180.02562 * 11 10 8 14 14 C 1.36424 * 127.18689 * 179.97438 * 13 11 10 15 15 C 1.50692 * 125.80534 * 0.03626 * 14 13 11 16 16 O 1.33652 * 108.38914 * 179.97438 * 14 13 11 17 17 C 1.34214 * 110.91281 * 359.97438 * 16 14 13 18 18 C 1.50706 * 125.43537 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.46818 * 120.02812 * 18 17 16 20 20 Si 1.86295 * 109.47320 * 0.02614 * 18 17 16 21 21 C 1.34171 * 109.12464 * 0.26477 * 17 16 14 22 22 C 1.53782 * 113.61680 * 217.22094 * 5 4 3 23 23 C 1.38168 * 119.94030 * 179.72728 * 4 3 2 24 24 C 1.38245 * 120.05782 * 0.27061 * 23 4 3 25 25 C 1.38282 * 120.11228 * 359.97438 * 24 23 4 26 26 C 1.38126 * 120.05548 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47216 * 299.99905 * 1 2 3 28 28 H 1.09000 * 109.46990 * 59.99915 * 1 2 3 29 29 H 1.08998 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.08998 * 113.61553 * 25.43203 * 7 5 4 31 31 H 1.09000 * 113.68895 * 254.54282 * 7 5 4 32 32 H 0.96998 * 120.00355 * 335.00068 * 10 8 7 33 33 H 1.08998 * 109.46965 * 179.97438 * 15 14 13 34 34 H 1.09010 * 109.46744 * 299.98120 * 15 14 13 35 35 H 1.08995 * 109.47480 * 59.98137 * 15 14 13 36 36 H 1.09004 * 109.46950 * 240.02327 * 18 17 16 37 37 H 0.96696 * 113.99807 * 299.99439 * 19 18 17 38 38 H 1.48501 * 109.99890 * 58.68252 * 20 18 17 39 39 H 1.48501 * 110.00190 * 179.97438 * 20 18 17 40 40 H 1.08002 * 127.02521 * 179.73072 * 21 17 16 41 41 H 1.09000 * 113.61291 * 105.47112 * 22 5 4 42 42 H 1.09001 * 113.61350 * 334.56729 * 22 5 4 43 43 H 1.08004 * 119.97124 * 180.25602 * 23 4 3 44 44 H 1.07997 * 119.94138 * 179.97438 * 24 23 4 45 45 H 1.07997 * 119.97440 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.02983 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2847 0.0005 5 6 4.2537 0.0221 0.0017 6 1 3.6598 -0.8698 0.2018 7 6 5.1759 -0.1135 -1.2215 8 6 6.2396 -0.6685 -0.2596 9 1 7.2481 -0.3137 -0.4722 10 7 6.1726 -2.1215 -0.0855 11 6 7.2725 -2.8075 0.2836 12 8 8.3207 -2.2203 0.4716 13 6 7.2051 -4.2693 0.4582 14 6 8.2204 -5.1036 0.8247 15 6 9.6364 -4.6881 1.1296 16 8 7.7452 -6.3520 0.8686 17 6 6.4433 -6.3808 0.5436 18 6 5.5837 -7.6174 0.4884 19 8 4.4996 -7.4855 1.4101 20 14 6.6073 -9.1062 0.9425 21 6 6.0310 -5.1338 0.2697 22 6 5.5297 0.1189 0.8545 23 6 4.0560 2.5170 -0.0052 24 6 3.3020 3.6757 -0.0057 25 6 1.9210 3.6048 -0.0012 26 6 1.2915 2.3753 0.0045 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 5.4488 0.8414 -1.6705 31 1 4.8274 -0.8415 -1.9541 32 1 5.3366 -2.5900 -0.2358 33 1 10.2241 -5.5672 1.3940 34 1 10.0718 -4.2102 0.2519 35 1 9.6376 -3.9862 1.9635 36 1 5.1897 -7.7413 -0.5204 37 1 4.7768 -7.3716 2.3295 38 1 7.1762 -8.9355 2.3035 39 1 5.7709 -10.3322 0.8923 40 1 5.0387 -4.8273 -0.0269 41 1 5.4659 -0.4219 1.7987 42 1 5.8995 1.1374 0.9730 43 1 5.1345 2.5751 -0.0089 44 1 3.7924 4.6379 -0.0098 45 1 1.3341 4.5114 -0.0020 46 1 0.2129 2.3204 0.0085 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:49 Heat of formation + Delta-G solvation = -33.180072 kcal Electronic energy + Delta-G solvation = -29515.449728 eV Core-core repulsion = 25339.775696 eV Total energy + Delta-G solvation = -4175.674032 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.71460 -41.68904 -40.62248 -39.18737 -38.20237 -38.01472 -34.64977 -33.91700 -33.08426 -31.77524 -31.06007 -29.41834 -28.26235 -26.68886 -26.56257 -25.59993 -24.25617 -23.13755 -22.68261 -22.06306 -20.72793 -19.94121 -19.15300 -18.93159 -17.99042 -17.67497 -17.36492 -16.91092 -16.81402 -16.69888 -16.49892 -16.03837 -15.89916 -15.61462 -15.38623 -15.15736 -15.02778 -14.63085 -14.34302 -14.16821 -14.09564 -14.00418 -13.87281 -13.82355 -13.47940 -13.12593 -13.05421 -12.96055 -12.85689 -12.78897 -12.30621 -12.09592 -12.07748 -11.72685 -11.65006 -11.13666 -11.05655 -10.85653 -10.70182 -10.01388 -9.74654 -9.52686 -9.05247 -5.00833 0.33511 0.36244 0.51388 0.85444 1.11938 1.43470 1.69012 1.89951 2.19245 2.32095 2.39489 2.77860 3.08553 3.35702 3.48966 3.67337 3.71476 3.79743 3.81454 3.89121 3.99567 4.07040 4.14309 4.15865 4.19495 4.21317 4.27581 4.42752 4.43320 4.45733 4.54656 4.61055 4.63544 4.67975 4.71452 4.75389 4.77527 4.90332 4.95941 5.04136 5.08965 5.12292 5.20624 5.23722 5.41341 5.51367 5.60900 5.69615 5.83559 5.92221 6.19961 6.43221 6.56354 7.29757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.103 4.103 5 C -0.063 4.063 6 H 0.101 0.899 7 C -0.136 4.136 8 C 0.122 3.878 9 H 0.107 0.893 10 N -0.706 5.706 11 C 0.595 3.405 12 O -0.538 6.538 13 C -0.253 4.253 14 C 0.095 3.905 15 C -0.078 4.078 16 O -0.167 6.167 17 C -0.056 4.056 18 C -0.034 4.034 19 O -0.521 6.521 20 Si 0.702 3.298 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.080 4.080 24 C -0.154 4.154 25 C -0.084 4.084 26 C -0.207 4.207 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.381 0.619 38 H -0.256 1.256 39 H -0.249 1.249 40 H 0.158 0.842 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -0.337 -1.580 2.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.119 0.881 7 C -0.174 4.174 8 C 0.016 3.984 9 H 0.125 0.875 10 N -0.357 5.357 11 C 0.384 3.616 12 O -0.416 6.416 13 C -0.258 4.258 14 C 0.042 3.958 15 C -0.134 4.134 16 O -0.064 6.064 17 C -0.104 4.104 18 C -0.144 4.144 19 O -0.327 6.327 20 Si 0.601 3.399 21 C -0.167 4.167 22 C -0.183 4.183 23 C -0.098 4.098 24 C -0.172 4.172 25 C -0.102 4.102 26 C -0.226 4.226 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.229 0.771 38 H -0.180 1.180 39 H -0.173 1.173 40 H 0.175 0.825 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.867 -1.114 -1.357 1.958 hybrid contribution -1.695 0.813 0.773 2.033 sum -2.562 -0.300 -0.584 2.645 Atomic orbital electron populations 1.23078 0.78227 1.04129 1.01414 1.86047 1.21405 1.26802 1.88617 1.18869 0.91822 0.84272 0.96604 1.19043 0.90116 0.95373 1.05809 1.21399 0.94005 0.95826 0.96934 0.88050 1.23436 0.95340 1.02193 0.96401 1.21834 1.00437 0.79613 0.96486 0.87542 1.45441 1.12660 1.07335 1.70261 1.17152 0.83434 0.85072 0.75987 1.90796 1.29462 1.70215 1.51121 1.21120 0.94636 0.94212 1.15796 1.22910 0.96614 0.80320 0.95984 1.20561 0.86081 1.02140 1.04580 1.83679 1.24316 1.29927 1.68520 1.22543 0.82470 0.98153 1.07202 1.24341 0.91666 0.99970 0.98382 1.86661 1.30963 1.94474 1.20640 0.94376 0.83161 0.75848 0.86499 1.22582 0.98978 0.91329 1.03790 1.23590 0.95217 1.01292 0.98215 1.20884 1.00060 0.91001 0.97853 1.21080 0.93931 0.98511 1.03701 1.20974 0.94792 0.97033 0.97383 1.21263 1.00111 0.92429 1.08773 0.92610 0.92584 0.88100 0.88392 0.90581 0.76363 0.90137 0.88200 0.88364 0.84528 0.77083 1.18026 1.17298 0.82458 0.90815 0.88678 0.85202 0.85752 0.85770 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.54 9.43 -19.42 -0.18 -0.73 16 3 C 0.13 0.27 6.66 -39.21 -0.26 0.01 16 4 C -0.10 -0.15 5.30 -104.48 -0.55 -0.71 16 5 C -0.06 -0.02 3.75 -90.96 -0.34 -0.36 16 6 H 0.10 0.08 7.33 -51.93 -0.38 -0.30 16 7 C -0.14 0.08 7.29 -25.92 -0.19 -0.11 16 8 C 0.12 0.06 4.32 -67.12 -0.29 -0.23 16 9 H 0.11 0.18 7.46 -51.93 -0.39 -0.21 16 10 N -0.71 -0.55 5.26 -54.11 -0.28 -0.84 16 11 C 0.59 1.87 7.81 -12.54 -0.10 1.77 16 12 O -0.54 -3.12 15.26 5.26 0.08 -3.04 16 13 C -0.25 -0.55 6.31 -103.28 -0.65 -1.20 16 14 C 0.10 0.16 7.37 -34.97 -0.26 -0.09 16 15 C -0.08 0.01 9.14 36.00 0.33 0.34 16 16 O -0.17 -0.21 8.89 7.66 0.07 -0.15 16 17 C -0.06 -0.03 6.20 -35.74 -0.22 -0.25 16 18 C -0.03 0.03 2.97 36.01 0.11 0.14 16 19 O -0.52 -0.03 12.87 -35.23 -0.45 -0.48 16 20 Si 0.70 -0.81 32.09 -169.99 -5.45 -6.27 16 21 C -0.15 -0.10 10.46 -37.46 -0.39 -0.49 16 22 C -0.14 -0.04 7.25 -25.91 -0.19 -0.23 16 23 C -0.08 -0.05 8.61 -39.60 -0.34 -0.39 16 24 C -0.15 -0.09 10.04 -39.56 -0.40 -0.49 16 25 C -0.08 -0.06 10.04 -39.61 -0.40 -0.46 16 26 C -0.21 -0.25 9.04 -39.43 -0.36 -0.60 16 27 H 0.06 -0.11 7.65 -51.93 -0.40 -0.50 16 28 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 29 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.10 -0.10 7.72 -51.93 -0.40 -0.50 16 31 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 32 H 0.40 -0.39 7.87 -40.82 -0.32 -0.71 16 33 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 34 H 0.10 0.00 8.08 -51.92 -0.42 -0.42 16 35 H 0.10 0.03 8.08 -51.93 -0.42 -0.39 16 36 H 0.14 -0.34 7.96 -51.93 -0.41 -0.76 16 37 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 38 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 39 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 40 H 0.16 -0.18 7.74 -52.49 -0.41 -0.58 16 41 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 42 H 0.09 -0.04 6.31 -51.93 -0.33 -0.37 16 43 H 0.13 -0.14 6.66 -52.48 -0.35 -0.49 16 44 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 45 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 LS Contribution 384.63 15.07 5.80 5.80 Total: 0.00 -7.72 384.63 -10.23 -17.95 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: -6.29 Total: -9.86 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.51 Total: -2.39 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -0.28 Total: -0.84 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.49 Total: -4.40 kcal Atomic # 14 Polarization: -0.81 SS G_CDS: -5.45 Total: -6.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -7.72 -10.23 -17.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.230 kcal (2) G-P(sol) polarization free energy of solvation -7.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds