Wall clock time and date at job start Sun Mar 7 2021 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00217 * 2 1 4 4 C 1.38715 * 120.05472 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.02942 * 359.97438 * 4 3 2 6 6 H 1.08998 * 112.85116 * 348.52948 * 5 4 3 7 7 C 1.53786 * 113.61439 * 119.72500 * 5 4 3 8 8 C 1.53775 * 87.08359 * 139.98413 * 7 5 4 9 9 H 1.08997 * 113.61564 * 219.93715 * 8 7 5 10 10 N 1.46496 * 113.61723 * 89.11431 * 8 7 5 11 11 C 1.34781 * 120.00248 * 155.00185 * 10 8 7 12 12 O 1.21615 * 119.99918 * 359.97438 * 11 10 8 13 13 C 1.47375 * 120.00112 * 180.02562 * 11 10 8 14 14 C 1.36424 * 127.18689 * 179.97438 * 13 11 10 15 15 C 1.50692 * 125.80534 * 0.03626 * 14 13 11 16 16 O 1.33652 * 108.38914 * 179.97438 * 14 13 11 17 17 C 1.34214 * 110.91281 * 359.97438 * 16 14 13 18 18 C 1.50706 * 125.43537 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.46818 * 120.02812 * 18 17 16 20 20 Si 1.86295 * 109.47320 * 0.02614 * 18 17 16 21 21 C 1.34171 * 109.12464 * 0.26477 * 17 16 14 22 22 C 1.53782 * 113.61680 * 217.22094 * 5 4 3 23 23 C 1.38168 * 119.94030 * 179.72728 * 4 3 2 24 24 C 1.38245 * 120.05782 * 0.27061 * 23 4 3 25 25 C 1.38282 * 120.11228 * 359.97438 * 24 23 4 26 26 C 1.38126 * 120.05548 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47216 * 299.99905 * 1 2 3 28 28 H 1.09000 * 109.46990 * 59.99915 * 1 2 3 29 29 H 1.08998 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.08998 * 113.61553 * 25.43203 * 7 5 4 31 31 H 1.09000 * 113.68895 * 254.54282 * 7 5 4 32 32 H 0.96998 * 120.00355 * 335.00068 * 10 8 7 33 33 H 1.08998 * 109.46965 * 179.97438 * 15 14 13 34 34 H 1.09010 * 109.46744 * 299.98120 * 15 14 13 35 35 H 1.08995 * 109.47480 * 59.98137 * 15 14 13 36 36 H 1.09004 * 109.46950 * 240.02327 * 18 17 16 37 37 H 0.96696 * 113.99807 * 299.99439 * 19 18 17 38 38 H 1.48501 * 109.99890 * 58.68252 * 20 18 17 39 39 H 1.48501 * 110.00190 * 179.97438 * 20 18 17 40 40 H 1.08002 * 127.02521 * 179.73072 * 21 17 16 41 41 H 1.09000 * 113.61291 * 105.47112 * 22 5 4 42 42 H 1.09001 * 113.61350 * 334.56729 * 22 5 4 43 43 H 1.08004 * 119.97124 * 180.25602 * 23 4 3 44 44 H 1.07997 * 119.94138 * 179.97438 * 24 23 4 45 45 H 1.07997 * 119.97440 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.02983 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2847 0.0005 5 6 4.2537 0.0221 0.0017 6 1 3.6598 -0.8698 0.2018 7 6 5.1759 -0.1135 -1.2215 8 6 6.2396 -0.6685 -0.2596 9 1 7.2481 -0.3137 -0.4722 10 7 6.1726 -2.1215 -0.0855 11 6 7.2725 -2.8075 0.2836 12 8 8.3207 -2.2203 0.4716 13 6 7.2051 -4.2693 0.4582 14 6 8.2204 -5.1036 0.8247 15 6 9.6364 -4.6881 1.1296 16 8 7.7452 -6.3520 0.8686 17 6 6.4433 -6.3808 0.5436 18 6 5.5837 -7.6174 0.4884 19 8 4.4996 -7.4855 1.4101 20 14 6.6073 -9.1062 0.9425 21 6 6.0310 -5.1338 0.2697 22 6 5.5297 0.1189 0.8545 23 6 4.0560 2.5170 -0.0052 24 6 3.3020 3.6757 -0.0057 25 6 1.9210 3.6048 -0.0012 26 6 1.2915 2.3753 0.0045 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 5.4488 0.8414 -1.6705 31 1 4.8274 -0.8415 -1.9541 32 1 5.3366 -2.5900 -0.2358 33 1 10.2241 -5.5672 1.3940 34 1 10.0718 -4.2102 0.2519 35 1 9.6376 -3.9862 1.9635 36 1 5.1897 -7.7413 -0.5204 37 1 4.7768 -7.3716 2.3295 38 1 7.1762 -8.9355 2.3035 39 1 5.7709 -10.3322 0.8923 40 1 5.0387 -4.8273 -0.0269 41 1 5.4659 -0.4219 1.7987 42 1 5.8995 1.1374 0.9730 43 1 5.1345 2.5751 -0.0089 44 1 3.7924 4.6379 -0.0098 45 1 1.3341 4.5114 -0.0020 46 1 0.2129 2.3204 0.0085 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:48 Heat of formation + Delta-G solvation = -29.617512 kcal Electronic energy + Delta-G solvation = -29515.295244 eV Core-core repulsion = 25339.775696 eV Total energy + Delta-G solvation = -4175.519548 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.78020 -41.73040 -40.72350 -39.30355 -38.17276 -38.03574 -34.80356 -33.98384 -33.11112 -31.80606 -31.06002 -29.41567 -28.18043 -26.70595 -26.61800 -25.61928 -24.32361 -23.14869 -22.71373 -22.13611 -20.84206 -19.98358 -19.16959 -18.94429 -18.05074 -17.73026 -17.38142 -16.97123 -16.86309 -16.67934 -16.54948 -16.06776 -15.94514 -15.70295 -15.36408 -15.19244 -15.08149 -14.71277 -14.36570 -14.19330 -14.14201 -14.03637 -13.90344 -13.83473 -13.47654 -13.15493 -13.00411 -12.93823 -12.83334 -12.76684 -12.29431 -12.18413 -12.03672 -11.77521 -11.66772 -11.22192 -11.16756 -10.97001 -10.74096 -10.13770 -9.77167 -9.58738 -9.08469 -4.93938 0.21610 0.33726 0.47882 0.80800 1.17659 1.41653 1.69850 1.91242 2.09945 2.21737 2.36916 2.75365 3.15915 3.37802 3.46125 3.65204 3.66564 3.74463 3.77659 3.91211 3.99046 4.09531 4.10418 4.18417 4.30529 4.34606 4.38470 4.44700 4.46296 4.48275 4.60619 4.61312 4.66294 4.69054 4.71599 4.75604 4.77657 4.86296 4.93359 4.99577 5.09477 5.12442 5.17479 5.20344 5.40035 5.47124 5.58579 5.65294 5.85023 5.87489 6.32889 6.43087 6.46064 7.13390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.117 4.117 5 C -0.058 4.058 6 H 0.095 0.905 7 C -0.124 4.124 8 C 0.120 3.880 9 H 0.095 0.905 10 N -0.696 5.696 11 C 0.591 3.409 12 O -0.571 6.571 13 C -0.270 4.270 14 C 0.087 3.913 15 C -0.076 4.076 16 O -0.170 6.170 17 C -0.057 4.057 18 C -0.033 4.033 19 O -0.534 6.534 20 Si 0.772 3.228 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.086 4.086 24 C -0.162 4.162 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.390 0.610 38 H -0.295 1.295 39 H -0.282 1.282 40 H 0.174 0.826 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -0.174 -2.179 3.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.113 0.887 7 C -0.162 4.162 8 C 0.014 3.986 9 H 0.113 0.887 10 N -0.347 5.347 11 C 0.380 3.620 12 O -0.452 6.452 13 C -0.274 4.274 14 C 0.033 3.967 15 C -0.132 4.132 16 O -0.067 6.067 17 C -0.105 4.105 18 C -0.143 4.143 19 O -0.342 6.342 20 Si 0.676 3.324 21 C -0.167 4.167 22 C -0.179 4.179 23 C -0.104 4.104 24 C -0.180 4.180 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.175 0.825 37 H 0.240 0.760 38 H -0.221 1.221 39 H -0.209 1.209 40 H 0.192 0.808 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.530 -0.943 -1.973 2.669 hybrid contribution -1.547 0.753 1.012 1.996 sum -3.078 -0.189 -0.961 3.230 Atomic orbital electron populations 1.23270 0.76952 1.05276 1.01942 1.86018 1.22852 1.26911 1.88729 1.19117 0.92325 0.84709 0.97275 1.19249 0.90284 0.95999 1.06189 1.21308 0.93713 0.95307 0.97262 0.88701 1.23380 0.94247 1.02528 0.96008 1.21846 1.00139 0.79407 0.97188 0.88714 1.45388 1.12524 1.07524 1.69235 1.17358 0.83394 0.85556 0.75654 1.90770 1.30690 1.70913 1.52869 1.21203 0.95650 0.93908 1.16668 1.23228 0.97247 0.80446 0.95737 1.20584 0.85610 1.02785 1.04213 1.83683 1.24803 1.29737 1.68524 1.22834 0.82250 0.98666 1.06763 1.24520 0.91380 0.99049 0.99313 1.86640 1.31580 1.94419 1.21552 0.93510 0.81206 0.73629 0.84053 1.22771 0.99246 0.91066 1.03654 1.23572 0.95284 1.01514 0.97510 1.21109 1.00905 0.90817 0.97522 1.21366 0.94125 0.99248 1.03299 1.21264 0.95217 0.97551 0.97085 1.21490 1.00886 0.92445 1.08755 0.92155 0.91954 0.86708 0.87610 0.90147 0.75282 0.88219 0.88447 0.88960 0.82545 0.76007 1.22145 1.20859 0.80842 0.92015 0.87864 0.83793 0.84180 0.84165 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.26 9.43 -92.40 -0.87 -2.14 16 3 C 0.11 0.50 6.66 22.51 0.15 0.65 16 4 C -0.12 -0.37 5.30 -19.77 -0.10 -0.48 16 5 C -0.06 -0.05 3.75 -11.01 -0.04 -0.09 16 6 H 0.09 0.21 7.33 -2.39 -0.02 0.19 16 7 C -0.12 0.15 7.29 31.12 0.23 0.38 16 8 C 0.12 0.18 4.32 45.52 0.20 0.38 16 9 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 10 N -0.70 -1.50 5.26 -443.35 -2.33 -3.83 16 11 C 0.59 4.30 7.81 86.65 0.68 4.98 16 12 O -0.57 -7.51 15.26 -4.08 -0.06 -7.57 16 13 C -0.27 -1.32 6.31 -18.99 -0.12 -1.44 16 14 C 0.09 0.35 7.37 25.26 0.19 0.53 16 15 C -0.08 -0.04 9.14 71.23 0.65 0.61 16 16 O -0.17 -0.44 8.89 4.48 0.04 -0.40 16 17 C -0.06 -0.03 6.20 24.76 0.15 0.12 16 18 C -0.03 0.09 2.97 71.24 0.21 0.30 16 19 O -0.53 0.28 12.87 -148.98 -1.92 -1.64 16 20 Si 0.77 -1.78 32.09 68.60 2.20 0.42 16 21 C -0.15 -0.15 10.46 23.65 0.25 0.10 16 22 C -0.14 -0.15 7.25 31.12 0.23 0.07 16 23 C -0.09 -0.09 8.61 22.25 0.19 0.10 16 24 C -0.16 -0.11 10.04 22.28 0.22 0.11 16 25 C -0.09 -0.10 10.04 22.25 0.22 0.12 16 26 C -0.22 -0.52 9.04 22.37 0.20 -0.32 16 27 H 0.06 -0.23 7.65 -2.39 -0.02 -0.25 16 28 H 0.06 -0.26 7.67 -2.39 -0.02 -0.28 16 29 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.11 -0.27 7.72 -2.39 -0.02 -0.29 16 31 H 0.08 -0.15 8.14 -2.39 -0.02 -0.16 16 32 H 0.41 -0.73 7.87 -92.71 -0.73 -1.46 16 33 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.10 0.11 8.08 -2.38 -0.02 0.09 16 35 H 0.09 0.17 8.08 -2.39 -0.02 0.15 16 36 H 0.16 -1.04 7.96 -2.39 -0.02 -1.06 16 37 H 0.39 -2.03 8.70 -74.06 -0.64 -2.67 16 38 H -0.29 -1.21 7.11 99.48 0.71 -0.50 16 39 H -0.28 -0.92 7.11 99.48 0.71 -0.21 16 40 H 0.17 -0.54 7.74 -2.91 -0.02 -0.56 16 41 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.10 -0.07 6.31 -2.39 -0.02 -0.09 16 43 H 0.14 -0.39 6.66 -2.91 -0.02 -0.41 16 44 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 45 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 46 H 0.14 -0.16 6.30 -2.91 -0.02 -0.18 16 Total: 0.00 -18.46 384.63 1.37 -17.09 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.31 Total: -9.13 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 4.61 Total: 7.19 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -2.33 Total: -3.83 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -2.81 Total: -11.74 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: 2.20 Total: 0.42 kcal Total: -18.46 1.37 -17.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.523 kcal (2) G-P(sol) polarization free energy of solvation -18.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds