Wall clock time and date at job start Sun Mar 7 2021 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 116.99817 * 2 1 4 4 C 1.38713 * 120.05328 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.02941 * 0.02562 * 4 3 2 6 6 H 1.09004 * 112.90785 * 10.97074 * 5 4 3 7 7 C 1.53784 * 113.61665 * 142.22467 * 5 4 3 8 8 C 1.53778 * 87.08081 * 139.98095 * 7 5 4 9 9 H 1.09007 * 113.69188 * 220.01042 * 8 7 5 10 10 N 1.46498 * 113.61736 * 89.11728 * 8 7 5 11 11 C 1.34778 * 120.00186 * 107.49948 * 10 8 7 12 12 O 1.21593 * 120.00005 * 0.02562 * 11 10 8 13 13 C 1.47560 * 119.99904 * 180.02562 * 11 10 8 14 14 C 1.39828 * 120.00373 * 359.72859 * 13 11 10 15 15 C 1.36557 * 119.99928 * 179.67268 * 14 13 11 16 16 C 1.39831 * 120.00076 * 0.61894 * 15 14 13 17 17 C 1.47561 * 119.99997 * 179.69264 * 16 15 14 18 18 C 1.34982 * 125.27436 * 359.70456 * 17 16 15 19 19 C 1.37795 * 114.69873 * 179.82643 * 18 17 16 20 20 C 1.33745 * 115.08320 * 0.46087 * 19 18 17 21 21 C 1.50700 * 125.12341 * 179.74979 * 20 19 18 22 22 O 1.42895 * 109.47082 * 300.02695 * 21 20 19 23 23 Si 1.86297 * 109.47069 * 180.02562 * 21 20 19 24 24 S 1.75864 * 109.75835 * 359.75044 * 20 19 18 25 25 C 1.39818 * 119.99897 * 359.67818 * 16 15 14 26 26 C 1.36562 * 120.00347 * 359.97438 * 25 16 15 27 27 C 1.53778 * 87.08449 * 334.56700 * 8 7 5 28 28 C 1.38174 * 119.94243 * 179.72216 * 4 3 2 29 29 C 1.38245 * 120.05593 * 0.27675 * 28 4 3 30 30 C 1.38285 * 120.11146 * 359.97438 * 29 28 4 31 31 C 1.38129 * 120.05795 * 359.97438 * 30 29 28 32 32 H 1.08999 * 109.47374 * 300.00124 * 1 2 3 33 33 H 1.09002 * 109.47200 * 60.00271 * 1 2 3 34 34 H 1.09007 * 109.47467 * 179.97438 * 1 2 3 35 35 H 1.08993 * 113.61313 * 254.52692 * 7 5 4 36 36 H 1.09000 * 113.61578 * 25.43424 * 7 5 4 37 37 H 0.97004 * 120.00105 * 287.50659 * 10 8 7 38 38 H 1.08002 * 119.99880 * 359.97438 * 14 13 11 39 39 H 1.08000 * 120.00154 * 180.31926 * 15 14 13 40 40 H 1.08000 * 122.64974 * 0.02562 * 18 17 16 41 41 H 1.07998 * 122.46646 * 180.18939 * 19 18 17 42 42 H 1.09007 * 109.46818 * 60.02827 * 21 20 19 43 43 H 0.96701 * 113.99662 * 299.99318 * 22 21 20 44 44 H 1.48505 * 109.99830 * 180.02562 * 23 21 20 45 45 H 1.48500 * 110.00071 * 301.31785 * 23 21 20 46 46 H 1.08004 * 120.00050 * 180.02562 * 25 16 15 47 47 H 1.08002 * 120.00364 * 180.02562 * 26 25 16 48 48 H 1.08998 * 113.61879 * 270.88747 * 27 8 7 49 49 H 1.08997 * 113.69304 * 139.98833 * 27 8 7 50 50 H 1.07996 * 119.96776 * 180.25104 * 28 4 3 51 51 H 1.07995 * 119.94424 * 179.97438 * 29 28 4 52 52 H 1.08003 * 119.97446 * 180.02562 * 30 29 28 53 53 H 1.07995 * 120.03096 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4311 1.2847 0.0005 5 6 4.2536 0.0222 0.0005 6 1 3.6594 -0.8714 -0.1910 7 6 5.5234 0.1141 -0.8621 8 6 6.2415 -0.6668 0.2512 9 1 7.2515 -0.3108 0.4545 10 7 6.1733 -2.1208 0.0859 11 6 7.2705 -2.8089 -0.2873 12 8 8.3171 -2.2228 -0.4863 13 6 7.2016 -4.2734 -0.4543 14 6 5.9995 -4.9481 -0.2199 15 6 5.9341 -6.3025 -0.3810 16 6 7.0726 -7.0164 -0.7678 17 6 7.0036 -8.4809 -0.9352 18 6 5.9029 -9.2370 -0.7385 19 6 6.0829 -10.5848 -0.9613 20 6 7.3194 -10.9387 -1.3280 21 6 7.7667 -12.3474 -1.6224 22 8 7.5785 -13.1593 -0.4617 23 14 9.5699 -12.3413 -2.0905 24 16 8.3448 -9.5126 -1.4149 25 6 8.2762 -6.3425 -0.9961 26 6 8.3399 -4.9871 -0.8419 27 6 5.1848 -0.1065 1.2177 28 6 4.0559 2.5171 -0.0053 29 6 3.3019 3.6758 -0.0058 30 6 1.9208 3.6047 -0.0011 31 6 1.2913 2.3753 0.0036 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 5.4528 -0.4320 -1.8027 36 1 5.8923 1.1319 -0.9891 37 1 5.3384 -2.5885 0.2449 38 1 5.1215 -4.3973 0.0837 39 1 5.0043 -6.8230 -0.2050 40 1 4.9552 -8.8182 -0.4338 41 1 5.2852 -11.3034 -0.8440 42 1 7.1786 -12.7504 -2.4471 43 1 8.0734 -12.8588 0.3128 44 1 10.0231 -13.7247 -2.3839 45 1 9.7837 -11.4749 -3.2774 46 1 9.1554 -6.8938 -1.2952 47 1 9.2695 -4.4666 -1.0187 48 1 5.4609 0.8510 1.6593 49 1 4.8398 -0.8297 1.9567 50 1 5.1343 2.5751 -0.0090 51 1 3.7921 4.6380 -0.0100 52 1 1.3339 4.5114 -0.0020 53 1 0.2128 2.3203 0.0069 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13308390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:52 Heat of formation + Delta-G solvation = 20.161841 kcal Electronic energy + Delta-G solvation = -35575.849408 eV Core-core repulsion = 30858.116953 eV Total energy + Delta-G solvation = -4717.732455 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.138 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.86655 -41.18477 -40.20488 -39.39195 -38.87179 -38.02390 -37.35582 -34.86061 -33.43069 -32.34049 -31.72579 -31.04358 -30.40266 -28.16407 -27.39123 -26.69044 -26.11486 -24.72545 -23.97959 -23.49822 -23.06204 -22.56734 -21.80708 -20.24963 -20.18191 -19.25657 -19.00806 -18.59728 -17.63432 -17.42130 -17.09841 -16.72657 -16.65125 -16.57887 -16.23926 -16.18871 -16.08710 -16.01759 -15.57587 -15.33565 -15.17341 -15.08057 -14.88312 -14.50406 -14.47024 -14.36172 -14.21220 -13.99304 -13.89429 -13.60794 -13.49355 -13.32582 -13.11664 -13.09460 -12.97687 -12.75068 -12.58938 -12.30412 -12.27276 -12.06711 -12.01492 -11.75976 -11.64723 -11.57231 -11.15723 -11.13801 -10.81328 -10.53574 -10.19151 -10.14837 -9.75548 -9.54931 -9.06772 -9.03117 -5.16037 -0.89282 0.25041 0.33865 0.35114 0.38454 0.49442 0.76444 1.22045 1.52148 1.58822 1.84955 1.95308 2.01013 2.38867 2.76566 2.82471 3.39178 3.44680 3.47255 3.65187 3.67639 3.68960 3.75035 3.75831 3.84487 3.92739 4.00541 4.10979 4.19433 4.20522 4.31221 4.33075 4.36984 4.37584 4.46280 4.46832 4.49357 4.55764 4.61538 4.64981 4.70987 4.74339 4.79444 4.84270 4.91874 4.95062 5.01476 5.01731 5.10722 5.10788 5.17040 5.22882 5.28874 5.32158 5.41330 5.46909 5.48260 5.59789 5.66348 5.73336 5.86195 6.43200 6.44860 6.66444 7.10447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.115 4.115 5 C -0.057 4.057 6 H 0.101 0.899 7 C -0.142 4.142 8 C 0.116 3.884 9 H 0.091 0.909 10 N -0.694 5.694 11 C 0.560 3.440 12 O -0.578 6.578 13 C -0.150 4.150 14 C -0.068 4.068 15 C -0.109 4.109 16 C 0.007 3.993 17 C -0.159 4.159 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.221 4.221 21 C -0.025 4.025 22 O -0.547 6.547 23 Si 0.717 3.283 24 S 0.123 5.877 25 C -0.128 4.128 26 C -0.063 4.063 27 C -0.123 4.123 28 C -0.087 4.087 29 C -0.163 4.163 30 C -0.094 4.094 31 C -0.217 4.217 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.414 0.586 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.397 0.603 44 H -0.269 1.269 45 H -0.268 1.268 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.143 0.857 51 H 0.139 0.861 52 H 0.139 0.861 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 0.299 3.242 6.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.116 4.116 5 C -0.076 4.076 6 H 0.119 0.881 7 C -0.180 4.180 8 C 0.011 3.989 9 H 0.109 0.891 10 N -0.346 5.346 11 C 0.349 3.651 12 O -0.459 6.459 13 C -0.154 4.154 14 C -0.087 4.087 15 C -0.128 4.128 16 C 0.005 3.995 17 C -0.276 4.276 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.339 4.339 21 C -0.138 4.138 22 O -0.355 6.355 23 Si 0.620 3.380 24 S 0.390 5.610 25 C -0.147 4.147 26 C -0.082 4.082 27 C -0.161 4.161 28 C -0.104 4.104 29 C -0.181 4.181 30 C -0.112 4.112 31 C -0.236 4.236 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.252 0.748 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.247 0.753 44 H -0.194 1.194 45 H -0.194 1.194 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.122 0.878 49 H 0.103 0.897 50 H 0.161 0.839 51 H 0.156 0.844 52 H 0.157 0.843 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.009 0.221 1.720 3.473 hybrid contribution -2.487 -0.145 -0.033 2.492 sum -5.496 0.076 1.687 5.750 Atomic orbital electron populations 1.23280 0.76934 1.05370 1.01884 1.86010 1.22839 1.26770 1.88700 1.19090 0.92273 0.84716 0.97172 1.19232 0.90281 0.95954 1.06127 1.21341 0.93649 0.95472 0.97092 0.88122 1.23576 0.95376 1.01479 0.97576 1.21867 1.00090 0.79538 0.97423 0.89125 1.45490 1.12868 1.07483 1.68762 1.18477 0.83334 0.87477 0.75829 1.90779 1.31231 1.71508 1.52389 1.20004 0.96190 0.92201 1.06979 1.21240 0.96662 0.94679 0.96118 1.21182 0.98522 0.93849 0.99256 1.18462 0.94382 0.89444 0.97233 1.23159 0.98083 0.96009 1.10387 1.20636 0.99601 0.92811 1.01637 1.20179 0.96980 0.96269 1.00578 1.25169 0.98189 0.99314 1.11203 1.24402 1.11393 0.85679 0.92331 1.86490 1.74021 1.52819 1.22133 0.94186 0.76530 0.81224 0.86039 1.84184 1.12860 0.97289 1.66635 1.21036 0.97780 0.94193 1.01645 1.20951 0.98247 0.93843 0.95115 1.23379 0.94105 1.02551 0.96081 1.21107 1.00853 0.90918 0.97571 1.21354 0.94153 0.99228 1.03395 1.21257 0.95178 0.97594 0.97132 1.21493 1.00900 0.92459 1.08753 0.92027 0.92248 0.86502 0.91763 0.88110 0.74777 0.82321 0.82241 0.81655 0.82861 0.86016 0.75321 1.19382 1.19409 0.84705 0.85183 0.87815 0.89743 0.83937 0.84350 0.84272 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.67 9.43 -92.33 -0.87 -1.54 16 3 C 0.11 0.37 6.66 22.51 0.15 0.52 16 4 C -0.12 -0.24 5.30 -19.77 -0.10 -0.34 16 5 C -0.06 0.04 3.75 -11.01 -0.04 0.00 16 6 H 0.10 -0.05 7.33 -2.39 -0.02 -0.07 16 7 C -0.14 -0.02 7.25 31.12 0.23 0.21 16 8 C 0.12 0.07 4.32 45.52 0.20 0.27 16 9 H 0.09 0.39 7.46 -2.38 -0.02 0.38 16 10 N -0.69 -0.09 5.21 -443.17 -2.31 -2.40 16 11 C 0.56 3.58 7.76 86.70 0.67 4.25 16 12 O -0.58 -8.60 15.93 -4.01 -0.06 -8.66 16 13 C -0.15 -0.46 5.88 -20.05 -0.12 -0.58 16 14 C -0.07 0.21 9.48 22.26 0.21 0.42 16 15 C -0.11 0.34 9.48 22.26 0.21 0.55 16 16 C 0.01 0.00 5.88 -20.05 -0.12 -0.11 16 17 C -0.16 -0.03 6.37 23.98 0.15 0.12 16 18 C -0.12 0.24 9.64 21.42 0.21 0.44 16 19 C -0.11 0.13 10.00 21.14 0.21 0.34 16 20 C -0.22 0.14 5.73 24.66 0.14 0.28 16 21 C -0.02 0.03 2.96 71.24 0.21 0.24 16 22 O -0.55 0.60 12.86 -148.98 -1.92 -1.32 16 23 Si 0.72 -0.93 30.96 68.60 2.12 1.19 16 24 S 0.12 -0.01 19.46 -56.49 -1.10 -1.11 16 25 C -0.13 -0.28 9.54 22.26 0.21 -0.07 16 26 C -0.06 -0.28 9.53 22.26 0.21 -0.07 16 27 C -0.12 0.32 7.29 31.12 0.23 0.54 16 28 C -0.09 -0.05 8.61 22.26 0.19 0.15 16 29 C -0.16 -0.06 10.04 22.28 0.22 0.17 16 30 C -0.09 -0.06 10.04 22.25 0.22 0.17 16 31 C -0.22 -0.34 9.04 22.37 0.20 -0.13 16 32 H 0.06 -0.34 7.65 -2.39 -0.02 -0.36 16 33 H 0.06 -0.30 7.67 -2.39 -0.02 -0.32 16 34 H 0.12 -0.93 8.14 -2.38 -0.02 -0.95 16 35 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.10 -0.11 6.31 -2.39 -0.02 -0.12 16 37 H 0.41 -2.32 6.71 -92.71 -0.62 -2.95 16 38 H 0.16 -1.53 6.38 -2.91 -0.02 -1.55 16 39 H 0.16 -1.38 6.74 -2.91 -0.02 -1.40 16 40 H 0.17 -1.15 6.88 -2.91 -0.02 -1.17 16 41 H 0.15 -0.46 8.06 -2.91 -0.02 -0.49 16 42 H 0.12 -0.13 7.96 -2.38 -0.02 -0.15 16 43 H 0.40 -3.42 8.70 -74.06 -0.64 -4.06 16 44 H -0.27 -1.22 7.11 99.48 0.71 -0.52 16 45 H -0.27 -0.98 7.11 99.48 0.71 -0.28 16 46 H 0.14 0.03 7.26 -2.91 -0.02 0.01 16 47 H 0.13 0.77 7.64 -2.91 -0.02 0.75 16 48 H 0.10 -0.34 7.72 -2.39 -0.02 -0.36 16 49 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 50 H 0.14 -0.42 6.66 -2.91 -0.02 -0.44 16 51 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 52 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 53 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16 Total: 0.00 -21.40 446.41 0.43 -20.96 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.24 Total: -15.52 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.81 Total: 8.40 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -2.31 Total: -2.40 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -2.85 Total: -11.52 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.12 Total: 1.19 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.10 Total: -1.11 kcal Total: -21.40 0.43 -20.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13308390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.126 kcal (2) G-P(sol) polarization free energy of solvation -21.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds