Wall clock time and date at job start Sun Mar 7 2021 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35905 * 117.00276 * 2 1 4 4 C 1.38706 * 120.05565 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.02899 * 0.02562 * 4 3 2 6 6 H 1.09001 * 112.85048 * 10.92158 * 5 4 3 7 7 C 1.54053 * 113.61912 * 142.22624 * 5 4 3 8 8 C 1.53785 * 86.98369 * 139.97865 * 7 5 4 9 9 H 1.09002 * 113.61390 * 219.97848 * 8 7 5 10 10 N 1.46504 * 113.61160 * 89.16514 * 8 7 5 11 11 C 1.34769 * 119.99932 * 105.86648 * 10 8 7 12 12 O 1.21584 * 120.00307 * 359.97438 * 11 10 8 13 13 C 1.47544 * 119.99964 * 179.97438 * 11 10 8 14 14 C 1.40132 * 120.19073 * 179.97438 * 13 11 10 15 15 O 1.35650 * 120.15463 * 0.03362 * 14 13 11 16 16 C 1.38714 * 119.69622 * 179.75379 * 14 13 11 17 17 C 1.38056 * 120.08510 * 0.53332 * 16 14 13 18 18 C 1.50699 * 119.80628 * 179.73088 * 17 16 14 19 19 O 1.42901 * 109.46830 * 299.73140 * 18 17 16 20 20 Si 1.86298 * 109.46950 * 179.73577 * 18 17 16 21 21 C 1.38552 * 120.38730 * 359.46613 * 17 16 14 22 22 C 1.37791 * 120.30338 * 0.26126 * 21 17 16 23 23 C 1.53779 * 113.61437 * 239.72267 * 5 4 3 24 24 C 1.38164 * 119.94453 * 179.72670 * 4 3 2 25 25 C 1.38239 * 120.05456 * 0.23582 * 24 4 3 26 26 C 1.38289 * 120.11218 * 0.02562 * 25 24 4 27 27 C 1.38123 * 120.05434 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47606 * 59.99456 * 1 2 3 29 29 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47254 * 299.99448 * 1 2 3 31 31 H 1.08997 * 113.61118 * 25.47661 * 7 5 4 32 32 H 1.08997 * 113.69769 * 254.49334 * 7 5 4 33 33 H 0.96995 * 119.99372 * 285.85350 * 10 8 7 34 34 H 0.96704 * 113.99725 * 90.00018 * 15 14 13 35 35 H 1.07999 * 119.95561 * 180.29457 * 16 14 13 36 36 H 1.08991 * 109.47351 * 59.73287 * 18 17 16 37 37 H 0.96708 * 114.00246 * 299.99864 * 19 18 17 38 38 H 1.48506 * 109.99834 * 180.02562 * 20 18 17 39 39 H 1.48502 * 110.00011 * 301.31529 * 20 18 17 40 40 H 1.07997 * 119.84999 * 180.29491 * 21 17 16 41 41 H 1.07991 * 120.04753 * 180.02562 * 22 21 17 42 42 H 1.08996 * 113.61807 * 105.47067 * 23 5 4 43 43 H 1.09007 * 113.61724 * 334.56538 * 23 5 4 44 44 H 1.07997 * 119.97456 * 180.25533 * 24 4 3 45 45 H 1.08006 * 119.94920 * 180.02562 * 25 24 4 46 46 H 1.08003 * 119.97013 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.02579 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0220 -0.0017 6 1 3.6582 -0.8708 -0.1923 7 6 5.5250 0.1144 -0.8668 8 6 6.2417 -0.6671 0.2471 9 1 7.2519 -0.3113 0.4496 10 7 6.1733 -2.1211 0.0811 11 6 7.2619 -2.8051 -0.3230 12 8 8.3007 -2.2155 -0.5502 13 6 7.1932 -4.2695 -0.4896 14 6 8.3226 -4.9847 -0.9100 15 8 9.4851 -4.3339 -1.1653 16 6 8.2480 -6.3618 -1.0584 17 6 7.0627 -7.0221 -0.8033 18 6 6.9870 -8.5177 -0.9723 19 8 7.2854 -8.8595 -2.3274 20 14 5.2707 -9.1046 -0.5473 21 6 5.9439 -6.3186 -0.3875 22 6 6.0016 -4.9510 -0.2295 23 6 5.1857 -0.1071 1.2146 24 6 4.0560 2.5170 -0.0062 25 6 3.3020 3.6757 -0.0065 26 6 1.9210 3.6047 -0.0005 27 6 1.2915 2.3753 0.0063 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 5.8942 1.1322 -0.9930 32 1 5.4553 -0.4314 -1.8077 33 1 5.3445 -2.5914 0.2622 34 1 10.0673 -4.2530 -0.3974 35 1 9.1171 -6.9177 -1.3776 36 1 7.7087 -8.9953 -0.3098 37 1 6.6817 -8.4684 -2.9738 38 1 5.1831 -10.5781 -0.7095 39 1 4.9361 -8.7270 0.8494 40 1 5.0224 -6.8445 -0.1857 41 1 5.1272 -4.4067 0.0952 42 1 4.8422 -0.8316 1.9530 43 1 5.4623 0.8502 1.6565 44 1 5.1344 2.5751 -0.0108 45 1 3.7923 4.6380 -0.0114 46 1 1.3341 4.5114 -0.0011 47 1 0.2129 2.3204 0.0114 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13422076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:07:57 Heat of formation + Delta-G solvation = -56.628825 kcal Electronic energy + Delta-G solvation = -30820.265306 eV Core-core repulsion = 26515.348320 eV Total energy + Delta-G solvation = -4304.916987 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.92233 -41.35491 -40.34532 -39.19188 -38.40951 -37.96233 -37.14111 -34.71737 -32.81461 -31.59692 -31.11370 -31.03373 -28.16191 -27.62469 -26.68359 -26.03777 -23.88813 -23.79993 -23.02619 -22.53692 -21.73320 -20.19657 -19.39517 -19.09383 -18.68583 -18.19847 -17.41470 -17.21681 -16.86141 -16.63210 -16.50511 -16.25428 -16.19564 -16.14513 -15.78458 -15.33953 -15.26967 -15.13033 -14.99996 -14.72689 -14.41944 -14.23197 -13.97755 -13.82040 -13.47237 -13.31547 -13.11223 -12.96990 -12.85442 -12.73481 -12.30222 -12.27812 -12.17393 -11.99819 -11.75654 -11.67845 -11.61258 -11.14547 -10.96078 -10.52240 -10.21221 -10.00892 -9.78061 -9.73356 -9.05612 -4.97140 -0.42041 0.14412 0.35864 0.50288 1.29317 1.63915 1.71480 1.99414 2.01414 2.40335 2.56232 2.77514 3.12601 3.43009 3.47389 3.54570 3.66646 3.69332 3.73199 3.80059 3.93646 4.01466 4.07482 4.12212 4.20773 4.27092 4.34784 4.39719 4.39781 4.47460 4.50476 4.57930 4.65772 4.72056 4.75776 4.76289 4.80264 4.84707 4.96286 5.02179 5.02908 5.11514 5.13330 5.19568 5.23849 5.42134 5.48424 5.59357 5.60874 5.67864 5.86945 6.46086 6.46397 6.70473 6.73204 7.15601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.056 4.056 6 H 0.102 0.898 7 C -0.143 4.143 8 C 0.118 3.882 9 H 0.088 0.912 10 N -0.696 5.696 11 C 0.558 3.442 12 O -0.562 6.562 13 C -0.179 4.179 14 C 0.153 3.847 15 O -0.498 6.498 16 C -0.140 4.140 17 C -0.072 4.072 18 C -0.085 4.085 19 O -0.556 6.556 20 Si 0.788 3.212 21 C -0.131 4.131 22 C -0.053 4.053 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.164 4.164 26 C -0.094 4.094 27 C -0.217 4.217 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.413 0.587 34 H 0.407 0.593 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.397 0.603 38 H -0.303 1.303 39 H -0.273 1.273 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 0.265 2.316 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.074 4.074 6 H 0.121 0.879 7 C -0.181 4.181 8 C 0.013 3.987 9 H 0.106 0.894 10 N -0.348 5.348 11 C 0.346 3.654 12 O -0.442 6.442 13 C -0.183 4.183 14 C 0.107 3.893 15 O -0.311 6.311 16 C -0.158 4.158 17 C -0.073 4.073 18 C -0.194 4.194 19 O -0.364 6.364 20 Si 0.693 3.307 21 C -0.149 4.149 22 C -0.072 4.072 23 C -0.160 4.160 24 C -0.105 4.105 25 C -0.182 4.182 26 C -0.112 4.112 27 C -0.236 4.236 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.266 0.734 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.247 0.753 38 H -0.232 1.232 39 H -0.200 1.200 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.805 -0.268 2.405 8.171 hybrid contribution 0.553 0.163 0.518 0.775 sum -7.252 -0.105 2.923 7.819 Atomic orbital electron populations 1.23282 0.76919 1.05419 1.01851 1.86012 1.22837 1.26675 1.88675 1.19078 0.92231 0.84752 0.97100 1.19240 0.90334 0.95963 1.06137 1.21381 0.93562 0.95474 0.96960 0.87948 1.23621 0.95519 1.01380 0.97600 1.21829 0.99941 0.79594 0.97339 0.89375 1.45474 1.13752 1.07406 1.68196 1.18318 0.83500 0.87124 0.76414 1.90805 1.31286 1.70960 1.51117 1.20430 0.96694 0.92994 1.08202 1.18751 0.86502 0.89889 0.94186 1.84720 1.28861 1.77843 1.39650 1.21334 0.99732 0.92451 1.02323 1.20581 0.93171 0.96784 0.96767 1.25437 1.14136 0.92221 0.87626 1.86496 1.59887 1.74864 1.15151 0.93579 0.77162 0.77859 0.82142 1.21234 0.98491 0.94153 1.00975 1.21487 0.96192 0.94492 0.94997 1.23367 0.94095 1.02504 0.96079 1.21096 1.00805 0.90974 0.97610 1.21352 0.94190 0.99205 1.03469 1.21256 0.95144 0.97634 0.97138 1.21492 1.00920 0.92437 1.08717 0.92258 0.86402 0.92092 0.88313 0.91886 0.74836 0.73354 0.84812 0.87161 0.75321 1.23150 1.19980 0.81964 0.81627 0.89620 0.87920 0.84057 0.84425 0.84285 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.46 9.43 -92.48 -0.87 -1.33 16 3 C 0.11 0.33 6.66 22.50 0.15 0.48 16 4 C -0.12 -0.21 5.30 -19.77 -0.10 -0.32 16 5 C -0.06 0.06 3.76 -10.92 -0.04 0.02 16 6 H 0.10 -0.11 7.32 -2.39 -0.02 -0.13 16 7 C -0.14 -0.04 7.27 31.21 0.23 0.18 16 8 C 0.12 0.05 4.30 45.52 0.20 0.24 16 9 H 0.09 0.38 7.50 -2.39 -0.02 0.36 16 10 N -0.70 0.20 5.21 -443.19 -2.31 -2.11 16 11 C 0.56 3.55 7.76 86.70 0.67 4.22 16 12 O -0.56 -8.35 14.78 16.94 0.25 -8.10 16 13 C -0.18 -0.52 5.89 -20.01 -0.12 -0.64 16 14 C 0.15 0.84 6.72 22.84 0.15 1.00 16 15 O -0.50 -4.25 11.58 -68.73 -0.80 -5.04 16 16 C -0.14 -0.35 9.53 22.34 0.21 -0.13 16 17 C -0.07 0.13 5.39 -19.83 -0.11 0.03 16 18 C -0.09 0.23 2.81 71.24 0.20 0.43 16 19 O -0.56 0.42 12.77 -148.98 -1.90 -1.48 16 20 Si 0.79 -4.41 29.77 68.60 2.04 -2.37 16 21 C -0.13 0.72 8.64 22.24 0.19 0.91 16 22 C -0.05 0.24 9.54 22.52 0.21 0.45 16 23 C -0.12 0.36 7.29 31.12 0.23 0.59 16 24 C -0.09 -0.05 8.61 22.25 0.19 0.14 16 25 C -0.16 -0.06 10.04 22.28 0.22 0.16 16 26 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 27 C -0.22 -0.27 9.04 22.36 0.20 -0.07 16 28 H 0.06 -0.34 7.68 -2.39 -0.02 -0.36 16 29 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.06 -0.37 7.65 -2.38 -0.02 -0.39 16 31 H 0.10 -0.06 6.32 -2.39 -0.02 -0.08 16 32 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.41 -2.65 6.73 -92.71 -0.62 -3.27 16 34 H 0.41 0.63 9.06 -74.05 -0.67 -0.04 16 35 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.11 -0.17 7.96 -2.39 -0.02 -0.19 16 37 H 0.40 -3.48 8.70 -74.05 -0.64 -4.13 16 38 H -0.30 -0.89 7.11 99.48 0.71 -0.19 16 39 H -0.27 0.67 7.11 99.48 0.71 1.38 16 40 H 0.16 -1.81 4.85 -2.91 -0.01 -1.82 16 41 H 0.17 -1.91 6.40 -2.92 -0.02 -1.92 16 42 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.10 -0.36 7.72 -2.38 -0.02 -0.38 16 44 H 0.14 -0.39 6.66 -2.91 -0.02 -0.41 16 45 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 46 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 47 H 0.14 -0.34 6.30 -2.91 -0.02 -0.36 16 Total: 0.00 -24.92 385.61 -0.41 -25.33 By element: Atomic # 1 Polarization: -12.94 SS G_CDS: -0.85 Total: -13.79 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.03 Total: 8.88 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -2.31 Total: -2.11 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -3.32 Total: -15.95 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.04 Total: -2.37 kcal Total: -24.92 -0.41 -25.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13422076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.301 kcal (2) G-P(sol) polarization free energy of solvation -24.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds