Wall clock time and date at job start Sun Mar 7 2021 05:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00378 * 2 1 4 4 C 1.38706 * 120.05954 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.02568 * 359.95744 * 4 3 2 6 6 H 1.08996 * 112.85169 * 348.79878 * 5 4 3 7 7 C 1.53781 * 113.61417 * 119.99880 * 5 4 3 8 8 C 1.53786 * 87.17350 * 139.93966 * 7 5 4 9 9 H 1.09000 * 113.61138 * 220.06261 * 8 7 5 10 10 N 1.46496 * 113.61518 * 89.15486 * 8 7 5 11 11 C 1.34779 * 119.99390 * 154.99856 * 10 8 7 12 12 O 1.21577 * 120.00628 * 0.02562 * 11 10 8 13 13 C 1.47536 * 119.99231 * 180.02562 * 11 10 8 14 14 C 1.40148 * 120.18789 * 180.02562 * 13 11 10 15 15 O 1.35652 * 120.15106 * 359.95414 * 14 13 11 16 16 C 1.38706 * 119.70051 * 179.97438 * 14 13 11 17 17 C 1.50693 * 119.95765 * 180.02562 * 16 14 13 18 18 O 1.42902 * 109.47132 * 284.99495 * 17 16 14 19 19 Si 1.86302 * 109.47130 * 164.99777 * 17 16 14 20 20 C 1.38058 * 120.08508 * 0.02562 * 16 14 13 21 21 C 1.38552 * 120.38904 * 359.95645 * 20 16 14 22 22 C 1.50699 * 119.85142 * 180.02562 * 21 20 16 23 23 C 1.37794 * 120.29888 * 359.78585 * 21 20 16 24 24 C 1.53782 * 113.61283 * 217.49695 * 5 4 3 25 25 C 1.38164 * 119.94595 * 180.23357 * 4 3 2 26 26 C 1.38248 * 120.05656 * 359.51289 * 25 4 3 27 27 C 1.38288 * 120.10514 * 0.46578 * 26 25 4 28 28 C 1.38126 * 120.06226 * 359.79267 * 27 26 25 29 29 H 1.09000 * 109.47009 * 59.99425 * 1 2 3 30 30 H 1.08992 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46891 * 300.00358 * 1 2 3 32 32 H 1.09002 * 113.61445 * 254.52965 * 7 5 4 33 33 H 1.09002 * 113.61408 * 25.34696 * 7 5 4 34 34 H 0.97001 * 120.00117 * 335.00621 * 10 8 7 35 35 H 0.96694 * 114.00116 * 89.99706 * 15 14 13 36 36 H 1.09000 * 109.47741 * 44.99849 * 17 16 14 37 37 H 0.96703 * 114.00067 * 300.00351 * 18 17 16 38 38 H 1.48507 * 110.00016 * 58.67965 * 19 17 16 39 39 H 1.48498 * 110.00143 * 179.97438 * 19 17 16 40 40 H 1.07995 * 119.80798 * 179.97438 * 20 16 14 41 41 H 1.08994 * 109.47090 * 90.00265 * 22 21 20 42 42 H 1.09001 * 109.47212 * 210.00346 * 22 21 20 43 43 H 1.09005 * 109.46806 * 329.99633 * 22 21 20 44 44 H 1.08000 * 120.04621 * 180.25013 * 23 21 20 45 45 H 1.08997 * 113.61668 * 334.56418 * 24 5 4 46 46 H 1.08994 * 113.61387 * 105.47152 * 24 5 4 47 47 H 1.08001 * 119.97593 * 179.75036 * 25 4 3 48 48 H 1.07996 * 119.94571 * 180.21291 * 26 25 4 49 49 H 1.08005 * 119.97004 * 179.76334 * 27 26 25 50 50 H 1.08000 * 120.02987 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0221 0.0021 6 1 3.6591 -0.8702 0.1978 7 6 5.1808 -0.1107 -1.2177 8 6 6.2427 -0.6671 -0.2544 9 1 7.2510 -0.3092 -0.4623 10 7 6.1770 -2.1207 -0.0847 11 6 7.2768 -2.8062 0.2854 12 8 8.3233 -2.2183 0.4787 13 6 7.2108 -4.2702 0.4557 14 6 8.3518 -4.9870 0.8409 15 8 9.5231 -4.3381 1.0581 16 6 8.2782 -6.3631 0.9986 17 6 9.5014 -7.1395 1.4132 18 8 10.3944 -7.2499 0.3030 19 14 8.9953 -8.8423 1.9746 20 6 7.0857 -7.0224 0.7763 21 6 5.9554 -6.3173 0.3958 22 6 4.6599 -7.0491 0.1569 23 6 6.0092 -4.9493 0.2396 24 6 5.5263 0.1169 0.8603 25 6 4.0560 2.5170 0.0054 26 6 3.3020 3.6758 -0.0004 27 6 1.9210 3.6047 -0.0014 28 6 1.2914 2.3753 -0.0009 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.8342 -0.8374 -1.9524 33 1 5.4543 0.8452 -1.6643 34 1 5.3420 -2.5898 -0.2387 35 1 9.6447 -4.0406 1.9701 36 1 10.0011 -6.6209 2.2313 37 1 10.0154 -7.7021 -0.4632 38 1 8.2847 -9.5484 0.8783 39 1 10.1928 -9.6184 2.3856 40 1 7.0336 -8.0939 0.9001 41 1 4.0939 -7.0989 1.0870 42 1 4.0763 -6.5186 -0.5955 43 1 4.8725 -8.0590 -0.1938 44 1 5.1247 -4.4032 -0.0532 45 1 5.8955 1.1351 0.9826 46 1 5.4586 -0.4260 1.8029 47 1 5.1344 2.5752 0.0099 48 1 3.7924 4.6380 -0.0001 49 1 1.3340 4.5114 -0.0021 50 1 0.2128 2.3204 -0.0013 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13422088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:01 Heat of formation + Delta-G solvation = -60.148748 kcal Electronic energy + Delta-G solvation = -33199.636615 eV Core-core repulsion = 28739.029374 eV Total energy + Delta-G solvation = -4460.607241 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.97580 -41.43360 -40.43586 -39.20312 -38.10962 -37.97935 -37.73233 -34.76894 -33.07602 -32.84097 -31.58381 -31.04540 -28.15253 -27.54267 -26.82867 -26.70022 -26.45816 -24.95113 -23.12080 -22.61932 -21.99358 -21.62355 -20.18644 -19.61338 -19.10328 -18.47644 -17.97709 -17.49091 -17.29359 -16.82328 -16.77841 -16.64585 -16.53080 -16.06063 -15.96288 -15.76651 -15.36611 -15.34768 -15.08138 -14.91307 -14.72422 -14.43841 -14.30887 -14.19601 -13.98468 -13.58750 -13.49326 -13.34596 -13.15262 -12.98677 -12.90643 -12.74805 -12.53807 -12.29135 -12.25659 -12.01126 -11.85774 -11.74754 -11.71751 -11.63958 -11.17101 -11.03741 -10.53955 -10.27131 -10.02374 -9.75891 -9.50141 -9.06909 -4.94999 -0.35716 0.07405 0.34692 0.49133 1.25038 1.55007 1.69458 1.92530 2.01794 2.38935 2.54925 2.76326 3.16577 3.33919 3.46244 3.50988 3.59109 3.66369 3.71458 3.77616 3.92260 3.99584 4.09769 4.11664 4.17639 4.20001 4.33201 4.37046 4.38277 4.46209 4.49075 4.50208 4.62278 4.64484 4.70742 4.74496 4.78153 4.80261 4.83585 4.90693 4.94579 4.97655 4.99888 5.10257 5.15266 5.19284 5.24394 5.40945 5.41798 5.46852 5.59476 5.65941 5.68038 5.85807 6.43680 6.44910 6.46503 6.74006 7.13609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.054 4.054 6 H 0.101 0.899 7 C -0.125 4.125 8 C 0.117 3.883 9 H 0.087 0.913 10 N -0.696 5.696 11 C 0.558 3.442 12 O -0.562 6.562 13 C -0.180 4.180 14 C 0.166 3.834 15 O -0.491 6.491 16 C -0.153 4.153 17 C -0.085 4.085 18 O -0.547 6.547 19 Si 0.784 3.216 20 C -0.079 4.079 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.061 4.061 24 C -0.139 4.139 25 C -0.087 4.087 26 C -0.164 4.164 27 C -0.093 4.093 28 C -0.217 4.217 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.412 0.588 35 H 0.402 0.598 36 H 0.114 0.886 37 H 0.383 0.617 38 H -0.267 1.267 39 H -0.305 1.305 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.156 0.844 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -1.902 1.498 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.069 3.931 4 C -0.117 4.117 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.163 4.163 8 C 0.011 3.989 9 H 0.105 0.895 10 N -0.349 5.349 11 C 0.347 3.653 12 O -0.441 6.441 13 C -0.184 4.184 14 C 0.119 3.881 15 O -0.304 6.304 16 C -0.154 4.154 17 C -0.192 4.192 18 O -0.355 6.355 19 Si 0.688 3.312 20 C -0.097 4.097 21 C -0.094 4.094 22 C -0.174 4.174 23 C -0.080 4.080 24 C -0.178 4.178 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.111 4.111 28 C -0.235 4.235 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.262 0.738 36 H 0.132 0.868 37 H 0.232 0.768 38 H -0.193 1.193 39 H -0.233 1.233 40 H 0.172 0.828 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.174 0.826 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.077 -2.287 1.311 9.452 hybrid contribution -0.002 0.561 -0.736 0.926 sum -9.080 -1.725 0.575 9.260 Atomic orbital electron populations 1.23281 0.76910 1.05394 1.01884 1.86012 1.22853 1.26715 1.88682 1.19076 0.92214 0.84750 0.97104 1.19229 0.90339 0.95916 1.06205 1.21308 0.93595 0.95489 0.96884 0.88041 1.23386 0.94288 1.02446 0.96188 1.21869 0.99851 0.79607 0.97524 0.89523 1.45475 1.12609 1.07430 1.69359 1.18330 0.83464 0.87115 0.76440 1.90803 1.30800 1.71048 1.51471 1.20395 0.95446 0.92823 1.09708 1.18535 0.84284 0.89910 0.95378 1.84759 1.34642 1.75980 1.34981 1.20646 0.96902 0.93243 1.04627 1.25314 0.90621 1.11125 0.92147 1.86640 1.41708 1.80698 1.26437 0.94072 0.80654 0.71257 0.85214 1.21406 0.91050 1.01153 0.96057 1.20105 0.96957 0.93259 0.99041 1.20918 0.92414 1.00359 1.03669 1.21406 0.95938 0.94477 0.96146 1.23587 0.95232 1.01367 0.97575 1.21099 1.00805 0.90974 0.97608 1.21353 0.94193 0.99191 1.03441 1.21260 0.95133 0.97635 0.97084 1.21496 1.00921 0.92422 1.08710 0.92098 0.86454 0.92185 0.89962 0.87966 0.74991 0.73841 0.86780 0.76799 1.19313 1.23304 0.82829 0.89153 0.90092 0.90458 0.82624 0.88212 0.91539 0.84072 0.84391 0.84236 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.58 9.43 -92.45 -0.87 -1.45 16 3 C 0.11 0.36 6.66 22.51 0.15 0.51 16 4 C -0.12 -0.26 5.30 -19.77 -0.10 -0.36 16 5 C -0.05 0.02 3.76 -11.01 -0.04 -0.02 16 6 H 0.10 -0.04 7.33 -2.39 -0.02 -0.06 16 7 C -0.13 0.20 7.29 31.12 0.23 0.42 16 8 C 0.12 0.19 4.33 45.58 0.20 0.39 16 9 H 0.09 0.53 7.47 -2.39 -0.02 0.51 16 10 N -0.70 -0.89 5.22 -442.92 -2.31 -3.20 16 11 C 0.56 4.43 7.76 86.70 0.67 5.10 16 12 O -0.56 -9.18 14.76 16.96 0.25 -8.93 16 13 C -0.18 -0.81 5.89 -20.01 -0.12 -0.93 16 14 C 0.17 1.09 6.69 22.85 0.15 1.24 16 15 O -0.49 -5.09 10.91 -68.75 -0.75 -5.84 16 16 C -0.15 -0.28 5.27 -19.80 -0.10 -0.38 16 17 C -0.08 -0.14 2.38 71.23 0.17 0.03 16 18 O -0.55 -3.70 12.88 -148.98 -1.92 -5.62 16 19 Si 0.78 -2.15 30.24 68.60 2.07 -0.08 16 20 C -0.08 0.21 8.30 22.30 0.19 0.40 16 21 C -0.09 0.38 5.87 -19.89 -0.12 0.27 16 22 C -0.12 1.09 10.00 71.24 0.71 1.80 16 23 C -0.06 0.15 9.18 22.52 0.21 0.36 16 24 C -0.14 -0.05 7.26 31.18 0.23 0.17 16 25 C -0.09 -0.07 8.62 22.25 0.19 0.12 16 26 C -0.16 -0.09 10.04 22.28 0.22 0.14 16 27 C -0.09 -0.05 10.04 22.26 0.22 0.17 16 28 C -0.22 -0.31 9.04 22.37 0.20 -0.10 16 29 H 0.06 -0.35 7.66 -2.39 -0.02 -0.37 16 30 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.06 -0.34 7.66 -2.39 -0.02 -0.35 16 32 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.10 -0.22 7.73 -2.39 -0.02 -0.24 16 34 H 0.41 -1.84 6.73 -92.71 -0.62 -2.46 16 35 H 0.40 1.39 9.06 -74.06 -0.67 0.72 16 36 H 0.11 0.13 7.83 -2.39 -0.02 0.11 16 37 H 0.38 0.15 8.70 -74.06 -0.64 -0.49 16 38 H -0.27 0.38 6.68 99.48 0.66 1.04 16 39 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 40 H 0.15 -1.02 4.83 -2.91 -0.01 -1.04 16 41 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.08 -0.86 8.08 -2.39 -0.02 -0.88 16 43 H 0.08 -0.76 8.08 -2.38 -0.02 -0.78 16 44 H 0.16 -1.31 6.40 -2.91 -0.02 -1.33 16 45 H 0.10 -0.07 6.30 -2.39 -0.02 -0.08 16 46 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.14 -0.34 6.64 -2.91 -0.02 -0.36 16 48 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 49 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 50 H 0.14 -0.32 6.30 -2.91 -0.02 -0.34 16 Total: 0.00 -25.19 406.21 -0.08 -25.27 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -0.93 Total: -10.50 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.37 Total: 10.34 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -2.31 Total: -3.20 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -3.29 Total: -21.84 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.07 Total: -0.08 kcal Total: -25.19 -0.08 -25.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13422088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.875 kcal (2) G-P(sol) polarization free energy of solvation -25.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds