Wall clock time and date at job start Sun Mar 7 2021 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38701 * 120.05928 * 179.72471 * 3 2 1 5 5 C 1.50699 * 120.02999 * 0.02593 * 4 3 2 6 6 H 1.09003 * 112.84742 * 9.66846 * 5 4 3 7 7 C 1.53778 * 113.61798 * 140.86379 * 5 4 3 8 8 C 1.53953 * 87.02033 * 139.95542 * 7 5 4 9 9 H 1.09008 * 113.74130 * 220.05608 * 8 7 5 10 10 N 1.46496 * 113.53880 * 89.19175 * 8 7 5 11 11 C 1.34781 * 120.00511 * 107.50454 * 10 8 7 12 12 O 1.21657 * 119.99583 * 359.97438 * 11 10 8 13 13 C 1.47040 * 120.00264 * 179.97438 * 11 10 8 14 14 C 1.36227 * 123.49048 * 179.70379 * 13 11 10 15 15 Cl 1.73595 * 124.60516 * 0.03319 * 14 13 11 16 16 S 1.70449 * 110.78891 * 179.91615 * 14 13 11 17 17 C 1.75503 * 92.46539 * 0.29783 * 16 14 13 18 18 C 1.50692 * 124.68526 * 179.83158 * 17 16 14 19 19 O 1.42900 * 109.47133 * 245.00171 * 18 17 16 20 20 Si 1.86296 * 109.47217 * 4.99919 * 18 17 16 21 21 C 1.32694 * 110.62734 * 359.83047 * 17 16 14 22 22 C 1.53773 * 87.11117 * 334.63499 * 8 7 5 23 23 C 1.38165 * 119.94766 * 179.79478 * 4 3 2 24 24 C 1.38247 * 120.05172 * 0.48082 * 23 4 3 25 25 C 1.38289 * 120.11155 * 359.74987 * 24 23 4 26 26 C 1.38119 * 120.05481 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 28 28 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 30 30 H 1.09010 * 113.61173 * 254.53394 * 7 5 4 31 31 H 1.08999 * 113.61490 * 25.43501 * 7 5 4 32 32 H 0.97003 * 119.99972 * 287.50535 * 10 8 7 33 33 H 1.09005 * 109.47150 * 125.00197 * 18 17 16 34 34 H 0.96695 * 114.00171 * 60.00093 * 19 18 17 35 35 H 1.48508 * 110.00068 * 180.02562 * 20 18 17 36 36 H 1.48496 * 110.00072 * 301.32019 * 20 18 17 37 37 H 1.08001 * 123.44963 * 179.97438 * 21 17 16 38 38 H 1.08996 * 113.61750 * 270.81465 * 22 8 7 39 39 H 1.09010 * 113.68835 * 139.92107 * 22 8 7 40 40 H 1.07998 * 119.97726 * 180.25586 * 23 4 3 41 41 H 1.08001 * 119.94690 * 179.76584 * 24 23 4 42 42 H 1.08000 * 119.96757 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.02464 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2849 0.0058 5 6 4.2537 0.0222 0.0115 6 1 3.6558 -0.8732 -0.1582 7 6 5.5094 0.1011 -0.8726 8 6 6.2449 -0.6635 0.2430 9 1 7.2578 -0.3049 0.4267 10 7 6.1744 -2.1196 0.0988 11 6 7.2662 -2.8130 -0.2806 12 8 8.3101 -2.2294 -0.5037 13 6 7.1955 -4.2746 -0.4247 14 6 8.2521 -5.0440 -0.8090 15 17 9.8324 -4.4317 -1.1849 16 16 7.8124 -6.6897 -0.8673 17 6 6.1642 -6.3452 -0.3724 18 6 5.0881 -7.3844 -0.1916 19 8 4.0553 -7.1736 -1.1565 20 14 5.8188 -9.0821 -0.4252 21 6 5.9966 -5.0431 -0.1795 22 6 5.2022 -0.0896 1.2167 23 6 4.0559 2.5171 0.0015 24 6 3.3018 3.6758 0.0015 25 6 1.9208 3.6047 0.0005 26 6 1.2913 2.3753 0.0002 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 5.4237 -0.4590 -1.8039 31 1 5.8761 1.1169 -1.0207 32 1 5.3420 -2.5849 0.2763 33 1 4.6699 -7.3037 0.8118 34 1 4.3562 -7.2310 -2.0736 35 1 4.7673 -10.1162 -0.2500 36 1 6.4204 -9.1944 -1.7782 37 1 5.0599 -4.6027 0.1289 38 1 5.4847 0.8738 1.6409 39 1 4.8681 -0.8025 1.9707 40 1 5.1343 2.5752 0.0018 41 1 3.7921 4.6381 0.0019 42 1 1.3339 4.5114 0.0010 43 1 0.2127 2.3204 -0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13431040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:15 Heat of formation + Delta-G solvation = -11.723262 kcal Electronic energy + Delta-G solvation = -29295.746124 eV Core-core repulsion = 25040.811035 eV Total energy + Delta-G solvation = -4254.935089 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.79686 -40.99354 -39.68017 -38.82478 -38.10877 -37.89889 -37.02860 -34.57764 -31.97562 -31.54956 -31.04857 -28.18301 -27.09136 -26.69185 -26.64756 -25.25139 -23.12151 -22.56477 -22.28691 -20.87562 -20.12468 -19.46671 -19.04655 -18.02800 -17.80002 -17.37797 -16.96339 -16.66970 -16.61588 -16.49899 -16.05696 -15.90281 -15.77368 -15.35826 -15.15080 -14.99201 -14.68880 -14.49938 -14.38897 -14.23712 -13.98829 -13.93451 -13.45717 -13.13070 -13.01509 -12.94258 -12.75147 -12.61286 -12.48781 -12.28956 -12.13242 -12.02189 -11.80877 -11.74413 -11.64134 -11.15729 -11.00184 -10.72997 -10.18797 -9.89823 -9.76535 -9.65944 -9.07285 -5.03642 -0.64181 -0.19649 0.34597 0.47080 0.48814 0.70887 1.03908 1.18705 1.53156 1.90197 2.10610 2.14938 2.38158 2.76253 3.24126 3.47585 3.47923 3.67544 3.70450 3.82639 3.88076 3.92919 4.00876 4.10716 4.19520 4.32117 4.36325 4.37047 4.46081 4.48938 4.53155 4.65363 4.70654 4.73463 4.77346 4.79188 4.86258 4.94042 4.97194 5.01398 5.10424 5.17856 5.40917 5.47489 5.59410 5.66606 5.85762 6.41284 6.43470 6.44309 7.12227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.098 0.902 7 C -0.141 4.141 8 C 0.120 3.880 9 H 0.092 0.908 10 N -0.693 5.693 11 C 0.573 3.427 12 O -0.557 6.557 13 C -0.167 4.167 14 C -0.138 4.138 15 Cl 0.004 6.996 16 S 0.265 5.735 17 C -0.224 4.224 18 C -0.030 4.030 19 O -0.535 6.535 20 Si 0.704 3.296 21 C -0.068 4.068 22 C -0.123 4.123 23 C -0.086 4.086 24 C -0.163 4.163 25 C -0.094 4.094 26 C -0.217 4.217 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.150 0.850 34 H 0.389 0.611 35 H -0.269 1.269 36 H -0.257 1.257 37 H 0.178 0.822 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 -2.041 2.614 5.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.075 4.075 6 H 0.116 0.884 7 C -0.179 4.179 8 C 0.014 3.986 9 H 0.110 0.890 10 N -0.344 5.344 11 C 0.359 3.641 12 O -0.437 6.437 13 C -0.186 4.186 14 C -0.285 4.285 15 Cl 0.033 6.967 16 S 0.531 5.469 17 C -0.342 4.342 18 C -0.142 4.142 19 O -0.344 6.344 20 Si 0.606 3.394 21 C -0.097 4.097 22 C -0.161 4.161 23 C -0.104 4.104 24 C -0.181 4.181 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.239 0.761 35 H -0.194 1.194 36 H -0.183 1.183 37 H 0.195 0.805 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.444 -3.764 2.128 5.528 hybrid contribution -1.566 2.010 -0.796 2.669 sum -5.010 -1.754 1.332 5.472 Atomic orbital electron populations 1.23272 0.76961 1.05302 1.01908 1.86016 1.22825 1.26822 1.88714 1.19101 0.92300 0.84711 0.97208 1.19247 0.90294 0.95998 1.06122 1.21326 0.93676 0.95388 0.97129 0.88361 1.23595 0.95395 1.01502 0.97440 1.21872 1.00082 0.79339 0.97258 0.88968 1.45410 1.13124 1.07207 1.68704 1.17680 0.83662 0.86129 0.76602 1.90854 1.30671 1.71111 1.51042 1.20312 0.94018 0.94319 1.09989 1.25798 0.92858 1.01864 1.07951 1.98426 1.19325 1.87093 1.91885 1.83302 1.02974 0.98032 1.62612 1.24874 0.99080 0.99446 1.10793 1.24515 0.88647 1.03630 0.97392 1.86624 1.34929 1.93044 1.19785 0.94491 0.84511 0.74535 0.85844 1.21130 0.97338 0.91832 0.99382 1.23376 0.94130 1.02499 0.96093 1.21098 1.00849 0.90889 0.97558 1.21361 0.94151 0.99230 1.03378 1.21258 0.95185 0.97580 0.97126 1.21489 1.00894 0.92449 1.08747 0.92219 0.86637 0.91976 0.91917 0.88163 0.74996 0.83271 0.76091 1.19393 1.18259 0.80504 0.87772 0.89818 0.83927 0.84302 0.84225 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.01 9.42 -92.48 -0.87 -1.88 16 3 C 0.11 0.45 6.66 22.50 0.15 0.60 16 4 C -0.12 -0.32 5.30 -19.77 -0.10 -0.43 16 5 C -0.06 -0.01 3.75 -11.01 -0.04 -0.05 16 6 H 0.10 0.08 7.31 -2.39 -0.02 0.06 16 7 C -0.14 -0.12 7.27 31.18 0.23 0.11 16 8 C 0.12 0.13 4.33 45.57 0.20 0.32 16 9 H 0.09 0.42 7.46 -2.38 -0.02 0.40 16 10 N -0.69 -0.61 5.24 -443.38 -2.32 -2.94 16 11 C 0.57 3.95 7.79 86.55 0.67 4.62 16 12 O -0.56 -8.04 14.51 -4.21 -0.06 -8.11 16 13 C -0.17 -0.56 5.98 -19.84 -0.12 -0.68 16 14 C -0.14 -0.61 6.87 67.35 0.46 -0.14 16 15 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 16 S 0.27 -0.52 20.19 -56.49 -1.14 -1.66 16 17 C -0.22 0.92 5.65 24.51 0.14 1.06 16 18 C -0.03 0.18 2.94 71.23 0.21 0.39 16 19 O -0.54 1.79 12.88 -148.98 -1.92 -0.13 16 20 Si 0.70 -3.84 30.92 68.60 2.12 -1.72 16 21 C -0.07 0.19 9.75 22.70 0.22 0.42 16 22 C -0.12 0.24 7.29 31.12 0.23 0.47 16 23 C -0.09 -0.09 8.55 22.25 0.19 0.10 16 24 C -0.16 -0.12 10.04 22.28 0.22 0.10 16 25 C -0.09 -0.10 10.04 22.25 0.22 0.13 16 26 C -0.22 -0.46 9.04 22.37 0.20 -0.26 16 27 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 28 H 0.12 -0.78 8.14 -2.38 -0.02 -0.80 16 29 H 0.06 -0.29 7.66 -2.39 -0.02 -0.31 16 30 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.10 -0.04 6.38 -2.39 -0.02 -0.06 16 32 H 0.41 -1.75 7.24 -92.71 -0.67 -2.42 16 33 H 0.15 -1.38 7.96 -2.38 -0.02 -1.40 16 34 H 0.39 -3.22 8.70 -74.06 -0.64 -3.86 16 35 H -0.27 -0.32 7.11 99.48 0.71 0.39 16 36 H -0.26 0.49 7.11 99.48 0.71 1.19 16 37 H 0.18 -1.32 7.10 -2.91 -0.02 -1.34 16 38 H 0.10 -0.30 7.66 -2.39 -0.02 -0.32 16 39 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.14 -0.36 6.72 -2.91 -0.02 -0.38 16 41 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 42 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 43 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -18.70 384.34 -0.26 -18.96 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: -0.19 Total: -10.30 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 4.19 Total: 7.80 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -2.32 Total: -2.94 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -2.85 Total: -10.11 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.12 Total: -1.72 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -1.14 Total: -1.66 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -18.70 -0.26 -18.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13431040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.239 kcal (2) G-P(sol) polarization free energy of solvation -18.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds