Wall clock time and date at job start Sun Mar 7 2021 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00128 * 2 1 4 4 C 1.38709 * 120.05826 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.02672 * 359.96119 * 4 3 2 6 6 H 1.08996 * 112.84574 * 348.82060 * 5 4 3 7 7 C 1.53773 * 113.61599 * 120.02136 * 5 4 3 8 8 C 1.53778 * 87.08243 * 139.98081 * 7 5 4 9 9 H 1.08998 * 113.61495 * 220.01984 * 8 7 5 10 10 N 1.46500 * 113.61523 * 89.19781 * 8 7 5 11 11 C 1.34776 * 119.99738 * 155.00226 * 10 8 7 12 12 O 1.21616 * 120.00289 * 359.97438 * 11 10 8 13 13 C 1.47379 * 119.99636 * 179.97438 * 11 10 8 14 14 C 1.36414 * 127.19805 * 0.02562 * 13 11 10 15 15 O 1.33651 * 108.40009 * 179.97438 * 14 13 11 16 16 C 1.34214 * 110.90938 * 0.02562 * 15 14 13 17 17 C 1.50698 * 125.43805 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46977 * 244.97457 * 17 16 15 19 19 Si 1.86298 * 109.46921 * 4.97276 * 17 16 15 20 20 C 1.34178 * 109.12458 * 359.74523 * 16 15 14 21 21 C 1.53784 * 87.08160 * 334.56417 * 8 7 5 22 22 C 1.38164 * 119.94688 * 179.97438 * 4 3 2 23 23 C 1.38245 * 120.05645 * 0.02562 * 22 4 3 24 24 C 1.38290 * 120.10982 * 359.97438 * 23 22 4 25 25 C 1.38126 * 120.05768 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46735 * 300.00020 * 1 2 3 27 27 H 1.09002 * 109.46782 * 59.99820 * 1 2 3 28 28 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09003 * 113.61493 * 254.53067 * 7 5 4 30 30 H 1.09001 * 113.61758 * 25.43238 * 7 5 4 31 31 H 0.96996 * 120.00080 * 334.99931 * 10 8 7 32 32 H 1.08001 * 125.79515 * 359.96668 * 14 13 11 33 33 H 1.08994 * 109.47217 * 124.97016 * 17 16 15 34 34 H 0.96701 * 114.00233 * 60.00074 * 18 17 16 35 35 H 1.48507 * 109.99873 * 179.97438 * 19 17 16 36 36 H 1.48501 * 110.00361 * 301.32168 * 19 17 16 37 37 H 1.08000 * 127.02397 * 180.25929 * 20 16 15 38 38 H 1.09001 * 113.61615 * 270.88681 * 21 8 7 39 39 H 1.08999 * 113.61679 * 139.97764 * 21 8 7 40 40 H 1.08005 * 119.97654 * 179.97438 * 22 4 3 41 41 H 1.07995 * 119.94685 * 179.72562 * 23 22 4 42 42 H 1.07995 * 119.97112 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.03163 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2538 0.0221 -0.0002 6 1 3.6592 -0.8703 0.1951 7 6 5.1802 -0.1099 -1.2204 8 6 6.2406 -0.6676 -0.2564 9 1 7.2496 -0.3110 -0.4634 10 7 6.1742 -2.1214 -0.0883 11 6 7.2733 -2.8077 0.2825 12 8 8.3202 -2.2202 0.4772 13 6 7.2063 -4.2702 0.4522 14 6 6.1174 -5.0721 0.2736 15 8 6.4768 -6.3342 0.5271 16 6 7.7724 -6.4035 0.8706 17 6 8.5167 -7.6656 1.2229 18 8 8.9238 -7.6122 2.5916 19 14 7.4029 -9.1363 0.9633 20 6 8.3007 -5.1704 0.8442 21 6 5.5268 0.1165 0.8575 22 6 4.0560 2.5170 -0.0011 23 6 3.3020 3.6758 -0.0005 24 6 1.9209 3.6047 0.0000 25 6 1.2914 2.3753 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.8334 -0.8361 -1.9556 30 1 5.4548 0.8464 -1.6657 31 1 5.3393 -2.5900 -0.2439 32 1 5.1322 -4.7430 -0.0222 33 1 9.3959 -7.7588 0.5856 34 1 8.1910 -7.5291 3.2170 35 1 8.1254 -10.3875 1.3067 36 1 6.1850 -9.0057 1.8029 37 1 9.3210 -4.8951 1.0671 38 1 5.8960 1.1347 0.9803 39 1 5.4595 -0.4271 1.7999 40 1 5.1345 2.5752 -0.0011 41 1 3.7923 4.6380 0.0035 42 1 1.3341 4.5113 0.0000 43 1 0.2128 2.3203 0.0014 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:19 Heat of formation + Delta-G solvation = -26.084787 kcal Electronic energy + Delta-G solvation = -27152.676015 eV Core-core repulsion = 23132.847277 eV Total energy + Delta-G solvation = -4019.828738 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.72659 -41.72828 -40.73375 -39.28798 -38.15556 -38.02564 -34.84132 -33.82810 -32.15939 -31.40906 -31.04396 -28.15750 -26.92707 -26.69196 -26.25458 -24.82379 -23.08630 -22.55712 -22.33040 -21.11559 -20.17615 -19.35928 -19.03800 -17.84490 -17.62372 -17.54049 -17.22778 -16.87247 -16.67241 -16.63416 -16.17556 -16.03274 -15.67489 -15.35477 -15.28659 -15.08737 -14.67021 -14.30055 -14.23132 -14.02032 -13.96602 -13.60942 -13.46331 -13.15675 -12.97991 -12.95157 -12.75019 -12.29060 -12.13983 -12.01359 -11.76678 -11.65252 -11.26426 -11.16248 -10.98341 -10.76201 -10.18048 -9.80962 -9.75165 -9.06769 -4.91085 0.24905 0.34877 0.49204 0.81049 1.18210 1.53103 1.75856 1.95381 2.00560 2.21996 2.38732 2.76449 3.21571 3.45295 3.49056 3.54816 3.67426 3.71350 3.92235 3.96680 4.00515 4.11107 4.19823 4.31735 4.33381 4.38039 4.43176 4.46384 4.49465 4.50914 4.65802 4.71330 4.74732 4.79471 4.84963 4.88733 4.95375 5.01224 5.10542 5.12565 5.17049 5.41005 5.46452 5.59620 5.66418 5.82376 5.85783 6.34483 6.44680 6.45184 7.12615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.055 4.055 6 H 0.103 0.897 7 C -0.122 4.122 8 C 0.117 3.883 9 H 0.087 0.913 10 N -0.693 5.693 11 C 0.589 3.411 12 O -0.585 6.585 13 C -0.269 4.269 14 C 0.067 3.933 15 O -0.165 6.165 16 C -0.050 4.050 17 C -0.046 4.046 18 O -0.540 6.540 19 Si 0.792 3.208 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.164 4.164 24 C -0.094 4.094 25 C -0.217 4.217 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.415 0.585 32 H 0.261 0.739 33 H 0.148 0.852 34 H 0.390 0.610 35 H -0.288 1.288 36 H -0.285 1.285 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -0.760 -3.645 8.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.074 4.074 6 H 0.121 0.879 7 C -0.160 4.160 8 C 0.012 3.988 9 H 0.106 0.894 10 N -0.344 5.344 11 C 0.378 3.622 12 O -0.466 6.466 13 C -0.273 4.273 14 C -0.004 4.004 15 O -0.060 6.060 16 C -0.099 4.099 17 C -0.154 4.154 18 O -0.348 6.348 19 Si 0.695 3.305 20 C -0.169 4.169 21 C -0.181 4.181 22 C -0.105 4.105 23 C -0.182 4.182 24 C -0.112 4.112 25 C -0.236 4.236 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.253 0.747 32 H 0.277 0.723 33 H 0.166 0.834 34 H 0.240 0.760 35 H -0.215 1.215 36 H -0.212 1.212 37 H 0.163 0.837 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.080 -1.529 -3.421 8.010 hybrid contribution -0.364 1.012 1.306 1.692 sum -7.444 -0.517 -2.115 7.756 Atomic orbital electron populations 1.23280 0.76936 1.05384 1.01863 1.86007 1.22816 1.26692 1.88685 1.19077 0.92236 0.84732 0.97116 1.19243 0.90318 0.95985 1.06147 1.21339 0.93541 0.95492 0.96994 0.87851 1.23374 0.93967 1.02557 0.96092 1.21845 1.00025 0.79489 0.97481 0.89438 1.45342 1.12415 1.07457 1.69174 1.17516 0.83311 0.85852 0.75474 1.90787 1.31644 1.71278 1.52844 1.21456 0.96341 0.93684 1.15835 1.25283 1.00047 0.79343 0.95712 1.83724 1.26016 1.29898 1.66363 1.22701 0.82261 0.97948 1.06948 1.24729 1.05773 0.99385 0.85508 1.86650 1.37785 1.95157 1.15244 0.93438 0.74385 0.72439 0.90275 1.22572 1.00045 0.91298 1.03030 1.23583 0.95511 1.01406 0.97625 1.21103 1.00817 0.90976 0.97595 1.21354 0.94182 0.99221 1.03448 1.21256 0.95151 0.97629 0.97128 1.21496 1.00913 0.92456 1.08731 0.92288 0.92048 0.86456 0.89448 0.87947 0.74712 0.72327 0.83406 0.75951 1.21486 1.21169 0.83737 0.88277 0.91800 0.84031 0.84419 0.84292 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.42 9.43 -92.37 -0.87 -1.29 16 3 C 0.11 0.31 6.66 22.51 0.15 0.46 16 4 C -0.12 -0.19 5.30 -19.77 -0.10 -0.30 16 5 C -0.06 0.08 3.75 -11.01 -0.04 0.04 16 6 H 0.10 -0.18 7.32 -2.39 -0.02 -0.20 16 7 C -0.12 0.40 7.29 31.12 0.23 0.62 16 8 C 0.12 0.04 4.32 45.52 0.20 0.23 16 9 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 10 N -0.69 0.53 5.26 -443.34 -2.33 -1.80 16 11 C 0.59 4.06 7.81 86.65 0.68 4.74 16 12 O -0.58 -9.89 16.58 -4.08 -0.07 -9.96 16 13 C -0.27 -0.83 6.31 -18.99 -0.12 -0.95 16 14 C 0.07 -0.33 11.61 67.39 0.78 0.45 16 15 O -0.16 0.33 8.90 4.49 0.04 0.37 16 16 C -0.05 -0.05 6.18 24.76 0.15 0.10 16 17 C -0.05 0.06 2.97 71.24 0.21 0.27 16 18 O -0.54 -1.16 12.88 -148.98 -1.92 -3.08 16 19 Si 0.79 -2.56 32.09 68.60 2.20 -0.36 16 20 C -0.15 -0.83 10.90 23.65 0.26 -0.58 16 21 C -0.14 0.01 7.26 31.12 0.23 0.24 16 22 C -0.09 -0.04 8.61 22.25 0.19 0.15 16 23 C -0.16 -0.05 10.04 22.28 0.22 0.17 16 24 C -0.09 -0.04 10.04 22.26 0.22 0.18 16 25 C -0.22 -0.27 9.04 22.37 0.20 -0.06 16 26 H 0.06 -0.33 7.66 -2.39 -0.02 -0.35 16 27 H 0.06 -0.37 7.66 -2.39 -0.02 -0.39 16 28 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.10 -0.37 7.72 -2.39 -0.02 -0.39 16 31 H 0.42 -3.32 7.67 -92.71 -0.71 -4.03 16 32 H 0.26 -4.11 7.47 -2.91 -0.02 -4.14 16 33 H 0.15 -0.56 7.96 -2.39 -0.02 -0.58 16 34 H 0.39 -1.41 8.70 -74.06 -0.64 -2.05 16 35 H -0.29 -0.91 7.11 99.48 0.71 -0.20 16 36 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 37 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.10 -0.09 6.31 -2.39 -0.02 -0.11 16 39 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.14 -0.41 6.66 -2.91 -0.02 -0.43 16 41 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.14 -0.33 6.30 -2.91 -0.02 -0.35 16 Total: 0.00 -24.45 364.78 1.37 -23.08 By element: Atomic # 1 Polarization: -13.49 SS G_CDS: -0.25 Total: -13.75 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.57 Total: 6.79 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -2.33 Total: -1.80 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -2.82 Total: -13.96 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.20 Total: -0.36 kcal Total: -24.45 1.37 -23.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.007 kcal (2) G-P(sol) polarization free energy of solvation -24.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds