Wall clock time and date at job start Sun Mar 7 2021 05:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 116.99888 * 2 1 4 4 C 1.38715 * 120.05338 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.02962 * 359.97438 * 4 3 2 6 6 H 1.09002 * 112.84782 * 9.66880 * 5 4 3 7 7 C 1.53786 * 113.61519 * 140.86290 * 5 4 3 8 8 C 1.54049 * 86.98426 * 140.01979 * 7 5 4 9 9 H 1.09003 * 113.69637 * 220.00673 * 8 7 5 10 10 N 1.46499 * 113.61109 * 89.11993 * 8 7 5 11 11 C 1.34774 * 120.00133 * 107.50629 * 10 8 7 12 12 O 1.21278 * 119.99987 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99849 * 179.97438 * 11 10 8 14 14 C 1.53539 * 109.82403 * 278.20743 * 13 11 10 15 15 C 1.53038 * 108.56266 * 179.51113 * 14 13 11 16 16 C 1.50207 * 110.31874 * 49.57264 * 15 14 13 17 17 C 1.50692 * 118.54952 * 159.97127 * 16 15 14 18 18 O 1.42902 * 109.47326 * 69.97953 * 17 16 15 19 19 Si 1.86299 * 109.47088 * 189.98161 * 17 16 15 20 20 C 1.31119 * 122.90309 * 339.94439 * 16 15 14 21 21 N 1.38926 * 121.84955 * 0.41324 * 20 16 15 22 22 C 1.53781 * 113.61630 * 238.47238 * 5 4 3 23 23 C 1.38165 * 119.94328 * 180.27928 * 4 3 2 24 24 C 1.38247 * 120.05564 * 359.49338 * 23 4 3 25 25 C 1.38291 * 120.10995 * 0.50666 * 24 23 4 26 26 C 1.38121 * 120.05693 * 359.74489 * 25 24 23 27 27 H 1.08999 * 109.46906 * 59.99479 * 1 2 3 28 28 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47153 * 300.00180 * 1 2 3 30 30 H 1.08992 * 113.61675 * 254.61723 * 7 5 4 31 31 H 1.09000 * 113.60973 * 25.52011 * 7 5 4 32 32 H 0.96999 * 119.99715 * 287.50199 * 10 8 7 33 33 H 1.09010 * 109.81374 * 39.13951 * 13 11 10 34 34 H 1.08999 * 109.62572 * 299.23496 * 14 13 11 35 35 H 1.08998 * 109.61983 * 59.79284 * 14 13 11 36 36 H 1.09004 * 109.33037 * 289.31273 * 15 14 13 37 37 H 1.09001 * 109.33236 * 169.83390 * 15 14 13 38 38 H 1.09007 * 109.47284 * 309.97790 * 17 16 15 39 39 H 0.96700 * 113.99683 * 60.00076 * 18 17 16 40 40 H 1.48508 * 110.00006 * 179.97438 * 19 17 16 41 41 H 1.48496 * 109.99919 * 301.31262 * 19 17 16 42 42 H 1.07998 * 119.07531 * 180.41956 * 20 16 15 43 43 H 0.96994 * 120.56037 * 166.65791 * 21 20 16 44 44 H 1.08999 * 113.61567 * 334.48200 * 22 5 4 45 45 H 1.09000 * 113.61379 * 105.30323 * 22 5 4 46 46 H 1.07999 * 119.97516 * 179.74606 * 23 4 3 47 47 H 1.07999 * 119.95015 * 180.26036 * 24 23 4 48 48 H 1.08001 * 119.97356 * 179.77599 * 25 24 23 49 49 H 1.07992 * 120.02994 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0221 -0.0005 6 1 3.6550 -0.8730 -0.1688 7 6 5.5054 0.1024 -0.8904 8 6 6.2453 -0.6660 0.2211 9 1 7.2594 -0.3087 0.4002 10 7 6.1724 -2.1220 0.0764 11 6 7.2616 -2.8162 -0.3086 12 8 8.3018 -2.2356 -0.5356 13 6 7.1867 -4.3141 -0.4569 14 6 7.3475 -4.9819 0.9163 15 6 7.2549 -6.4986 0.7341 16 6 8.1650 -6.9475 -0.3733 17 6 8.5782 -8.3958 -0.4236 18 8 7.4527 -9.2001 -0.7818 19 14 9.9258 -8.6135 -1.6914 20 6 8.6154 -6.1349 -1.2985 21 7 8.2847 -4.7857 -1.3135 22 6 5.2078 -0.0916 1.2002 23 6 4.0560 2.5171 0.0053 24 6 3.3019 3.6758 0.0011 25 6 1.9209 3.6048 0.0016 26 6 1.2914 2.3753 0.0010 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 5.4149 -0.4551 -1.8226 31 1 5.8722 1.1182 -1.0374 32 1 5.3403 -2.5863 0.2576 33 1 6.2291 -4.5945 -0.8956 34 1 8.3185 -4.7225 1.3381 35 1 6.5538 -4.6442 1.5827 36 1 6.2280 -6.7707 0.4899 37 1 7.5451 -6.9918 1.6619 38 1 8.9472 -8.7026 0.5552 39 1 7.0717 -8.9820 -1.6434 40 1 10.3425 -10.0377 -1.7502 41 1 9.4455 -8.1690 -3.0244 42 1 9.2616 -6.5255 -2.0707 43 1 8.7702 -4.1652 -1.8793 44 1 5.4934 0.8713 1.6236 45 1 4.8764 -0.8045 1.9552 46 1 5.1344 2.5752 0.0090 47 1 3.7922 4.6381 0.0014 48 1 1.3340 4.5114 0.0020 49 1 0.2128 2.3204 0.0018 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_15413834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:29 Heat of formation + Delta-G solvation = -24.966560 kcal Electronic energy + Delta-G solvation = -29859.125791 eV Core-core repulsion = 25754.215107 eV Total energy + Delta-G solvation = -4104.910684 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.85830 -41.18340 -40.03348 -39.09679 -38.05331 -37.42305 -34.75355 -33.21298 -32.96762 -31.72011 -31.05177 -28.20909 -27.67220 -26.68573 -26.04662 -25.34726 -23.79298 -23.12111 -22.60334 -21.88708 -20.17772 -19.45001 -19.12370 -18.94206 -18.10195 -17.42452 -17.16821 -16.79354 -16.70857 -16.65466 -16.30327 -16.07865 -15.79626 -15.36144 -15.32567 -15.19198 -15.04794 -14.86107 -14.47501 -14.33175 -14.10169 -14.00876 -13.93084 -13.45566 -13.14216 -13.00945 -12.98326 -12.91148 -12.76239 -12.38403 -12.29957 -12.02799 -11.95169 -11.75722 -11.67003 -11.63030 -11.24994 -11.16267 -10.89911 -10.29343 -10.14142 -9.76232 -9.07624 -8.45948 -4.88547 0.34207 0.48415 1.33073 1.41072 1.45580 1.57225 1.86833 1.98992 2.37614 2.63903 2.75848 3.47818 3.50956 3.59337 3.67102 3.70814 3.80273 3.88972 3.92373 4.00143 4.04803 4.10577 4.19443 4.31350 4.31915 4.35914 4.45639 4.47068 4.48917 4.62441 4.64390 4.70229 4.73300 4.73823 4.77777 4.78819 4.85302 4.94612 5.01360 5.04390 5.10169 5.17420 5.25253 5.31052 5.40556 5.46211 5.57931 5.59263 5.66127 5.85253 6.24351 6.43653 6.44819 6.65313 6.82552 7.09602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.099 0.901 7 C -0.140 4.140 8 C 0.119 3.881 9 H 0.091 0.909 10 N -0.695 5.695 11 C 0.517 3.483 12 O -0.569 6.569 13 C 0.139 3.861 14 C -0.120 4.120 15 C -0.051 4.051 16 C -0.282 4.282 17 C -0.055 4.055 18 O -0.556 6.556 19 Si 0.744 3.256 20 C 0.138 3.862 21 N -0.736 5.736 22 C -0.124 4.124 23 C -0.086 4.086 24 C -0.163 4.163 25 C -0.094 4.094 26 C -0.218 4.218 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.416 0.584 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.382 0.618 40 H -0.311 1.311 41 H -0.284 1.284 42 H 0.142 0.858 43 H 0.407 0.593 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.144 0.856 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 3.324 1.402 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.118 0.882 7 C -0.179 4.179 8 C 0.014 3.986 9 H 0.109 0.891 10 N -0.347 5.347 11 C 0.303 3.697 12 O -0.448 6.448 13 C 0.030 3.970 14 C -0.159 4.159 15 C -0.089 4.089 16 C -0.292 4.292 17 C -0.166 4.166 18 O -0.364 6.364 19 Si 0.652 3.348 20 C 0.017 3.983 21 N -0.369 5.369 22 C -0.162 4.162 23 C -0.104 4.104 24 C -0.182 4.182 25 C -0.112 4.112 26 C -0.237 4.237 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.253 0.747 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.230 0.770 40 H -0.240 1.240 41 H -0.211 1.211 42 H 0.159 0.841 43 H 0.244 0.756 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.161 0.839 47 H 0.157 0.843 48 H 0.157 0.843 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.090 2.926 1.166 4.412 hybrid contribution -1.638 0.006 -0.765 1.808 sum -4.728 2.932 0.401 5.578 Atomic orbital electron populations 1.23271 0.76966 1.05317 1.01889 1.86011 1.22813 1.26813 1.88715 1.19106 0.92334 0.84680 0.97205 1.19265 0.90270 0.96072 1.06094 1.21342 0.93723 0.95343 0.97202 0.88250 1.23601 0.95315 1.01490 0.97474 1.21873 0.99906 0.79685 0.97159 0.89108 1.45538 1.13659 1.07135 1.68339 1.20841 0.83281 0.89831 0.75741 1.90720 1.31090 1.71828 1.51136 1.21081 0.92922 0.89057 0.93984 1.21836 1.03569 0.96218 0.94291 1.19943 0.98513 0.93453 0.96950 1.20912 1.11569 0.95762 1.00972 1.24846 0.94690 0.88798 1.08252 1.86544 1.47125 1.61339 1.41406 0.94420 0.83706 0.80029 0.76672 1.20609 0.97133 0.83898 0.96687 1.44374 1.38042 1.06553 1.47907 1.23377 0.94228 1.02490 0.96139 1.21097 1.00847 0.90879 0.97555 1.21363 0.94136 0.99272 1.03382 1.21256 0.95211 0.97568 0.97139 1.21492 1.00892 0.92497 1.08775 0.92225 0.86596 0.92034 0.91691 0.88300 0.74667 0.87616 0.91798 0.88417 0.91362 0.90789 0.87065 0.76951 1.23980 1.21079 0.84136 0.75626 0.87965 0.89774 0.83880 0.84321 0.84291 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.67 9.42 -92.41 -0.87 -1.54 16 3 C 0.11 0.34 6.66 22.51 0.15 0.49 16 4 C -0.12 -0.17 5.30 -19.77 -0.10 -0.28 16 5 C -0.06 0.10 3.75 -11.01 -0.04 0.06 16 6 H 0.10 -0.11 7.31 -2.39 -0.02 -0.13 16 7 C -0.14 0.22 7.28 31.21 0.23 0.45 16 8 C 0.12 -0.21 4.33 45.61 0.20 -0.01 16 9 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 10 N -0.70 2.25 5.26 -439.61 -2.31 -0.07 16 11 C 0.52 0.74 7.08 87.66 0.62 1.36 16 12 O -0.57 -5.51 15.70 -3.02 -0.05 -5.56 16 13 C 0.14 -0.26 3.36 44.33 0.15 -0.11 16 14 C -0.12 0.33 5.47 30.79 0.17 0.49 16 15 C -0.05 0.07 5.85 29.71 0.17 0.24 16 16 C -0.28 0.02 5.37 -16.76 -0.09 -0.07 16 17 C -0.06 -0.04 2.81 71.23 0.20 0.16 16 18 O -0.56 -2.15 12.88 -148.98 -1.92 -4.07 16 19 Si 0.74 -0.02 29.96 68.60 2.06 2.04 16 20 C 0.14 -0.06 9.61 83.41 0.80 0.74 16 21 N -0.74 -0.24 5.46 -328.99 -1.80 -2.03 16 22 C -0.12 0.49 7.29 31.12 0.23 0.71 16 23 C -0.09 0.01 8.53 22.25 0.19 0.20 16 24 C -0.16 0.02 10.04 22.28 0.22 0.24 16 25 C -0.09 -0.03 10.04 22.25 0.22 0.19 16 26 C -0.22 -0.30 9.04 22.37 0.20 -0.10 16 27 H 0.06 -0.30 7.66 -2.39 -0.02 -0.32 16 28 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.06 -0.33 7.66 -2.39 -0.02 -0.35 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.10 -0.24 6.41 -2.39 -0.02 -0.25 16 32 H 0.42 -3.41 8.70 -92.71 -0.81 -4.21 16 33 H 0.11 -0.54 8.14 -2.38 -0.02 -0.56 16 34 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 37 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.11 0.03 7.96 -2.38 -0.02 0.01 16 39 H 0.38 -0.69 8.70 -74.06 -0.64 -1.33 16 40 H -0.31 -2.63 7.11 99.48 0.71 -1.93 16 41 H -0.28 -0.85 6.82 99.48 0.68 -0.17 16 42 H 0.14 -0.36 4.31 -2.91 -0.01 -0.37 16 43 H 0.41 0.48 8.12 -92.71 -0.75 -0.27 16 44 H 0.10 -0.45 7.62 -2.39 -0.02 -0.47 16 45 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.14 -0.55 6.73 -2.91 -0.02 -0.57 16 47 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 48 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 49 H 0.14 -0.29 6.30 -2.91 -0.02 -0.30 16 Total: 0.00 -18.30 390.43 -1.46 -19.75 By element: Atomic # 1 Polarization: -13.11 SS G_CDS: -1.19 Total: -14.30 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.63 Total: 5.78 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -4.11 Total: -2.10 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -2.84 Total: -11.17 kcal Atomic # 14 Polarization: -0.02 SS G_CDS: 2.06 Total: 2.04 kcal Total: -18.30 -1.46 -19.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_15413834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.213 kcal (2) G-P(sol) polarization free energy of solvation -18.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds