Wall clock time and date at job start Sun Mar 7 2021 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00558 * 2 1 4 4 C 1.38704 * 120.06070 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.02471 * 359.97438 * 4 3 2 6 6 H 1.09000 * 112.85151 * 11.20587 * 5 4 3 7 7 C 1.53784 * 113.68787 * 142.46514 * 5 4 3 8 8 C 1.53778 * 87.08008 * 139.99340 * 7 5 4 9 9 H 1.09006 * 113.69483 * 220.00756 * 8 7 5 10 10 N 1.46501 * 113.61732 * 89.11874 * 8 7 5 11 11 C 1.34769 * 120.00299 * 107.50338 * 10 8 7 12 12 O 1.21277 * 120.00253 * 4.97054 * 11 10 8 13 13 C 1.50704 * 119.99980 * 184.97481 * 11 10 8 14 14 C 1.53045 * 109.32995 * 143.90932 * 13 11 10 15 15 C 1.53537 * 108.56112 * 169.82938 * 14 13 11 16 16 N 1.47030 * 107.66174 * 299.05500 * 15 14 13 17 17 C 1.38919 * 118.88277 * 43.65957 * 16 15 14 18 18 C 1.31112 * 121.85045 * 346.69228 * 17 16 15 19 19 C 1.50703 * 118.54852 * 180.37701 * 18 17 16 20 20 O 1.42894 * 109.47430 * 256.90171 * 19 18 17 21 21 Si 1.86300 * 109.47058 * 16.90423 * 19 18 17 22 22 C 1.53776 * 87.08272 * 334.56565 * 8 7 5 23 23 C 1.38159 * 119.94720 * 180.27479 * 4 3 2 24 24 C 1.38251 * 120.05542 * 359.49320 * 23 4 3 25 25 C 1.38288 * 120.10976 * 0.50692 * 24 23 4 26 26 C 1.38122 * 120.05334 * 359.74601 * 25 24 23 27 27 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46391 * 299.99883 * 1 2 3 29 29 H 1.08992 * 109.47190 * 59.99407 * 1 2 3 30 30 H 1.08996 * 113.61776 * 25.44511 * 7 5 4 31 31 H 1.09006 * 113.61705 * 254.54022 * 7 5 4 32 32 H 0.97008 * 119.99725 * 287.50575 * 10 8 7 33 33 H 1.09004 * 109.32877 * 24.26105 * 13 11 10 34 34 H 1.09004 * 109.62040 * 50.11340 * 14 13 11 35 35 H 1.08996 * 109.62223 * 289.55928 * 14 13 11 36 36 H 1.09005 * 109.82021 * 179.51120 * 15 14 13 37 37 H 1.09005 * 109.87164 * 58.62373 * 15 14 13 38 38 H 0.96998 * 120.55752 * 223.64495 * 16 15 14 39 39 H 1.07999 * 119.07653 * 166.40426 * 17 16 15 40 40 H 1.09003 * 109.47054 * 136.89721 * 19 18 17 41 41 H 0.96702 * 114.00450 * 294.76756 * 20 19 18 42 42 H 1.48502 * 110.00016 * 59.99568 * 21 19 18 43 43 H 1.48492 * 110.00068 * 181.31613 * 21 19 18 44 44 H 1.09008 * 113.61555 * 139.97552 * 22 8 7 45 45 H 1.09003 * 113.61841 * 270.88602 * 22 8 7 46 46 H 1.07996 * 119.97439 * 179.74412 * 23 4 3 47 47 H 1.07998 * 119.94536 * 180.25773 * 24 23 4 48 48 H 1.07997 * 119.97644 * 179.76948 * 25 24 23 49 49 H 1.08004 * 120.02932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4312 1.2847 -0.0005 5 6 4.2537 0.0220 -0.0005 6 1 3.6591 -0.8705 -0.1953 7 6 5.5263 0.1136 -0.8590 8 6 6.2399 -0.6697 0.2555 9 1 7.2497 -0.3153 0.4625 10 7 6.1705 -2.1234 0.0880 11 6 7.2680 -2.8122 -0.2825 12 8 8.3336 -2.2432 -0.3897 13 6 7.1712 -4.2896 -0.5637 14 6 8.1082 -4.6479 -1.7194 15 6 8.1920 -6.1773 -1.8247 16 7 8.7404 -6.6823 -0.5574 17 6 8.2674 -6.1530 0.6367 18 6 7.5492 -5.0567 0.6711 19 6 7.0819 -4.5435 2.0088 20 8 5.6999 -4.8614 2.1846 21 14 8.0801 -5.3426 3.3637 22 6 5.1808 -0.1094 1.2194 23 6 4.0561 2.5169 0.0052 24 6 3.3021 3.6757 0.0009 25 6 1.9210 3.6047 0.0014 26 6 1.2915 2.3753 0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 5.8968 1.1311 -0.9835 31 1 5.4580 -0.4312 -1.8007 32 1 5.3345 -2.5903 0.2437 33 1 6.1464 -4.5379 -0.8400 34 1 9.1003 -4.2395 -1.5264 35 1 7.7154 -4.2378 -2.6498 36 1 8.8489 -6.4557 -2.6488 37 1 7.1974 -6.5925 -1.9885 38 1 9.4209 -7.3736 -0.5552 39 1 8.4938 -6.6613 1.5623 40 1 7.2141 -3.4623 2.0496 41 1 5.1109 -4.4138 1.5618 42 1 9.5194 -5.0196 3.1922 43 1 7.6078 -4.8690 4.6894 44 1 4.8333 -0.8342 1.9557 45 1 5.4567 0.8472 1.6631 46 1 5.1345 2.5749 0.0090 47 1 3.7924 4.6379 0.0012 48 1 1.3341 4.5113 0.0018 49 1 0.2129 2.3203 0.0009 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_15608500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:32 Heat of formation + Delta-G solvation = -29.807932 kcal Electronic energy + Delta-G solvation = -30920.928163 eV Core-core repulsion = 26815.807542 eV Total energy + Delta-G solvation = -4105.120622 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94129 -41.25919 -40.00864 -38.90809 -38.04279 -37.47405 -34.66511 -33.38428 -32.74835 -31.77838 -31.07277 -28.19550 -27.45622 -26.74269 -26.38522 -25.51970 -23.29533 -23.15727 -22.65489 -21.97596 -20.18549 -19.26033 -19.16301 -18.79400 -18.17295 -17.97951 -17.35847 -16.92879 -16.72183 -16.66694 -16.43293 -15.95702 -15.54691 -15.39269 -15.28322 -15.01934 -14.82649 -14.72240 -14.50496 -14.37036 -14.05958 -14.03862 -13.91326 -13.51431 -13.23428 -13.16959 -13.01997 -12.78744 -12.58334 -12.46137 -12.30736 -12.03707 -12.02962 -11.78809 -11.68756 -11.42043 -11.24454 -11.20232 -10.90499 -10.79433 -10.13663 -9.78791 -9.09650 -8.43361 -4.96950 0.31812 0.46277 1.27608 1.39509 1.56356 1.61997 1.94691 2.13538 2.36534 2.68034 2.73400 3.43030 3.52818 3.63096 3.65411 3.81758 3.85911 3.89882 3.96712 3.99818 4.07668 4.14584 4.16637 4.29020 4.30621 4.34670 4.36070 4.39228 4.43373 4.46581 4.59259 4.63186 4.67732 4.71494 4.73992 4.74435 4.79200 4.85143 4.91528 4.95818 5.07364 5.13858 5.19584 5.25000 5.38294 5.44139 5.46465 5.56739 5.63650 5.83040 6.34493 6.42401 6.43478 6.72058 6.97725 7.17330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.053 4.053 6 H 0.102 0.898 7 C -0.138 4.138 8 C 0.115 3.885 9 H 0.083 0.917 10 N -0.703 5.703 11 C 0.525 3.475 12 O -0.581 6.581 13 C -0.036 4.036 14 C -0.126 4.126 15 C 0.124 3.876 16 N -0.746 5.746 17 C 0.169 3.831 18 C -0.302 4.302 19 C -0.064 4.064 20 O -0.545 6.545 21 Si 0.805 3.195 22 C -0.127 4.127 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.153 0.847 40 H 0.046 0.954 41 H 0.368 0.632 42 H -0.283 1.283 43 H -0.302 1.302 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -3.473 -2.431 6.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.072 4.072 6 H 0.120 0.880 7 C -0.176 4.176 8 C 0.010 3.990 9 H 0.101 0.899 10 N -0.354 5.354 11 C 0.313 3.687 12 O -0.460 6.460 13 C -0.057 4.057 14 C -0.165 4.165 15 C 0.000 4.000 16 N -0.376 5.376 17 C 0.046 3.954 18 C -0.313 4.313 19 C -0.173 4.173 20 O -0.350 6.350 21 Si 0.709 3.291 22 C -0.165 4.165 23 C -0.105 4.105 24 C -0.182 4.182 25 C -0.111 4.111 26 C -0.235 4.235 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.169 0.831 40 H 0.063 0.937 41 H 0.216 0.784 42 H -0.210 1.210 43 H -0.230 1.230 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.931 -3.470 -1.520 4.790 hybrid contribution -0.881 1.703 -0.692 2.038 sum -3.812 -1.767 -2.213 4.749 Atomic orbital electron populations 1.23284 0.76883 1.05386 1.01910 1.86015 1.22886 1.26736 1.88671 1.19087 0.92232 0.84774 0.97101 1.19226 0.90350 0.95921 1.06207 1.21298 0.93600 0.95509 0.96763 0.88024 1.23536 0.95212 1.01288 0.97596 1.21805 0.99485 0.80377 0.97381 0.89931 1.45728 1.13086 1.07156 1.69468 1.21078 0.83121 0.89929 0.74572 1.90676 1.29855 1.72049 1.53457 1.19733 1.02356 0.88574 0.95054 1.21782 0.99509 0.97832 0.97329 1.21672 1.00400 0.91634 0.86339 1.44684 1.45500 1.44228 1.03181 1.20540 0.92494 0.92156 0.90234 1.20373 1.15486 1.00715 0.94714 1.25191 0.88122 1.00948 1.03042 1.86746 1.15470 1.72485 1.60327 0.92681 0.73845 0.90004 0.72536 1.23378 0.94608 1.02256 0.96253 1.21084 1.00745 0.91008 0.97692 1.21355 0.94206 0.99169 1.03444 1.21263 0.95119 0.97645 0.97052 1.21502 1.00945 0.92409 1.08666 0.86517 0.92095 0.92092 0.88399 0.91367 0.75125 0.87312 0.92601 0.89728 0.88184 0.90713 0.74908 0.83092 0.93672 0.78420 1.20998 1.23021 0.90259 0.88286 0.84181 0.84352 0.84151 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.98 9.43 -92.37 -0.87 -1.85 16 3 C 0.11 0.47 6.66 22.51 0.15 0.62 16 4 C -0.12 -0.37 5.30 -19.77 -0.10 -0.47 16 5 C -0.05 -0.03 3.74 -11.01 -0.04 -0.07 16 6 H 0.10 0.06 7.32 -2.39 -0.02 0.05 16 7 C -0.14 -0.12 7.26 31.12 0.23 0.10 16 8 C 0.12 0.25 4.35 45.51 0.20 0.45 16 9 H 0.08 0.57 7.42 -2.38 -0.02 0.56 16 10 N -0.70 -0.56 5.02 -440.05 -2.21 -2.77 16 11 C 0.52 3.19 5.27 87.66 0.46 3.65 16 12 O -0.58 -9.04 15.67 -3.02 -0.05 -9.09 16 13 C -0.04 -0.03 2.68 -12.43 -0.03 -0.07 16 14 C -0.13 -0.07 5.31 30.79 0.16 0.09 16 15 C 0.12 -0.58 7.16 86.46 0.62 0.04 16 16 N -0.75 2.86 5.83 -345.90 -2.02 0.84 16 17 C 0.17 -0.15 9.59 83.42 0.80 0.65 16 18 C -0.30 -0.53 5.00 -16.76 -0.08 -0.62 16 19 C -0.06 -0.20 2.48 71.24 0.18 -0.02 16 20 O -0.54 -0.74 12.63 -148.98 -1.88 -2.63 16 21 Si 0.80 2.29 30.07 68.60 2.06 4.35 16 22 C -0.13 0.03 7.29 31.12 0.23 0.26 16 23 C -0.09 -0.15 8.60 22.25 0.19 0.04 16 24 C -0.16 -0.21 10.04 22.28 0.22 0.02 16 25 C -0.09 -0.12 10.04 22.25 0.22 0.10 16 26 C -0.22 -0.49 9.04 22.37 0.20 -0.29 16 27 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.06 -0.28 7.66 -2.38 -0.02 -0.30 16 29 H 0.06 -0.28 7.66 -2.39 -0.02 -0.30 16 30 H 0.10 0.00 6.34 -2.39 -0.02 -0.01 16 31 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.41 -1.90 8.17 -92.70 -0.76 -2.66 16 33 H 0.11 -0.43 8.12 -2.38 -0.02 -0.45 16 34 H 0.06 0.39 7.51 -2.39 -0.02 0.37 16 35 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.10 -0.78 8.14 -2.38 -0.02 -0.80 16 37 H 0.07 -0.47 8.14 -2.38 -0.02 -0.49 16 38 H 0.41 -3.31 8.96 -92.71 -0.83 -4.14 16 39 H 0.15 -0.75 4.72 -2.91 -0.01 -0.77 16 40 H 0.05 0.30 6.46 -2.39 -0.02 0.28 16 41 H 0.37 -1.81 8.59 -74.06 -0.64 -2.45 16 42 H -0.28 -2.14 7.11 99.48 0.71 -1.43 16 43 H -0.30 -2.99 7.11 99.48 0.71 -2.28 16 44 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.10 -0.06 7.71 -2.39 -0.02 -0.07 16 46 H 0.14 -0.21 6.68 -2.91 -0.02 -0.23 16 47 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 49 H 0.14 -0.21 6.30 -2.91 -0.02 -0.23 16 Total: 0.00 -21.22 387.08 -1.44 -22.65 By element: Atomic # 1 Polarization: -15.86 SS G_CDS: -1.18 Total: -17.04 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 4.71 Total: 5.54 kcal Atomic # 7 Polarization: 2.30 SS G_CDS: -4.23 Total: -1.93 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -2.80 Total: -13.57 kcal Atomic # 14 Polarization: 2.29 SS G_CDS: 2.06 Total: 4.35 kcal Total: -21.22 -1.44 -22.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_15608500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.156 kcal (2) G-P(sol) polarization free energy of solvation -21.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds