Wall clock time and date at job start Sun Mar 7 2021 05:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00303 * 2 1 4 4 C 1.38708 * 120.05695 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.02731 * 359.96183 * 4 3 2 6 6 H 1.08998 * 112.85151 * 348.80059 * 5 4 3 7 7 C 1.53786 * 113.61268 * 119.99518 * 5 4 3 8 8 C 1.53782 * 87.07798 * 139.98162 * 7 5 4 9 9 H 1.08999 * 113.61564 * 219.93012 * 8 7 5 10 10 N 1.46508 * 113.61722 * 89.11605 * 8 7 5 11 11 C 1.34770 * 120.00332 * 156.52649 * 10 8 7 12 12 O 1.21628 * 119.99802 * 0.02562 * 11 10 8 13 13 C 1.47261 * 120.00331 * 179.97438 * 11 10 8 14 14 C 1.36336 * 126.97020 * 180.19566 * 13 11 10 15 15 C 1.50996 * 126.79409 * 0.02562 * 14 13 11 16 16 C 1.53398 * 108.24697 * 164.57052 * 15 14 13 17 17 C 1.53157 * 109.04145 * 48.48793 * 16 15 14 18 18 C 1.53130 * 109.53014 * 290.42645 * 17 16 15 19 19 N 1.35212 * 108.65982 * 180.25140 * 14 13 11 20 20 C 1.36428 * 109.90165 * 359.73451 * 19 14 13 21 21 C 1.50696 * 125.50087 * 180.02562 * 20 19 14 22 22 O 1.42904 * 109.46742 * 330.00273 * 21 20 19 23 23 Si 1.86302 * 109.47451 * 210.00032 * 21 20 19 24 24 C 1.34504 * 109.00890 * 0.02562 * 20 19 14 25 25 C 1.53783 * 87.17588 * 334.52586 * 8 7 5 26 26 C 1.38162 * 119.94558 * 180.23023 * 4 3 2 27 27 C 1.38246 * 120.05640 * 359.52427 * 26 4 3 28 28 C 1.38285 * 120.10808 * 0.45748 * 27 26 4 29 29 C 1.38127 * 120.05741 * 359.79441 * 28 27 26 30 30 H 1.09003 * 109.46837 * 300.00058 * 1 2 3 31 31 H 1.09005 * 109.47183 * 59.99501 * 1 2 3 32 32 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.08994 * 113.61747 * 25.43668 * 7 5 4 34 34 H 1.09001 * 113.61161 * 254.52384 * 7 5 4 35 35 H 0.97005 * 119.99473 * 336.53036 * 10 8 7 36 36 H 1.08998 * 109.70644 * 284.26168 * 15 14 13 37 37 H 1.08999 * 109.70738 * 44.88355 * 15 14 13 38 38 H 1.08998 * 109.53618 * 168.35741 * 16 15 14 39 39 H 1.08994 * 109.54048 * 288.61606 * 16 15 14 40 40 H 1.08999 * 109.45981 * 50.44017 * 17 16 15 41 41 H 1.08991 * 109.46326 * 170.41795 * 17 16 15 42 42 H 1.08999 * 109.55853 * 291.14572 * 18 17 16 43 43 H 1.09004 * 109.56942 * 170.80916 * 18 17 16 44 44 H 1.08999 * 109.47296 * 89.99719 * 21 20 19 45 45 H 0.96704 * 113.99492 * 299.99412 * 22 21 20 46 46 H 1.48497 * 110.00009 * 58.67995 * 23 21 20 47 47 H 1.48504 * 109.99765 * 179.97438 * 23 21 20 48 48 H 1.08002 * 126.81398 * 179.97438 * 24 20 19 49 49 H 1.08997 * 113.61397 * 140.02140 * 25 8 7 50 50 H 1.08997 * 113.61112 * 270.92611 * 25 8 7 51 51 H 1.07999 * 119.97486 * 179.74873 * 26 4 3 52 52 H 1.07994 * 119.94651 * 180.20681 * 27 26 4 53 53 H 1.08003 * 119.97673 * 179.77073 * 28 27 26 54 54 H 1.08000 * 120.02954 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4311 1.2847 0.0005 5 6 4.2537 0.0220 0.0020 6 1 3.6591 -0.8703 0.1976 7 6 5.1807 -0.1107 -1.2179 8 6 6.2406 -0.6679 -0.2530 9 1 7.2500 -0.3127 -0.4607 10 7 6.1729 -2.1214 -0.0825 11 6 7.2632 -2.8043 0.3191 12 8 8.3032 -2.2139 0.5405 13 6 7.1950 -4.2653 0.4910 14 6 8.2026 -5.0917 0.8916 15 6 9.6137 -4.6900 1.2487 16 6 10.2699 -5.8562 1.9986 17 6 10.0285 -7.1514 1.2176 18 6 8.5464 -7.5281 1.2965 19 7 7.7370 -6.3608 0.9172 20 6 6.4255 -6.3819 0.5419 21 6 5.5617 -7.6132 0.4486 22 8 6.3747 -8.7414 0.1192 23 14 4.2729 -7.3690 -0.8743 24 6 6.0277 -5.1265 0.2687 25 6 5.5286 0.1169 0.8615 26 6 4.0560 2.5169 0.0053 27 6 3.3021 3.6757 -0.0003 28 6 1.9210 3.6047 -0.0012 29 6 1.2915 2.3752 -0.0008 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 5.4555 0.8453 -1.6635 34 1 4.8341 -0.8374 -1.9526 35 1 5.3433 -2.5922 -0.2588 36 1 10.1757 -4.4745 0.3400 37 1 9.5940 -3.8069 1.8874 38 1 11.3415 -5.6770 2.0852 39 1 9.8319 -5.9429 2.9929 40 1 10.3109 -7.0048 0.1751 41 1 10.6299 -7.9522 1.6476 42 1 8.2997 -7.8276 2.3151 43 1 8.3421 -8.3519 0.6125 44 1 5.0710 -7.7863 1.4063 45 1 6.8425 -8.6566 -0.7229 46 1 4.9290 -7.1006 -2.1792 47 1 3.4149 -8.5768 -0.9767 48 1 5.0454 -4.8146 -0.0542 49 1 5.4627 -0.4262 1.8043 50 1 5.8983 1.1350 0.9833 51 1 5.1344 2.5750 0.0099 52 1 3.7924 4.6379 0.0001 53 1 1.3341 4.5113 -0.0019 54 1 0.2129 2.3203 -0.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_16915396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:36 Heat of formation + Delta-G solvation = -4.415241 kcal Electronic energy + Delta-G solvation = -35565.387025 eV Core-core repulsion = 31049.377613 eV Total energy + Delta-G solvation = -4516.009412 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.79464 -41.60765 -40.53760 -39.12476 -38.11018 -37.93092 -36.90382 -34.43516 -33.47031 -31.81586 -31.15321 -31.00076 -29.46547 -28.08622 -26.73346 -26.61661 -26.00248 -24.67548 -24.10021 -22.99759 -22.45591 -21.76132 -21.19521 -20.11579 -19.47523 -19.09437 -18.82691 -17.60132 -17.25148 -16.92834 -16.75374 -16.59356 -16.59011 -16.43161 -16.15341 -15.76690 -15.43451 -15.34500 -15.30318 -15.12975 -15.01675 -14.91875 -14.63884 -14.49282 -14.36630 -14.15366 -13.91545 -13.84313 -13.39774 -13.20461 -13.05405 -12.93421 -12.80992 -12.68640 -12.39020 -12.22904 -12.17463 -12.00798 -11.96101 -11.82949 -11.76273 -11.67660 -11.56673 -11.07998 -10.89241 -10.84602 -10.03367 -9.71722 -9.54450 -9.04673 -9.01714 -4.90018 0.39229 0.53549 0.72490 1.05735 1.44142 1.67806 1.78482 2.03043 2.40537 2.44511 2.55106 2.81034 3.18363 3.46964 3.55975 3.56786 3.68380 3.73927 3.77562 3.81192 3.81697 3.97429 4.06947 4.17075 4.17317 4.24529 4.30801 4.36299 4.38597 4.39501 4.43015 4.51264 4.51974 4.54385 4.63122 4.71232 4.74793 4.76716 4.77760 4.79955 4.82416 4.85114 4.91284 4.97391 4.99856 5.04084 5.08751 5.15425 5.16347 5.19357 5.28961 5.45751 5.57206 5.64988 5.72909 5.76729 5.90485 6.02641 6.21855 6.33829 6.50142 6.70871 7.38914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.114 3.886 4 C -0.115 4.115 5 C -0.055 4.055 6 H 0.102 0.898 7 C -0.124 4.124 8 C 0.120 3.880 9 H 0.086 0.914 10 N -0.697 5.697 11 C 0.591 3.409 12 O -0.588 6.588 13 C -0.256 4.256 14 C 0.103 3.897 15 C -0.053 4.053 16 C -0.124 4.124 17 C -0.134 4.134 18 C 0.095 3.905 19 N -0.428 5.428 20 C -0.018 4.018 21 C -0.054 4.054 22 O -0.544 6.544 23 Si 0.798 3.202 24 C -0.161 4.161 25 C -0.141 4.141 26 C -0.087 4.087 27 C -0.164 4.164 28 C -0.094 4.094 29 C -0.217 4.217 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.130 0.870 45 H 0.385 0.615 46 H -0.291 1.291 47 H -0.294 1.294 48 H 0.182 0.818 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.141 0.859 52 H 0.138 0.862 53 H 0.139 0.861 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -1.223 -0.555 4.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.069 3.931 4 C -0.116 4.116 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.162 4.162 8 C 0.015 3.985 9 H 0.104 0.896 10 N -0.348 5.348 11 C 0.382 3.618 12 O -0.470 6.470 13 C -0.266 4.266 14 C -0.016 4.016 15 C -0.091 4.091 16 C -0.162 4.162 17 C -0.171 4.171 18 C -0.024 4.024 19 N -0.104 5.104 20 C -0.126 4.126 21 C -0.162 4.162 22 O -0.352 6.352 23 Si 0.701 3.299 24 C -0.184 4.184 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.182 4.182 28 C -0.112 4.112 29 C -0.236 4.236 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.250 0.750 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.148 0.852 45 H 0.235 0.765 46 H -0.217 1.217 47 H -0.222 1.222 48 H 0.199 0.801 49 H 0.080 0.920 50 H 0.116 0.884 51 H 0.159 0.841 52 H 0.156 0.844 53 H 0.157 0.843 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.830 -1.849 -0.499 4.282 hybrid contribution 0.387 -0.356 -0.265 0.589 sum -3.443 -2.205 -0.765 4.160 Atomic orbital electron populations 1.23284 0.76948 1.05439 1.01797 1.86023 1.22811 1.26644 1.88641 1.19081 0.92229 0.84769 0.97065 1.19255 0.90360 0.95973 1.05995 1.21369 0.93567 0.95419 0.96967 0.87987 1.23363 0.94313 1.02363 0.96125 1.21779 0.99671 0.79938 0.97143 0.89605 1.45327 1.13713 1.07076 1.68678 1.17553 0.82906 0.86100 0.75248 1.90733 1.31554 1.71220 1.53526 1.19962 0.96028 0.92093 1.18479 1.20568 0.96451 0.83747 1.00834 1.20428 0.88491 0.98963 1.01208 1.21700 1.02204 0.93522 0.98778 1.21924 0.94168 0.99038 1.01978 1.22441 0.90621 0.86486 1.02891 1.44037 1.09488 1.06488 1.50417 1.20956 0.85380 0.97430 1.08872 1.25028 0.97905 0.81988 1.11326 1.86567 1.63643 1.41008 1.43943 0.93471 0.78086 0.84195 0.74148 1.21996 0.98785 0.90355 1.07285 1.23607 0.95517 1.01246 0.97630 1.21096 1.00800 0.90973 0.97632 1.21343 0.94186 0.99168 1.03536 1.21248 0.95133 0.97612 0.97228 1.21488 1.00895 0.92431 1.08770 0.92291 0.92123 0.86364 0.88051 0.89831 0.75033 0.90178 0.90126 0.89246 0.91558 0.91028 0.87464 0.89768 0.86919 0.85238 0.76491 1.21706 1.22181 0.80114 0.91954 0.88387 0.84084 0.84434 0.84298 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.81 9.43 -92.40 -0.87 -1.68 16 3 C 0.11 0.44 6.66 22.50 0.15 0.59 16 4 C -0.12 -0.35 5.30 -19.77 -0.10 -0.45 16 5 C -0.05 -0.04 3.76 -10.92 -0.04 -0.08 16 6 H 0.10 0.09 7.33 -2.39 -0.02 0.07 16 7 C -0.12 0.11 7.29 31.12 0.23 0.34 16 8 C 0.12 0.31 4.30 45.52 0.20 0.51 16 9 H 0.09 0.55 7.50 -2.39 -0.02 0.53 16 10 N -0.70 -2.07 5.26 -443.44 -2.33 -4.40 16 11 C 0.59 5.54 7.81 86.62 0.68 6.21 16 12 O -0.59 -9.65 14.96 -4.12 -0.06 -9.71 16 13 C -0.26 -1.72 6.28 -19.12 -0.12 -1.84 16 14 C 0.10 0.65 6.57 41.69 0.27 0.92 16 15 C -0.05 -0.27 5.31 30.08 0.16 -0.11 16 16 C -0.12 0.08 5.98 30.78 0.18 0.26 16 17 C -0.13 0.46 5.92 30.69 0.18 0.64 16 18 C 0.10 -0.19 6.21 86.32 0.54 0.35 16 19 N -0.43 -1.03 3.11 -493.61 -1.54 -2.56 16 20 C -0.02 -0.01 6.15 40.99 0.25 0.24 16 21 C -0.05 0.15 3.00 71.23 0.21 0.37 16 22 O -0.54 0.89 10.28 -148.98 -1.53 -0.64 16 23 Si 0.80 -3.33 31.11 68.60 2.13 -1.20 16 24 C -0.16 -0.09 9.09 23.64 0.21 0.12 16 25 C -0.14 -0.26 7.27 31.21 0.23 -0.03 16 26 C -0.09 -0.13 8.62 22.25 0.19 0.06 16 27 C -0.16 -0.19 10.04 22.28 0.22 0.04 16 28 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 29 C -0.22 -0.45 9.04 22.37 0.20 -0.25 16 30 H 0.06 -0.29 7.66 -2.39 -0.02 -0.31 16 31 H 0.06 -0.32 7.66 -2.38 -0.02 -0.33 16 32 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.10 -0.18 7.73 -2.39 -0.02 -0.20 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.41 -0.95 7.83 -92.70 -0.73 -1.67 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.71 7.42 -2.39 -0.02 0.69 16 38 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.07 0.00 8.12 -2.39 -0.02 -0.02 16 40 H 0.07 -0.18 8.11 -2.39 -0.02 -0.20 16 41 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.08 -0.18 8.14 -2.39 -0.02 -0.19 16 43 H 0.11 -0.46 5.68 -2.38 -0.01 -0.47 16 44 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 45 H 0.39 -2.32 8.27 -74.05 -0.61 -2.93 16 46 H -0.29 -0.48 7.11 99.48 0.71 0.22 16 47 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 48 H 0.18 -1.23 6.52 -2.91 -0.02 -1.25 16 49 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.10 0.05 6.31 -2.39 -0.02 0.04 16 51 H 0.14 -0.24 6.64 -2.91 -0.02 -0.26 16 52 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 53 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 54 H 0.14 -0.23 6.30 -2.91 -0.02 -0.25 16 Total: 0.00 -21.20 422.97 0.62 -20.58 By element: Atomic # 1 Polarization: -9.07 SS G_CDS: -0.36 Total: -9.43 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.18 Total: 9.04 kcal Atomic # 7 Polarization: -3.09 SS G_CDS: -3.87 Total: -6.96 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -2.47 Total: -12.03 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.13 Total: -1.20 kcal Total: -21.20 0.62 -20.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_16915396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal (2) G-P(sol) polarization free energy of solvation -21.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds