Wall clock time and date at job start Sun Mar 7 2021 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00022 * 2 1 4 4 C 1.38711 * 120.05518 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.02988 * 0.02562 * 4 3 2 6 6 H 1.08999 * 112.90538 * 348.46812 * 5 4 3 7 7 C 1.53772 * 113.61582 * 119.71946 * 5 4 3 8 8 C 1.53784 * 87.08417 * 139.98434 * 7 5 4 9 9 H 1.08998 * 113.61363 * 219.93714 * 8 7 5 10 10 N 1.46501 * 113.61539 * 89.11085 * 8 7 5 11 11 C 1.34773 * 119.99557 * 156.53125 * 10 8 7 12 12 O 1.21278 * 120.00306 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99605 * 180.02562 * 11 10 8 14 14 O 1.42904 * 109.47031 * 180.02562 * 13 11 10 15 15 C 1.35895 * 117.00128 * 179.97438 * 14 13 11 16 16 C 1.38709 * 120.05826 * 180.02562 * 15 14 13 17 17 C 1.50705 * 120.02708 * 0.02562 * 16 15 14 18 18 O 1.42905 * 109.46508 * 284.97626 * 17 16 15 19 19 Si 1.86298 * 109.47262 * 164.97774 * 17 16 15 20 20 C 1.38164 * 119.94688 * 179.97438 * 16 15 14 21 21 C 1.38245 * 120.05645 * 0.02562 * 20 16 15 22 22 C 1.38290 * 120.10982 * 359.97438 * 21 20 16 23 23 C 1.38126 * 120.05768 * 0.02562 * 22 21 20 24 24 C 1.53782 * 87.16883 * 334.52379 * 8 7 5 25 25 C 1.38161 * 119.94506 * 179.72726 * 4 3 2 26 26 C 1.38242 * 120.05524 * 0.27686 * 25 4 3 27 27 C 1.38286 * 120.11059 * 359.97438 * 26 25 4 28 28 C 1.38112 * 120.05692 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46751 * 299.99785 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.99654 * 1 2 3 32 32 H 1.08996 * 113.61724 * 25.43044 * 7 5 4 33 33 H 1.09001 * 113.61533 * 254.53031 * 7 5 4 34 34 H 0.97002 * 120.00119 * 336.53512 * 10 8 7 35 35 H 1.09000 * 109.47423 * 60.00375 * 13 11 10 36 36 H 1.09002 * 109.47439 * 299.99751 * 13 11 10 37 37 H 1.08992 * 109.47373 * 44.97197 * 17 16 15 38 38 H 0.96696 * 114.00353 * 59.99848 * 18 17 16 39 39 H 1.48499 * 109.99689 * 299.99780 * 19 17 16 40 40 H 1.48501 * 109.99933 * 61.31379 * 19 17 16 41 41 H 1.07997 * 119.97418 * 180.02562 * 20 16 15 42 42 H 1.07995 * 119.94685 * 179.72562 * 21 20 16 43 43 H 1.07995 * 119.97112 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.03128 * 180.02562 * 23 22 21 45 45 H 1.09001 * 113.61750 * 140.02048 * 24 8 7 46 46 H 1.08998 * 113.61950 * 270.92727 * 24 8 7 47 47 H 1.08004 * 119.97625 * 180.26043 * 25 4 3 48 48 H 1.08004 * 119.94725 * 180.02562 * 26 25 4 49 49 H 1.08001 * 119.97201 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.03046 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2538 0.0221 0.0005 6 1 3.6610 -0.8704 0.2008 7 6 5.1758 -0.1125 -1.2228 8 6 6.2397 -0.6682 -0.2614 9 1 7.2481 -0.3132 -0.4739 10 7 6.1726 -2.1214 -0.0885 11 6 7.2646 -2.8037 0.3097 12 8 8.3026 -2.2146 0.5253 13 6 7.1958 -4.2986 0.4871 14 8 8.4698 -4.7870 0.9118 15 6 8.5795 -6.1255 1.1196 16 6 9.7873 -6.6678 1.5333 17 6 10.9797 -5.7728 1.7534 18 8 11.5176 -5.3769 0.4900 19 14 12.2783 -6.6950 2.7198 20 6 9.8961 -8.0288 1.7444 21 6 8.8025 -8.8503 1.5432 22 6 7.5972 -8.3122 1.1308 23 6 7.4833 -6.9521 0.9183 24 6 5.5322 0.1183 0.8547 25 6 4.0560 2.5170 -0.0052 26 6 3.3020 3.6757 -0.0056 27 6 1.9210 3.6047 -0.0009 28 6 1.2915 2.3753 0.0037 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 5.4486 0.8428 -1.6711 33 1 4.8262 -0.8403 -1.9550 34 1 5.3424 -2.5925 -0.2606 35 1 6.9250 -4.7649 -0.4602 36 1 6.4450 -4.5412 1.2392 37 1 10.6721 -4.8881 2.3106 38 1 10.8950 -4.8907 -0.0676 39 1 11.7312 -7.1123 4.0357 40 1 12.7292 -7.8863 1.9563 41 1 10.8361 -8.4514 2.0669 42 1 8.8907 -9.9145 1.7045 43 1 6.7442 -8.9559 0.9747 44 1 6.5417 -6.5323 0.5967 45 1 5.4701 -0.4233 1.7986 46 1 5.9023 1.1366 0.9735 47 1 5.1345 2.5751 -0.0090 48 1 3.7923 4.6380 -0.0105 49 1 1.3341 4.5113 -0.0017 50 1 0.2129 2.3204 0.0070 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_2989392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:40 Heat of formation + Delta-G solvation = -49.999438 kcal Electronic energy + Delta-G solvation = -32493.388940 eV Core-core repulsion = 28033.221806 eV Total energy + Delta-G solvation = -4460.167134 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.91042 -41.55081 -40.76522 -39.49813 -38.49387 -38.00003 -37.50568 -34.74091 -32.85460 -32.06001 -31.31228 -31.05895 -29.45290 -28.14039 -26.71068 -26.70726 -26.08443 -23.95416 -23.12204 -22.70049 -22.59601 -21.85491 -20.18465 -19.51428 -19.11381 -18.43510 -18.26589 -17.57935 -17.50523 -17.24332 -16.77487 -16.71556 -16.67522 -16.63432 -15.84679 -15.73384 -15.57205 -15.36768 -15.27211 -15.06588 -15.03711 -14.69300 -14.32549 -14.17027 -14.01207 -13.72682 -13.59080 -13.45088 -13.14492 -13.00546 -12.82980 -12.77527 -12.67908 -12.31723 -12.28210 -12.19814 -12.03154 -11.78038 -11.66247 -11.27319 -11.17945 -11.09798 -11.02373 -10.19521 -10.10884 -9.77244 -9.36878 -9.08298 -4.84952 0.08283 0.24577 0.33543 0.47812 1.32910 1.37142 1.38682 1.59510 1.88261 2.36932 2.48450 2.55642 2.75116 3.42916 3.45678 3.53202 3.65882 3.67246 3.69096 3.87291 3.90783 3.92539 3.97790 3.99644 4.03182 4.09867 4.16294 4.18689 4.18939 4.31576 4.35897 4.37908 4.44989 4.48031 4.53444 4.62462 4.69388 4.72778 4.77977 4.81459 4.82291 4.92929 4.99627 5.09315 5.11778 5.14899 5.22809 5.36685 5.39537 5.43281 5.56663 5.58920 5.64912 5.84468 6.13859 6.39708 6.43020 6.52006 7.07131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.117 4.117 5 C -0.056 4.056 6 H 0.102 0.898 7 C -0.122 4.122 8 C 0.120 3.880 9 H 0.088 0.912 10 N -0.693 5.693 11 C 0.517 3.483 12 O -0.565 6.565 13 C 0.037 3.963 14 O -0.312 6.312 15 C 0.127 3.873 16 C -0.164 4.164 17 C -0.090 4.090 18 O -0.547 6.547 19 Si 0.812 3.188 20 C -0.104 4.104 21 C -0.156 4.156 22 C -0.075 4.075 23 C -0.203 4.203 24 C -0.142 4.142 25 C -0.087 4.087 26 C -0.164 4.164 27 C -0.094 4.094 28 C -0.218 4.218 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.419 0.581 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.370 0.630 39 H -0.265 1.265 40 H -0.280 1.280 41 H 0.124 0.876 42 H 0.146 0.854 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 0.061 -1.229 8.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.075 4.075 6 H 0.120 0.880 7 C -0.160 4.160 8 C 0.014 3.986 9 H 0.107 0.893 10 N -0.347 5.347 11 C 0.303 3.697 12 O -0.443 6.443 13 C -0.041 4.041 14 O -0.225 6.225 15 C 0.081 3.919 16 C -0.166 4.166 17 C -0.197 4.197 18 O -0.353 6.353 19 Si 0.712 3.288 20 C -0.121 4.121 21 C -0.174 4.174 22 C -0.093 4.093 23 C -0.221 4.221 24 C -0.181 4.181 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.112 4.112 28 C -0.236 4.236 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.257 0.743 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.218 0.782 39 H -0.191 1.191 40 H -0.207 1.207 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.177 0.823 44 H 0.181 0.819 45 H 0.083 0.917 46 H 0.117 0.883 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.657 -0.590 -0.453 6.699 hybrid contribution -2.456 0.210 -0.704 2.564 sum -9.114 -0.381 -1.157 9.195 Atomic orbital electron populations 1.23277 0.76941 1.05354 1.01886 1.86007 1.22826 1.26760 1.88710 1.19085 0.92276 0.84696 0.97169 1.19250 0.90294 0.96033 1.06148 1.21392 0.93597 0.95410 0.97068 0.87978 1.23365 0.94047 1.02551 0.96074 1.21826 0.99965 0.79472 0.97324 0.89346 1.45367 1.13405 1.07492 1.68411 1.20431 0.83579 0.89305 0.76349 1.90770 1.31585 1.71246 1.50658 1.22734 0.85689 0.91216 1.04419 1.86072 1.33925 1.19881 1.82613 1.18923 0.94144 0.82339 0.96470 1.19861 0.94880 0.94992 1.06820 1.25474 1.01581 1.01469 0.91171 1.86635 1.42447 1.77504 1.28729 0.92301 0.83794 0.77578 0.75086 1.21020 0.99599 0.92244 0.99260 1.21392 0.92909 1.01071 1.01989 1.21419 0.98156 0.94698 0.94987 1.21670 0.98785 0.94839 1.06811 1.23623 0.95382 1.01438 0.97649 1.21104 1.00835 0.90945 0.97572 1.21360 0.94166 0.99257 1.03395 1.21254 0.95177 0.97610 0.97110 1.21493 1.00912 0.92482 1.08749 0.86515 0.92231 0.92062 0.87974 0.89555 0.74312 0.85642 0.85978 0.91384 0.78239 1.19105 1.20728 0.85823 0.83591 0.82279 0.81853 0.91662 0.88321 0.83964 0.84373 0.84283 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.46 9.43 -92.41 -0.87 -1.33 16 3 C 0.11 0.30 6.66 22.51 0.15 0.45 16 4 C -0.12 -0.16 5.30 -19.77 -0.10 -0.26 16 5 C -0.06 0.11 3.76 -10.92 -0.04 0.07 16 6 H 0.10 -0.21 7.33 -2.39 -0.02 -0.22 16 7 C -0.12 0.50 7.29 31.12 0.23 0.72 16 8 C 0.12 -0.16 4.30 45.52 0.20 0.03 16 9 H 0.09 0.26 7.50 -2.39 -0.02 0.24 16 10 N -0.69 2.49 5.26 -440.04 -2.32 0.17 16 11 C 0.52 1.22 7.91 87.66 0.69 1.92 16 12 O -0.56 -7.48 16.12 16.01 0.26 -7.23 16 13 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 14 O -0.31 -1.70 8.58 -73.33 -0.63 -2.32 16 15 C 0.13 0.65 6.62 22.51 0.15 0.79 16 16 C -0.16 -1.35 5.28 -19.77 -0.10 -1.45 16 17 C -0.09 -0.76 2.33 71.24 0.17 -0.59 16 18 O -0.55 -5.74 12.65 -148.98 -1.89 -7.62 16 19 Si 0.81 3.73 30.40 68.60 2.09 5.82 16 20 C -0.10 -0.70 8.66 22.25 0.19 -0.50 16 21 C -0.16 -0.34 10.04 22.28 0.22 -0.12 16 22 C -0.07 0.08 10.04 22.26 0.22 0.30 16 23 C -0.20 0.15 9.04 22.37 0.20 0.35 16 24 C -0.14 0.17 7.27 31.21 0.23 0.40 16 25 C -0.09 0.00 8.61 22.25 0.19 0.19 16 26 C -0.16 -0.01 10.04 22.28 0.22 0.22 16 27 C -0.09 -0.03 10.04 22.25 0.22 0.20 16 28 C -0.22 -0.25 9.04 22.36 0.20 -0.05 16 29 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.06 -0.33 7.65 -2.39 -0.02 -0.35 16 31 H 0.06 -0.36 7.67 -2.39 -0.02 -0.38 16 32 H 0.10 -0.44 7.72 -2.39 -0.02 -0.45 16 33 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.42 -4.24 8.70 -92.71 -0.81 -5.05 16 35 H 0.13 -1.17 7.66 -2.39 -0.02 -1.19 16 36 H 0.12 -1.07 7.66 -2.39 -0.02 -1.09 16 37 H 0.07 0.62 7.83 -2.39 -0.02 0.60 16 38 H 0.37 3.07 8.61 -74.06 -0.64 2.43 16 39 H -0.27 -1.78 7.11 99.48 0.71 -1.07 16 40 H -0.28 -2.48 6.81 99.48 0.68 -1.81 16 41 H 0.12 0.80 4.94 -2.91 -0.01 0.78 16 42 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 43 H 0.16 -1.14 8.06 -2.91 -0.02 -1.17 16 44 H 0.16 -1.33 6.30 -2.91 -0.02 -1.35 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.10 -0.18 6.32 -2.39 -0.02 -0.19 16 47 H 0.14 -0.48 6.66 -2.91 -0.02 -0.50 16 48 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 49 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 50 H 0.14 -0.33 6.30 -2.91 -0.02 -0.35 16 Total: 0.00 -23.45 409.13 0.92 -22.53 By element: Atomic # 1 Polarization: -13.51 SS G_CDS: -0.44 Total: -13.96 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.72 Total: 3.94 kcal Atomic # 7 Polarization: 2.49 SS G_CDS: -2.32 Total: 0.17 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -3.13 Total: -18.50 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.09 Total: 5.82 kcal Total: -23.45 0.92 -22.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_2989392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.471 kcal (2) G-P(sol) polarization free energy of solvation -23.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds