Wall clock time and date at job start Sun Mar 7 2021 05:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00370 * 2 1 4 4 C 1.38708 * 120.05751 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.02761 * 0.02562 * 4 3 2 6 6 H 1.08993 * 112.85194 * 11.18964 * 5 4 3 7 7 C 1.53784 * 113.61392 * 142.50291 * 5 4 3 8 8 C 1.53780 * 87.07907 * 139.97698 * 7 5 4 9 9 H 1.09007 * 113.61766 * 220.01500 * 8 7 5 10 10 N 1.46498 * 113.61324 * 89.11533 * 8 7 5 11 11 C 1.34774 * 120.00013 * 107.50411 * 10 8 7 12 12 O 1.21284 * 120.00329 * 359.97438 * 11 10 8 13 13 C 1.50706 * 120.00371 * 179.97438 * 11 10 8 14 14 O 1.42902 * 109.47476 * 179.97438 * 13 11 10 15 15 C 1.35896 * 116.99962 * 179.97438 * 14 13 11 16 16 C 1.38732 * 120.05447 * 359.73084 * 15 14 13 17 17 C 1.38149 * 119.94192 * 179.69870 * 16 15 14 18 18 C 1.38264 * 120.05336 * 0.59270 * 17 16 15 19 19 C 1.50705 * 119.94390 * 179.70144 * 18 17 16 20 20 O 1.42899 * 109.47226 * 119.97810 * 19 18 17 21 21 Si 1.86295 * 109.46965 * 359.97438 * 19 18 17 22 22 C 1.38269 * 120.11364 * 359.68096 * 18 17 16 23 23 C 1.38146 * 120.05388 * 0.02562 * 22 18 17 24 24 C 1.53776 * 87.08384 * 334.56650 * 8 7 5 25 25 C 1.38171 * 119.94045 * 180.02562 * 4 3 2 26 26 C 1.38240 * 120.06065 * 359.97438 * 25 4 3 27 27 C 1.38295 * 120.10794 * 0.02562 * 26 25 4 28 28 C 1.38119 * 120.05704 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47181 * 300.00095 * 1 2 3 31 31 H 1.08998 * 109.47333 * 59.99666 * 1 2 3 32 32 H 1.09000 * 113.61061 * 254.52656 * 7 5 4 33 33 H 1.08999 * 113.61370 * 25.42881 * 7 5 4 34 34 H 0.96997 * 120.00573 * 287.49937 * 10 8 7 35 35 H 1.08999 * 109.47154 * 300.00227 * 13 11 10 36 36 H 1.09002 * 109.46962 * 59.99494 * 13 11 10 37 37 H 1.07994 * 120.03270 * 359.97438 * 16 15 14 38 38 H 1.08000 * 119.97303 * 180.31941 * 17 16 15 39 39 H 1.09001 * 109.46941 * 239.97881 * 19 18 17 40 40 H 0.96705 * 114.00118 * 300.00388 * 20 19 18 41 41 H 1.48501 * 110.00151 * 58.68043 * 21 19 18 42 42 H 1.48502 * 109.99919 * 180.02562 * 21 19 18 43 43 H 1.07999 * 119.97226 * 180.02562 * 22 18 17 44 44 H 1.07997 * 120.02239 * 180.02562 * 23 22 18 45 45 H 1.09001 * 113.61550 * 270.88476 * 24 8 7 46 46 H 1.09002 * 113.61839 * 139.98363 * 24 8 7 47 47 H 1.08005 * 119.97011 * 180.02562 * 25 4 3 48 48 H 1.07995 * 119.94494 * 180.27435 * 26 25 4 49 49 H 1.07997 * 119.96986 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.02616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4311 1.2847 -0.0005 5 6 4.2537 0.0221 -0.0017 6 1 3.6590 -0.8703 -0.1969 7 6 5.5262 0.1167 -0.8599 8 6 6.2406 -0.6676 0.2534 9 1 7.2498 -0.3112 0.4601 10 7 6.1729 -2.1212 0.0834 11 6 7.2713 -2.8081 -0.2882 12 8 8.3157 -2.2229 -0.4823 13 6 7.2019 -4.3034 -0.4625 14 8 8.4835 -4.7971 -0.8571 15 6 8.5938 -6.1367 -1.0573 16 6 7.4925 -6.9598 -0.8721 17 6 7.6057 -8.3205 -1.0823 18 6 8.8182 -8.8637 -1.4649 19 6 8.9405 -10.3492 -1.6870 20 8 9.3396 -10.5979 -3.0364 21 14 7.2955 -11.1626 -1.3658 22 6 9.9187 -8.0461 -1.6446 23 6 9.8093 -6.6840 -1.4416 24 6 5.1808 -0.1102 1.2181 25 6 4.0560 2.5171 0.0000 26 6 3.3020 3.6758 0.0005 27 6 1.9209 3.6047 0.0011 28 6 1.2914 2.3753 0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 5.4586 -0.4266 -1.8024 33 1 5.8954 1.1349 -0.9826 34 1 5.3376 -2.5893 0.2383 35 1 6.9084 -4.7658 0.4799 36 1 6.4673 -4.5459 -1.2304 37 1 6.5465 -6.5368 -0.5683 38 1 6.7473 -8.9612 -0.9433 39 1 9.6871 -10.7581 -1.0061 40 1 8.7205 -10.2605 -3.6982 41 1 6.2620 -10.5911 -2.2661 42 1 7.4030 -12.6280 -1.5808 43 1 10.8647 -8.4727 -1.9439 44 1 10.6691 -6.0459 -1.5825 45 1 5.4555 0.8459 1.6635 46 1 4.8342 -0.8367 1.9532 47 1 5.1344 2.5752 -0.0008 48 1 3.7923 4.6380 -0.0035 49 1 1.3340 4.5113 0.0019 50 1 0.2128 2.3204 0.0024 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_2989410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:44 Heat of formation + Delta-G solvation = -49.517552 kcal Electronic energy + Delta-G solvation = -31757.799090 eV Core-core repulsion = 27297.652852 eV Total energy + Delta-G solvation = -4460.146238 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.84871 -41.40407 -40.71043 -39.56966 -38.86305 -38.02244 -37.22474 -34.72555 -32.45834 -31.95382 -31.69648 -31.04720 -29.56392 -28.12646 -26.69075 -26.37544 -25.92153 -24.09011 -23.18277 -22.69546 -22.36853 -21.79691 -20.15957 -19.51456 -19.08744 -18.45763 -18.19583 -17.48674 -17.35304 -17.08230 -16.80132 -16.65955 -16.63404 -16.31869 -16.12951 -15.64622 -15.56322 -15.34946 -15.29750 -15.06889 -14.75128 -14.60761 -14.37010 -14.30702 -14.02406 -13.74199 -13.57317 -13.48006 -13.40344 -13.12465 -12.98993 -12.75482 -12.30783 -12.28046 -12.13859 -12.05980 -12.01561 -11.75861 -11.65512 -11.61739 -11.16610 -11.02953 -10.58647 -10.17763 -10.03202 -9.76002 -9.23107 -9.06945 -4.90150 0.27732 0.31429 0.34673 0.48995 1.34513 1.41281 1.45782 1.62209 1.99195 2.38483 2.57875 2.65490 2.76275 3.44233 3.47445 3.50279 3.67374 3.69927 3.74483 3.82920 3.92396 3.95086 4.00030 4.03659 4.09588 4.11895 4.19941 4.31460 4.33221 4.37682 4.43101 4.46262 4.49332 4.56640 4.63830 4.69799 4.71152 4.74543 4.79470 4.84263 4.94712 4.97941 5.01464 5.10505 5.16404 5.16751 5.26111 5.40835 5.45273 5.49843 5.59347 5.65895 5.70599 5.85595 6.26108 6.44473 6.45259 6.51061 7.10581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.056 4.056 6 H 0.104 0.896 7 C -0.143 4.143 8 C 0.118 3.882 9 H 0.087 0.913 10 N -0.692 5.692 11 C 0.515 3.485 12 O -0.571 6.571 13 C 0.037 3.963 14 O -0.320 6.320 15 C 0.121 3.879 16 C -0.200 4.200 17 C -0.075 4.075 18 C -0.159 4.159 19 C -0.082 4.082 20 O -0.552 6.552 21 Si 0.772 3.228 22 C -0.060 4.060 23 C -0.166 4.166 24 C -0.123 4.123 25 C -0.087 4.087 26 C -0.164 4.164 27 C -0.094 4.094 28 C -0.218 4.218 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.420 0.580 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.385 0.615 41 H -0.279 1.279 42 H -0.307 1.307 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 0.399 3.912 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.075 4.075 6 H 0.122 0.878 7 C -0.181 4.181 8 C 0.012 3.988 9 H 0.105 0.895 10 N -0.346 5.346 11 C 0.302 3.698 12 O -0.450 6.450 13 C -0.041 4.041 14 O -0.233 6.233 15 C 0.076 3.924 16 C -0.218 4.218 17 C -0.093 4.093 18 C -0.159 4.159 19 C -0.191 4.191 20 O -0.360 6.360 21 Si 0.677 3.323 22 C -0.078 4.078 23 C -0.185 4.185 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.112 4.112 28 C -0.236 4.236 29 H 0.135 0.865 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.258 0.742 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.235 0.765 41 H -0.205 1.205 42 H -0.236 1.236 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.255 0.029 3.731 9.059 hybrid contribution -0.338 0.494 -1.312 1.442 sum -8.593 0.524 2.419 8.942 Atomic orbital electron populations 1.23277 0.76938 1.05380 1.01866 1.86006 1.22821 1.26721 1.88694 1.19081 0.92261 0.84702 0.97130 1.19246 0.90297 0.96010 1.06104 1.21351 0.93593 0.95470 0.97051 0.87822 1.23580 0.95419 1.01428 0.97695 1.21829 0.99932 0.79586 0.97406 0.89476 1.45361 1.12697 1.07381 1.69171 1.20567 0.83564 0.89591 0.76086 1.90764 1.31594 1.71660 1.50932 1.22740 0.85555 0.90775 1.05000 1.86128 1.33270 1.20437 1.83453 1.19221 0.95127 0.81911 0.96186 1.21501 0.98981 0.94159 1.07190 1.21067 0.96938 0.94820 0.96438 1.20296 0.94389 0.96363 1.04880 1.25246 1.13568 0.94586 0.85671 1.86568 1.51678 1.82022 1.15702 0.94140 0.72943 0.75272 0.89950 1.20905 0.99138 0.91657 0.96126 1.20620 0.96637 0.95650 1.05606 1.23373 0.94026 1.02529 0.96116 1.21104 1.00815 0.90974 0.97601 1.21355 0.94175 0.99237 1.03442 1.21254 0.95161 0.97619 0.97140 1.21496 1.00914 0.92477 1.08744 0.86465 0.92061 0.92275 0.91582 0.88380 0.74173 0.85256 0.85737 0.81777 0.82924 0.86078 0.76537 1.20503 1.23598 0.84882 0.85608 0.88055 0.89461 0.84015 0.84431 0.84315 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.36 9.43 -92.43 -0.87 -1.23 16 3 C 0.11 0.28 6.66 22.51 0.15 0.43 16 4 C -0.12 -0.14 5.30 -19.77 -0.10 -0.25 16 5 C -0.06 0.12 3.75 -11.01 -0.04 0.08 16 6 H 0.10 -0.25 7.32 -2.39 -0.02 -0.26 16 7 C -0.14 0.17 7.25 31.12 0.23 0.39 16 8 C 0.12 -0.13 4.32 45.52 0.20 0.07 16 9 H 0.09 0.30 7.47 -2.38 -0.02 0.28 16 10 N -0.69 2.36 5.26 -440.03 -2.32 0.05 16 11 C 0.52 1.54 7.91 87.66 0.69 2.23 16 12 O -0.57 -8.41 16.10 16.00 0.26 -8.15 16 13 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 14 O -0.32 -1.90 9.67 -73.34 -0.71 -2.61 16 15 C 0.12 0.41 6.69 22.51 0.15 0.56 16 16 C -0.20 0.55 9.04 22.37 0.20 0.75 16 17 C -0.08 0.22 8.66 22.25 0.19 0.42 16 18 C -0.16 -0.01 5.39 -19.85 -0.11 -0.12 16 19 C -0.08 0.06 2.82 71.24 0.20 0.26 16 20 O -0.55 -1.64 12.77 -148.98 -1.90 -3.54 16 21 Si 0.77 -2.41 29.78 68.60 2.04 -0.37 16 22 C -0.06 -0.17 9.60 22.26 0.21 0.04 16 23 C -0.17 -0.82 9.99 22.37 0.22 -0.60 16 24 C -0.12 0.49 7.29 31.12 0.23 0.72 16 25 C -0.09 0.00 8.61 22.25 0.19 0.19 16 26 C -0.16 -0.01 10.04 22.28 0.22 0.22 16 27 C -0.09 -0.02 10.04 22.25 0.22 0.20 16 28 C -0.22 -0.22 9.04 22.37 0.20 -0.02 16 29 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.06 -0.38 7.66 -2.39 -0.02 -0.39 16 31 H 0.06 -0.34 7.66 -2.39 -0.02 -0.36 16 32 H 0.07 0.04 8.14 -2.39 -0.02 0.03 16 33 H 0.10 -0.17 6.31 -2.39 -0.02 -0.18 16 34 H 0.42 -4.36 8.70 -92.71 -0.81 -5.16 16 35 H 0.13 -1.31 7.65 -2.39 -0.02 -1.33 16 36 H 0.13 -1.18 7.68 -2.39 -0.02 -1.19 16 37 H 0.16 -1.65 6.30 -2.91 -0.02 -1.67 16 38 H 0.15 -1.23 4.87 -2.91 -0.01 -1.25 16 39 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.39 -1.02 8.70 -74.05 -0.64 -1.66 16 41 H -0.28 0.04 7.11 99.48 0.71 0.74 16 42 H -0.31 -1.63 7.11 99.48 0.71 -0.92 16 43 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 45 H 0.10 -0.42 7.72 -2.39 -0.02 -0.44 16 46 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.14 -0.47 6.66 -2.91 -0.02 -0.49 16 48 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 49 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 50 H 0.14 -0.35 6.30 -2.91 -0.02 -0.37 16 Total: 0.00 -26.39 410.29 0.83 -25.56 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -0.42 Total: -16.53 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 4.75 Total: 6.83 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -2.32 Total: 0.05 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -3.22 Total: -15.53 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.04 Total: -0.37 kcal Total: -26.39 0.83 -25.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_2989410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.959 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds