Wall clock time and date at job start Sun Mar 7 2021 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 116.99816 * 2 1 4 4 C 1.38708 * 120.05541 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.02825 * 0.02562 * 4 3 2 6 6 H 1.09005 * 112.85096 * 348.52140 * 5 4 3 7 7 C 1.53781 * 113.61824 * 119.71786 * 5 4 3 8 8 C 1.53777 * 87.08496 * 139.98135 * 7 5 4 9 9 H 1.08998 * 113.61602 * 219.93998 * 8 7 5 10 10 N 1.46502 * 113.61253 * 89.11668 * 8 7 5 11 11 C 1.34778 * 119.99940 * 155.00444 * 10 8 7 12 12 O 1.21278 * 119.99953 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99985 * 180.02562 * 11 10 8 14 14 C 1.53006 * 109.47172 * 180.02562 * 13 11 10 15 15 O 1.42889 * 109.46965 * 179.97438 * 14 13 11 16 16 C 1.35909 * 116.99987 * 179.97438 * 15 14 13 17 17 C 1.38709 * 120.05571 * 180.29361 * 16 15 14 18 18 C 1.38164 * 119.94087 * 180.25806 * 17 16 15 19 19 C 1.50702 * 119.97513 * 179.74967 * 18 17 16 20 20 O 1.42903 * 109.47007 * 299.72641 * 19 18 17 21 21 Si 1.86300 * 109.47301 * 179.72128 * 19 18 17 22 22 C 1.38248 * 120.05536 * 359.47229 * 18 17 16 23 23 C 1.38287 * 120.11128 * 0.23172 * 22 18 17 24 24 C 1.38118 * 120.05712 * 0.04425 * 23 22 18 25 25 C 1.53779 * 113.61702 * 217.21878 * 5 4 3 26 26 C 1.38171 * 119.94500 * 179.72962 * 4 3 2 27 27 C 1.38241 * 120.05776 * 0.23059 * 26 4 3 28 28 C 1.38297 * 120.10868 * 0.02628 * 27 26 4 29 29 C 1.38124 * 120.05483 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46955 * 59.99037 * 1 2 3 31 31 H 1.08992 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46811 * 299.99576 * 1 2 3 33 33 H 1.09005 * 113.61153 * 25.43611 * 7 5 4 34 34 H 1.08999 * 113.69392 * 254.54551 * 7 5 4 35 35 H 0.96998 * 120.00412 * 334.99817 * 10 8 7 36 36 H 1.08994 * 109.47289 * 59.99428 * 13 11 10 37 37 H 1.09001 * 109.46870 * 299.99606 * 13 11 10 38 38 H 1.08999 * 109.46861 * 59.99832 * 14 13 11 39 39 H 1.09006 * 109.46771 * 300.00057 * 14 13 11 40 40 H 1.07999 * 120.02908 * 359.97438 * 17 16 15 41 41 H 1.09004 * 109.46923 * 59.72209 * 19 18 17 42 42 H 0.96695 * 113.99582 * 179.97438 * 20 19 18 43 43 H 1.48497 * 110.00010 * 298.68061 * 21 19 18 44 44 H 1.48495 * 109.99824 * 60.00286 * 21 19 18 45 45 H 1.07998 * 119.94282 * 180.25558 * 22 18 17 46 46 H 1.08003 * 119.97273 * 180.02562 * 23 22 18 47 47 H 1.08001 * 120.03113 * 179.97438 * 24 23 22 48 48 H 1.08995 * 113.61958 * 105.46968 * 25 5 4 49 49 H 1.09004 * 113.61293 * 334.56481 * 25 5 4 50 50 H 1.07997 * 119.97138 * 180.26183 * 26 4 3 51 51 H 1.07990 * 119.94959 * 179.97438 * 27 26 4 52 52 H 1.08002 * 119.97057 * 179.97438 * 28 27 26 53 53 H 1.07995 * 120.02759 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 0.0005 5 6 4.2537 0.0223 0.0005 6 1 3.6599 -0.8698 0.2000 7 6 5.1757 -0.1124 -1.2228 8 6 6.2397 -0.6680 -0.2615 9 1 7.2481 -0.3130 -0.4739 10 7 6.1727 -2.1212 -0.0886 11 6 7.2727 -2.8074 0.2798 12 8 8.3180 -2.2219 0.4677 13 6 7.2039 -4.3023 0.4571 14 6 8.5779 -4.8301 0.8750 15 8 8.5125 -6.2475 1.0437 16 6 9.6574 -6.8780 1.4163 17 6 9.6672 -8.2538 1.5923 18 6 10.8311 -8.8917 1.9763 19 6 10.8411 -10.3858 2.1731 20 8 9.9065 -10.7378 3.1951 21 14 12.5487 -10.9343 2.6772 22 6 11.9879 -8.1612 2.1745 23 6 11.9823 -6.7902 1.9938 24 6 10.8200 -6.1471 1.6155 25 6 5.5298 0.1184 0.8533 26 6 4.0560 2.5172 -0.0051 27 6 3.3020 3.6759 -0.0065 28 6 1.9208 3.6048 -0.0017 29 6 1.2914 2.3753 0.0040 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 5.4487 0.8430 -1.6711 34 1 4.8272 -0.8397 -1.9560 35 1 5.3367 -2.5896 -0.2391 36 1 6.9066 -4.7665 -0.4832 37 1 6.4725 -4.5434 1.2285 38 1 8.8747 -4.3659 1.8155 39 1 9.3097 -4.5889 0.1039 40 1 8.7647 -8.8254 1.4337 41 1 10.5622 -10.8769 1.2408 42 1 9.8595 -11.6867 3.3751 43 1 13.5249 -10.6024 1.6086 44 1 12.9407 -10.2717 3.9470 45 1 12.8977 -8.6622 2.4707 46 1 12.8874 -6.2218 2.1490 47 1 10.8159 -5.0763 1.4749 48 1 5.4662 -0.4232 1.7970 49 1 5.8995 1.1368 0.9726 50 1 5.1344 2.5753 -0.0090 51 1 3.7922 4.6381 -0.0105 52 1 1.3339 4.5115 -0.0023 53 1 0.2129 2.3204 0.0074 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_4549614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:08:53 Heat of formation + Delta-G solvation = -57.338256 kcal Electronic energy + Delta-G solvation = -33402.383930 eV Core-core repulsion = 28786.360942 eV Total energy + Delta-G solvation = -4616.022988 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.82249 -41.42630 -40.85816 -39.55709 -39.03457 -38.05919 -37.33478 -34.70045 -33.35659 -32.69869 -31.84036 -31.06699 -30.89260 -28.18013 -27.17521 -26.71091 -26.42940 -25.16395 -23.83021 -23.16695 -22.63476 -22.13178 -21.50847 -20.12571 -19.31234 -19.05677 -18.40380 -18.08455 -17.57571 -17.47729 -17.31218 -17.22981 -16.87640 -16.68305 -16.64047 -16.09845 -15.90441 -15.49048 -15.37437 -15.25987 -15.14157 -14.72830 -14.65073 -14.51134 -14.36713 -14.19539 -14.11739 -13.96557 -13.50175 -13.45375 -13.20301 -13.01414 -12.98511 -12.86866 -12.76177 -12.41833 -12.30387 -12.16880 -12.03644 -11.90905 -11.81569 -11.77509 -11.66898 -11.17961 -11.10892 -10.43044 -10.15613 -9.98082 -9.77736 -9.42327 -9.08935 -4.93885 0.05279 0.21440 0.32877 0.47108 1.27920 1.45980 1.62658 1.65303 1.98392 2.36634 2.40149 2.49513 2.74504 3.36447 3.45906 3.49522 3.65312 3.66067 3.70113 3.77458 3.81012 3.84544 3.90240 3.95393 3.98869 4.09164 4.13450 4.15357 4.17992 4.30069 4.30987 4.35498 4.38832 4.44285 4.47524 4.53677 4.62597 4.63300 4.68499 4.70231 4.72248 4.77012 4.83277 4.84474 4.93480 4.99254 5.08609 5.08830 5.16242 5.19837 5.27536 5.39236 5.45324 5.52922 5.57701 5.64552 5.83999 6.21010 6.41487 6.42668 6.90599 7.10613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.100 0.900 7 C -0.124 4.124 8 C 0.117 3.883 9 H 0.090 0.910 10 N -0.698 5.698 11 C 0.523 3.477 12 O -0.582 6.582 13 C -0.132 4.132 14 C 0.072 3.928 15 O -0.319 6.319 16 C 0.124 3.876 17 C -0.136 4.136 18 C -0.051 4.051 19 C -0.083 4.083 20 O -0.563 6.563 21 Si 0.783 3.217 22 C -0.181 4.181 23 C -0.076 4.076 24 C -0.211 4.211 25 C -0.141 4.141 26 C -0.087 4.087 27 C -0.163 4.163 28 C -0.094 4.094 29 C -0.217 4.217 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.418 0.582 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.405 0.595 43 H -0.287 1.287 44 H -0.298 1.298 45 H 0.121 0.879 46 H 0.149 0.851 47 H 0.143 0.857 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.143 0.857 51 H 0.139 0.861 52 H 0.140 0.860 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -2.334 -2.174 5.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.118 0.882 7 C -0.162 4.162 8 C 0.012 3.988 9 H 0.108 0.892 10 N -0.350 5.350 11 C 0.311 3.689 12 O -0.462 6.462 13 C -0.172 4.172 14 C -0.003 4.003 15 O -0.233 6.233 16 C 0.078 3.922 17 C -0.154 4.154 18 C -0.052 4.052 19 C -0.192 4.192 20 O -0.374 6.374 21 Si 0.689 3.311 22 C -0.199 4.199 23 C -0.094 4.094 24 C -0.230 4.230 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.181 4.181 28 C -0.112 4.112 29 C -0.236 4.236 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.116 0.884 42 H 0.256 0.744 43 H -0.214 1.214 44 H -0.226 1.226 45 H 0.139 0.861 46 H 0.167 0.833 47 H 0.160 0.840 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.161 0.839 51 H 0.157 0.843 52 H 0.158 0.842 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.642 -1.323 -1.921 4.325 hybrid contribution -0.853 0.916 -0.146 1.260 sum -4.495 -0.408 -2.068 4.964 Atomic orbital electron populations 1.23280 0.76913 1.05360 1.01910 1.86015 1.22869 1.26806 1.88710 1.19104 0.92310 0.84714 0.97209 1.19248 0.90290 0.96016 1.06118 1.21342 0.93694 0.95407 0.97184 0.88187 1.23371 0.94270 1.02485 0.96086 1.21830 0.99878 0.79950 0.97168 0.89182 1.45554 1.12969 1.07420 1.69058 1.20603 0.83208 0.89787 0.75304 1.90734 1.31265 1.72011 1.52150 1.21434 0.97986 0.90589 1.07157 1.22477 0.98570 0.77408 1.01843 1.85958 1.31513 1.22637 1.83142 1.19137 0.85595 0.92306 0.95121 1.20367 0.99354 0.91339 1.04353 1.19535 0.92920 0.95332 0.97384 1.24913 1.06365 0.92393 0.95508 1.86446 1.62542 1.31873 1.56497 0.94424 0.71846 0.88349 0.76452 1.20981 0.97773 0.95269 1.05860 1.21156 0.98519 0.93886 0.95841 1.21532 0.93024 1.01263 1.07141 1.23566 0.95316 1.01449 0.97664 1.21101 1.00833 0.90918 0.97615 1.21360 0.94155 0.99238 1.03375 1.21263 0.95186 0.97591 0.97114 1.21496 1.00913 0.92460 1.08722 0.92023 0.86549 0.92180 0.88019 0.89847 0.74511 0.85280 0.85575 0.91749 0.91426 0.84227 0.88428 0.74385 1.21438 1.22624 0.86130 0.83329 0.83964 0.91662 0.88275 0.83948 0.84314 0.84227 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.87 9.43 -92.43 -0.87 -1.74 16 3 C 0.11 0.41 6.66 22.51 0.15 0.56 16 4 C -0.12 -0.26 5.30 -19.77 -0.10 -0.37 16 5 C -0.06 0.04 3.75 -11.02 -0.04 0.00 16 6 H 0.10 -0.02 7.33 -2.38 -0.02 -0.04 16 7 C -0.12 0.34 7.29 31.12 0.23 0.57 16 8 C 0.12 -0.06 4.32 45.52 0.20 0.14 16 9 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 10 N -0.70 1.50 5.26 -440.04 -2.32 -0.81 16 11 C 0.52 1.19 7.83 87.66 0.69 1.88 16 12 O -0.58 -6.48 15.58 -3.02 -0.05 -6.52 16 13 C -0.13 0.32 6.07 29.85 0.18 0.50 16 14 C 0.07 0.23 4.03 71.98 0.29 0.52 16 15 O -0.32 -2.07 10.14 -92.53 -0.94 -3.01 16 16 C 0.12 1.06 6.69 22.51 0.15 1.21 16 17 C -0.14 -1.14 9.56 22.36 0.21 -0.93 16 18 C -0.05 -0.39 5.42 -19.88 -0.11 -0.50 16 19 C -0.08 -0.10 2.81 71.24 0.20 0.10 16 20 O -0.56 -0.71 12.75 -148.98 -1.90 -2.61 16 21 Si 0.78 -0.70 29.79 68.60 2.04 1.35 16 22 C -0.18 -1.44 8.67 22.28 0.19 -1.25 16 23 C -0.08 -0.50 10.04 22.25 0.22 -0.28 16 24 C -0.21 -1.53 9.04 22.37 0.20 -1.32 16 25 C -0.14 0.06 7.25 31.12 0.23 0.28 16 26 C -0.09 -0.06 8.61 22.25 0.19 0.13 16 27 C -0.16 -0.08 10.04 22.28 0.22 0.14 16 28 C -0.09 -0.08 10.04 22.26 0.22 0.15 16 29 C -0.22 -0.40 9.04 22.37 0.20 -0.20 16 30 H 0.06 -0.31 7.67 -2.39 -0.02 -0.33 16 31 H 0.12 -0.85 8.14 -2.39 -0.02 -0.86 16 32 H 0.06 -0.28 7.65 -2.39 -0.02 -0.30 16 33 H 0.10 -0.33 7.72 -2.38 -0.02 -0.35 16 34 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.42 -3.13 8.70 -92.71 -0.81 -3.93 16 36 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.06 0.31 7.62 -2.39 -0.02 0.29 16 39 H 0.07 0.28 7.62 -2.38 -0.02 0.26 16 40 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.10 -0.31 7.96 -2.38 -0.02 -0.33 16 42 H 0.40 -3.99 8.74 -74.06 -0.65 -4.64 16 43 H -0.29 -1.22 7.11 99.48 0.71 -0.52 16 44 H -0.30 -2.07 7.11 99.48 0.71 -1.36 16 45 H 0.12 0.79 4.87 -2.91 -0.01 0.78 16 46 H 0.15 0.26 8.06 -2.91 -0.02 0.24 16 47 H 0.14 0.68 6.30 -2.91 -0.02 0.66 16 48 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.10 -0.13 6.31 -2.39 -0.02 -0.15 16 50 H 0.14 -0.41 6.66 -2.91 -0.02 -0.43 16 51 H 0.14 -0.44 8.06 -2.92 -0.02 -0.46 16 52 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 53 H 0.14 -0.24 6.30 -2.91 -0.02 -0.26 16 Total: 0.00 -24.18 431.29 0.35 -23.83 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: -0.46 Total: -12.87 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.84 Total: 2.38 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -2.32 Total: -0.81 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -3.76 Total: -13.88 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.04 Total: 1.35 kcal Total: -24.18 0.35 -23.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_4549614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.506 kcal (2) G-P(sol) polarization free energy of solvation -24.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds