Wall clock time and date at job start Sun Mar 7 2021 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99779 * 2 1 4 4 C 1.38714 * 120.05576 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.02379 * 359.95673 * 4 3 2 6 6 H 1.08996 * 112.90851 * 348.74571 * 5 4 3 7 7 C 1.53785 * 113.61318 * 120.00404 * 5 4 3 8 8 C 1.53781 * 87.08365 * 139.97852 * 7 5 4 9 9 H 1.09000 * 113.61086 * 219.93469 * 8 7 5 10 10 N 1.46498 * 113.61518 * 89.11279 * 8 7 5 11 11 C 1.34775 * 120.00149 * 154.99971 * 10 8 7 12 12 O 1.21285 * 119.99392 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00229 * 179.97438 * 11 10 8 14 14 O 1.42904 * 109.46954 * 180.02562 * 13 11 10 15 15 C 1.35898 * 116.99683 * 180.02562 * 14 13 11 16 16 C 1.38716 * 120.05385 * 179.97438 * 15 14 13 17 17 N 1.48006 * 120.02646 * 359.97438 * 16 15 14 18 18 O 1.21799 * 119.99876 * 180.02562 * 17 16 15 19 19 O 1.21795 * 120.00126 * 0.02772 * 17 16 15 20 20 C 1.38166 * 119.94507 * 180.02562 * 16 15 14 21 21 C 1.38247 * 120.05350 * 359.97438 * 20 16 15 22 22 C 1.50699 * 119.94334 * 180.02562 * 21 20 16 23 23 O 1.42894 * 109.47188 * 64.99933 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 185.00606 * 22 21 20 25 25 C 1.38295 * 120.11188 * 0.27779 * 21 20 16 26 26 C 1.38122 * 120.05087 * 359.44970 * 25 21 20 27 27 C 1.53786 * 113.60959 * 217.49399 * 5 4 3 28 28 C 1.38167 * 119.94612 * 180.22876 * 4 3 2 29 29 C 1.38246 * 120.05344 * 359.52209 * 28 4 3 30 30 C 1.38279 * 120.10972 * 0.45570 * 29 28 4 31 31 C 1.38126 * 120.06263 * 359.79529 * 30 29 28 32 32 H 1.08993 * 109.46932 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46953 * 299.99990 * 1 2 3 34 34 H 1.09000 * 109.46795 * 59.99977 * 1 2 3 35 35 H 1.09001 * 113.61672 * 25.42324 * 7 5 4 36 36 H 1.09004 * 113.68412 * 254.53701 * 7 5 4 37 37 H 0.96999 * 120.00154 * 334.99604 * 10 8 7 38 38 H 1.08990 * 109.46761 * 60.00114 * 13 11 10 39 39 H 1.08994 * 109.46865 * 299.99836 * 13 11 10 40 40 H 1.08000 * 119.97323 * 179.97438 * 20 16 15 41 41 H 1.09006 * 109.46662 * 305.00202 * 22 21 20 42 42 H 0.96709 * 113.99337 * 60.00344 * 23 22 21 43 43 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 44 44 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 45 45 H 1.07995 * 119.96850 * 179.70130 * 25 21 20 46 46 H 1.08009 * 120.02377 * 180.29655 * 26 25 21 47 47 H 1.09000 * 113.61074 * 105.47863 * 27 5 4 48 48 H 1.09003 * 113.61905 * 334.56801 * 27 5 4 49 49 H 1.07995 * 119.97002 * 179.74488 * 28 4 3 50 50 H 1.08001 * 119.94019 * 180.20853 * 29 28 4 51 51 H 1.08001 * 119.97240 * 179.77218 * 30 29 28 52 52 H 1.07994 * 120.03058 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 0.0005 5 6 4.2537 0.0221 0.0021 6 1 3.6601 -0.8706 0.1986 7 6 5.1809 -0.1106 -1.2176 8 6 6.2408 -0.6676 -0.2527 9 1 7.2501 -0.3123 -0.4604 10 7 6.1731 -2.1211 -0.0822 11 6 7.2715 -2.8079 0.2897 12 8 8.3158 -2.2224 0.4836 13 6 7.2017 -4.3029 0.4657 14 8 8.4835 -4.7964 0.8603 15 6 8.5936 -6.1358 1.0619 16 6 9.8090 -6.6830 1.4458 17 7 10.9879 -5.8086 1.6359 18 8 12.0550 -6.2896 1.9725 19 8 10.8910 -4.6079 1.4556 20 6 9.9185 -8.0452 1.6496 21 6 8.8178 -8.8626 1.4717 22 6 8.9399 -10.3479 1.6953 23 8 9.2259 -10.6004 3.0723 24 14 7.3388 -11.1794 1.2308 25 6 7.6062 -8.3201 1.0840 26 6 7.4903 -6.9583 0.8844 27 6 5.5263 0.1172 0.8603 28 6 4.0560 2.5172 0.0053 29 6 3.3019 3.6758 -0.0004 30 6 1.9209 3.6047 -0.0014 31 6 1.2914 2.3753 -0.0010 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 5.4556 0.8455 -1.6634 36 1 4.8354 -0.8369 -1.9533 37 1 5.3378 -2.5892 -0.2369 38 1 6.9079 -4.7662 -0.4761 39 1 6.4675 -4.5444 1.2341 40 1 10.8647 -8.4718 1.9481 41 1 9.7469 -10.7430 1.0782 42 1 8.5483 -10.2750 3.6808 43 1 7.4460 -12.6446 1.4473 44 1 6.2251 -10.6266 2.0429 45 1 6.7491 -8.9614 0.9410 46 1 6.5426 -6.5345 0.5862 47 1 5.4587 -0.4259 1.8030 48 1 5.8955 1.1354 0.9826 49 1 5.1344 2.5752 0.0099 50 1 3.7923 4.6381 -0.0001 51 1 1.3340 4.5113 -0.0022 52 1 0.2128 2.3204 -0.0014 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_4549638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:09:29 Heat of formation + Delta-G solvation = -44.788686 kcal Electronic energy + Delta-G solvation = -38613.363575 eV Core-core repulsion = 33322.405960 eV Total energy + Delta-G solvation = -5290.957614 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 415.160 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.28879 -41.90650 -41.57330 -40.79076 -39.78478 -39.05530 -38.02185 -37.61674 -37.45238 -34.71770 -33.46931 -32.30891 -31.95514 -31.04223 -29.79369 -28.12129 -27.80948 -26.67885 -26.66049 -25.99538 -24.18232 -23.18786 -22.85999 -22.57315 -21.90999 -20.55100 -20.14020 -19.77360 -19.14658 -19.10312 -18.63330 -18.47050 -18.22263 -17.59676 -17.42041 -17.16602 -16.80723 -16.66547 -16.63271 -16.35826 -16.12570 -15.75782 -15.67249 -15.39495 -15.34788 -15.09005 -14.85355 -14.72734 -14.32454 -14.07649 -14.00103 -13.86211 -13.67488 -13.45462 -13.22531 -13.13603 -12.98257 -12.74317 -12.70031 -12.39514 -12.34827 -12.28785 -12.26609 -12.20799 -12.00813 -11.78739 -11.74187 -11.63071 -11.15417 -11.03237 -10.84367 -10.72498 -10.15579 -9.80929 -9.75476 -9.06370 -4.90693 -1.30785 -0.23916 0.16240 0.35070 0.35992 0.49425 1.19854 1.27175 1.44291 1.59762 2.01534 2.05501 2.31183 2.39072 2.76681 3.11655 3.24326 3.35772 3.45880 3.49285 3.59531 3.68382 3.71704 3.72310 3.76424 3.92660 3.93334 3.99836 4.04196 4.12201 4.20512 4.29055 4.34304 4.38836 4.39382 4.46992 4.49900 4.56002 4.64419 4.65806 4.71708 4.75705 4.80668 4.84418 4.85340 4.96069 5.02645 5.08236 5.11078 5.18070 5.19774 5.41126 5.46411 5.60006 5.66962 5.76537 5.85788 6.42321 6.44533 6.45004 6.45759 7.15160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.115 3.885 4 C -0.116 4.116 5 C -0.055 4.055 6 H 0.107 0.893 7 C -0.122 4.122 8 C 0.118 3.882 9 H 0.084 0.916 10 N -0.691 5.691 11 C 0.510 3.490 12 O -0.564 6.564 13 C 0.025 3.975 14 O -0.291 6.291 15 C 0.194 3.806 16 C -0.105 4.105 17 N 0.034 4.966 18 O -0.203 6.203 19 O -0.174 6.174 20 C -0.003 4.003 21 C -0.147 4.147 22 C -0.091 4.091 23 O -0.551 6.551 24 Si 0.789 3.211 25 C -0.006 4.006 26 C -0.189 4.189 27 C -0.144 4.144 28 C -0.088 4.088 29 C -0.165 4.165 30 C -0.094 4.094 31 C -0.218 4.218 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.422 0.578 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.126 0.874 42 H 0.389 0.611 43 H -0.309 1.309 44 H -0.258 1.258 45 H 0.188 0.812 46 H 0.206 0.794 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.141 0.859 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.874 -3.664 -5.175 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.069 3.931 4 C -0.116 4.116 5 C -0.073 4.073 6 H 0.125 0.875 7 C -0.160 4.160 8 C 0.013 3.987 9 H 0.102 0.898 10 N -0.345 5.345 11 C 0.296 3.704 12 O -0.441 6.441 13 C -0.052 4.052 14 O -0.201 6.201 15 C 0.144 3.856 16 C -0.190 4.190 17 N 0.544 4.456 18 O -0.410 6.410 19 O -0.388 6.388 20 C -0.022 4.022 21 C -0.148 4.148 22 C -0.198 4.198 23 O -0.359 6.359 24 Si 0.692 3.308 25 C -0.023 4.023 26 C -0.207 4.207 27 C -0.182 4.182 28 C -0.106 4.106 29 C -0.183 4.183 30 C -0.112 4.112 31 C -0.236 4.236 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.260 0.740 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.239 0.761 43 H -0.238 1.238 44 H -0.184 1.184 45 H 0.205 0.795 46 H 0.223 0.777 47 H 0.085 0.915 48 H 0.113 0.887 49 H 0.158 0.842 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.547 -4.414 -5.082 16.942 hybrid contribution 0.442 0.907 1.464 1.778 sum -15.105 -3.508 -3.618 15.923 Atomic orbital electron populations 1.23282 0.76931 1.05422 1.01835 1.86003 1.22808 1.26616 1.88682 1.19060 0.92213 0.84713 0.97078 1.19248 0.90323 0.96006 1.06056 1.21356 0.93509 0.95480 0.96945 0.87521 1.23364 0.94008 1.02494 0.96138 1.21806 0.99827 0.79729 0.97350 0.89767 1.45306 1.12640 1.07228 1.69342 1.20520 0.83701 0.89579 0.76569 1.90850 1.31550 1.71469 1.50233 1.23113 0.84327 0.91445 1.06276 1.86471 1.34560 1.18232 1.80878 1.18974 0.91956 0.84140 0.90482 1.20869 0.84608 0.91651 1.21871 1.43902 1.02576 1.01807 0.97288 1.94501 1.17030 1.78604 1.50907 1.94680 1.91424 0.97905 1.54759 1.20862 1.01705 0.88121 0.91489 1.20364 0.92805 0.97128 1.04547 1.25511 1.15951 0.92671 0.85672 1.86640 1.50701 1.82477 1.16090 0.94115 0.71790 0.75807 0.89119 1.21755 0.97145 0.94932 0.88501 1.21805 0.98445 0.93561 1.06912 1.23582 0.95515 1.01359 0.97769 1.21102 1.00770 0.91064 0.97635 1.21347 0.94213 0.99220 1.03502 1.21247 0.95117 0.97664 0.97169 1.21497 1.00924 0.92471 1.08736 0.86351 0.92319 0.92115 0.88315 0.89254 0.74011 0.83488 0.83970 0.83167 0.85620 0.76142 1.23765 1.18387 0.79539 0.77737 0.91509 0.88666 0.84158 0.84554 0.84365 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 0.99 16 2 O -0.33 0.01 9.43 -92.39 -0.87 -0.86 16 3 C 0.11 0.20 6.66 22.51 0.15 0.35 16 4 C -0.12 -0.08 5.30 -19.77 -0.10 -0.18 16 5 C -0.05 0.16 3.75 -11.01 -0.04 0.12 16 6 H 0.11 -0.42 7.33 -2.39 -0.02 -0.44 16 7 C -0.12 0.58 7.29 31.12 0.23 0.81 16 8 C 0.12 -0.20 4.32 45.52 0.20 0.00 16 9 H 0.08 0.32 7.46 -2.39 -0.02 0.30 16 10 N -0.69 3.60 5.26 -440.03 -2.32 1.28 16 11 C 0.51 0.73 7.91 87.66 0.69 1.42 16 12 O -0.56 -8.55 16.10 15.99 0.26 -8.30 16 13 C 0.03 -0.18 5.22 71.24 0.37 0.19 16 14 O -0.29 -1.31 7.68 -63.38 -0.49 -1.80 16 15 C 0.19 0.10 6.67 22.51 0.15 0.25 16 16 C -0.10 -0.73 6.87 36.48 0.25 -0.48 16 17 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 18 O -0.20 -3.83 18.45 18.89 0.35 -3.48 16 19 O -0.17 -3.81 17.24 25.62 0.44 -3.37 16 20 C 0.00 0.00 9.19 22.25 0.20 0.20 16 21 C -0.15 0.86 5.35 -19.85 -0.11 0.76 16 22 C -0.09 0.58 2.80 71.24 0.20 0.78 16 23 O -0.55 0.82 12.83 -148.98 -1.91 -1.09 16 24 Si 0.79 -8.04 29.87 68.60 2.05 -5.99 16 25 C -0.01 0.07 8.66 22.26 0.19 0.26 16 26 C -0.19 2.06 9.04 22.36 0.20 2.26 16 27 C -0.14 0.22 7.25 31.12 0.23 0.45 16 28 C -0.09 0.00 8.62 22.25 0.19 0.19 16 29 C -0.16 -0.01 10.04 22.28 0.22 0.21 16 30 C -0.09 -0.01 10.04 22.25 0.22 0.22 16 31 C -0.22 -0.12 9.04 22.37 0.20 0.08 16 32 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 33 H 0.06 -0.39 7.66 -2.39 -0.02 -0.41 16 34 H 0.06 -0.43 7.66 -2.39 -0.02 -0.44 16 35 H 0.10 -0.43 7.73 -2.39 -0.02 -0.45 16 36 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.42 -5.54 8.70 -92.71 -0.81 -6.35 16 38 H 0.15 -2.40 7.66 -2.39 -0.02 -2.42 16 39 H 0.14 -2.23 7.66 -2.39 -0.02 -2.24 16 40 H 0.15 0.54 7.61 -2.91 -0.02 0.52 16 41 H 0.13 -0.85 7.96 -2.38 -0.02 -0.87 16 42 H 0.39 -3.11 8.70 -74.05 -0.64 -3.75 16 43 H -0.31 0.03 7.11 99.48 0.71 0.73 16 44 H -0.26 2.46 7.01 99.48 0.70 3.16 16 45 H 0.19 -3.57 4.84 -2.91 -0.01 -3.58 16 46 H 0.21 -4.28 6.30 -2.91 -0.02 -4.30 16 47 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.09 -0.14 6.30 -2.39 -0.02 -0.15 16 49 H 0.14 -0.42 6.64 -2.91 -0.02 -0.44 16 50 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 51 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 52 H 0.14 -0.43 6.30 -2.91 -0.02 -0.45 16 Total: 0.00 -40.47 436.34 1.67 -38.80 By element: Atomic # 1 Polarization: -24.04 SS G_CDS: -0.40 Total: -24.44 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.77 Total: 8.87 kcal Atomic # 7 Polarization: 4.18 SS G_CDS: -2.52 Total: 1.66 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -2.22 Total: -18.90 kcal Atomic # 14 Polarization: -8.04 SS G_CDS: 2.05 Total: -5.99 kcal Total: -40.47 1.67 -38.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_4549638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -40.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds