Wall clock time and date at job start Sun Mar 7 2021 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38708 * 120.05461 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.02785 * 359.97438 * 4 3 2 6 6 H 1.08997 * 112.84640 * 9.66186 * 5 4 3 7 7 C 1.53780 * 113.61616 * 140.86371 * 5 4 3 8 8 C 1.53952 * 87.01925 * 139.95020 * 7 5 4 9 9 H 1.09006 * 113.66787 * 220.06846 * 8 7 5 10 10 N 1.46497 * 113.61450 * 89.19863 * 8 7 5 11 11 C 1.34782 * 119.99728 * 107.46442 * 10 8 7 12 12 O 1.21279 * 119.99959 * 0.02562 * 11 10 8 13 13 C 1.50705 * 119.99592 * 180.02562 * 11 10 8 14 14 O 1.42907 * 109.46856 * 180.02562 * 13 11 10 15 15 C 1.35893 * 116.99832 * 179.97438 * 14 13 11 16 16 C 1.38707 * 120.05615 * 179.72606 * 15 14 13 17 17 C 1.38164 * 119.94828 * 179.68008 * 16 15 14 18 18 C 1.50699 * 119.97904 * 180.31787 * 17 16 15 19 19 O 1.42907 * 109.47256 * 300.30216 * 18 17 16 20 20 Si 1.86297 * 109.47513 * 180.29760 * 18 17 16 21 21 C 1.38251 * 120.05416 * 0.61937 * 17 16 15 22 22 C 1.38287 * 120.10636 * 359.67849 * 21 17 16 23 23 C 1.38120 * 120.05912 * 0.02562 * 22 21 17 24 24 C 1.53780 * 87.11445 * 334.63563 * 8 7 5 25 25 C 1.38163 * 119.94499 * 179.97438 * 4 3 2 26 26 C 1.38243 * 120.05438 * 0.02562 * 25 4 3 27 27 C 1.38289 * 120.11362 * 359.97438 * 26 25 4 28 28 C 1.38125 * 120.05159 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 30 30 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 31 31 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.08996 * 113.61428 * 254.53196 * 7 5 4 33 33 H 1.09008 * 113.61366 * 25.43181 * 7 5 4 34 34 H 0.97001 * 120.00106 * 287.46884 * 10 8 7 35 35 H 1.08998 * 109.46970 * 300.00036 * 13 11 10 36 36 H 1.08993 * 109.47196 * 60.00323 * 13 11 10 37 37 H 1.08006 * 120.02737 * 0.02562 * 16 15 14 38 38 H 1.09004 * 109.46712 * 60.29797 * 18 17 16 39 39 H 0.96698 * 114.00172 * 179.97438 * 19 18 17 40 40 H 1.48494 * 110.00109 * 298.68424 * 20 18 17 41 41 H 1.48506 * 109.99945 * 60.00336 * 20 18 17 42 42 H 1.07998 * 119.94596 * 179.69982 * 21 17 16 43 43 H 1.08001 * 119.96965 * 180.02562 * 22 21 17 44 44 H 1.08007 * 120.02963 * 180.02562 * 23 22 21 45 45 H 1.09003 * 113.61936 * 270.81692 * 24 8 7 46 46 H 1.09001 * 113.61536 * 139.90241 * 24 8 7 47 47 H 1.08001 * 119.97059 * 179.97438 * 25 4 3 48 48 H 1.08004 * 119.94070 * 180.02562 * 26 25 4 49 49 H 1.07993 * 119.96940 * 180.28495 * 27 26 25 50 50 H 1.08000 * 120.02364 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0221 -0.0005 6 1 3.6550 -0.8731 -0.1687 7 6 5.5054 0.1022 -0.8903 8 6 6.2460 -0.6640 0.2208 9 1 7.2595 -0.3045 0.3994 10 7 6.1761 -2.1201 0.0763 11 6 7.2665 -2.8122 -0.3090 12 8 8.3057 -2.2295 -0.5357 13 6 7.1944 -4.3101 -0.4581 14 8 8.4677 -4.8094 -0.8725 15 6 8.5747 -6.1519 -1.0539 16 6 9.7802 -6.7041 -1.4611 17 6 9.8883 -8.0700 -1.6384 18 6 11.1996 -8.6714 -2.0740 19 8 11.5791 -8.1225 -3.3377 20 14 11.0146 -10.5186 -2.2296 21 6 8.7926 -8.8851 -1.4226 22 6 7.5880 -8.3364 -1.0225 23 6 7.4765 -6.9721 -0.8380 24 6 5.2078 -0.0915 1.2002 25 6 4.0560 2.5171 -0.0011 26 6 3.3019 3.6757 -0.0005 27 6 1.9209 3.6047 0.0000 28 6 1.2914 2.3752 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 5.4154 -0.4564 -1.8219 33 1 5.8714 1.1183 -1.0386 34 1 5.3450 -2.5862 0.2580 35 1 6.9226 -4.7577 0.4978 36 1 6.4431 -4.5651 -1.2054 37 1 10.6352 -6.0673 -1.6342 38 1 11.9671 -8.4441 -1.3340 39 1 12.4161 -8.4650 -3.6799 40 1 10.6513 -11.1052 -0.9147 41 1 9.9711 -10.8416 -3.2356 42 1 8.8778 -9.9520 -1.5664 43 1 6.7336 -8.9752 -0.8541 44 1 6.5355 -6.5441 -0.5251 45 1 5.4922 0.8714 1.6245 46 1 4.8778 -0.8065 1.9539 47 1 5.1344 2.5751 -0.0011 48 1 3.7923 4.6380 -0.0014 49 1 1.3341 4.5113 -0.0042 50 1 0.2128 2.3203 0.0005 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:09:46 Heat of formation + Delta-G solvation = -48.616094 kcal Electronic energy + Delta-G solvation = -31806.146286 eV Core-core repulsion = 27346.039138 eV Total energy + Delta-G solvation = -4460.107148 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.89343 -41.47827 -40.75947 -39.57943 -38.81172 -38.03703 -37.30732 -34.77018 -32.69561 -32.18340 -31.60783 -31.06340 -29.37088 -28.14366 -26.87830 -26.71970 -26.01714 -23.82392 -23.36299 -22.85547 -22.43952 -21.65515 -20.17276 -19.32499 -19.05693 -18.44466 -18.28999 -17.67812 -17.51761 -17.41047 -17.12498 -16.67839 -16.67027 -16.65067 -15.89714 -15.73303 -15.58337 -15.36703 -15.14900 -15.05362 -14.73296 -14.63683 -14.36094 -14.32133 -14.06142 -13.85508 -13.71075 -13.49235 -13.25454 -13.14773 -13.01400 -12.77817 -12.47778 -12.32250 -12.26364 -12.19375 -12.03650 -11.86010 -11.78038 -11.67264 -11.19490 -11.09038 -10.44022 -10.22070 -9.97400 -9.77724 -9.43201 -9.08851 -4.92892 0.06487 0.22172 0.32950 0.47342 1.24892 1.35283 1.41036 1.65523 1.96538 2.36543 2.48266 2.51364 2.74532 3.36723 3.43455 3.45042 3.64883 3.66095 3.72050 3.78236 3.84931 3.90642 3.94852 3.97048 4.02282 4.08856 4.14592 4.18076 4.19629 4.31079 4.35620 4.39317 4.44429 4.47419 4.54639 4.60962 4.68926 4.72344 4.76571 4.80788 4.84586 4.91732 4.98481 5.07543 5.08486 5.13621 5.18519 5.28863 5.38939 5.41981 5.52296 5.57608 5.63967 5.83992 6.16130 6.38486 6.42607 6.87550 7.04818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.102 0.898 7 C -0.142 4.142 8 C 0.117 3.883 9 H 0.088 0.912 10 N -0.692 5.692 11 C 0.517 3.483 12 O -0.569 6.569 13 C 0.036 3.964 14 O -0.317 6.317 15 C 0.120 3.880 16 C -0.144 4.144 17 C -0.052 4.052 18 C -0.091 4.091 19 O -0.566 6.566 20 Si 0.789 3.211 21 C -0.181 4.181 22 C -0.071 4.071 23 C -0.202 4.202 24 C -0.122 4.122 25 C -0.087 4.087 26 C -0.163 4.163 27 C -0.093 4.093 28 C -0.218 4.218 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.420 0.580 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.404 0.596 40 H -0.283 1.283 41 H -0.294 1.294 42 H 0.123 0.877 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -2.347 2.337 6.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.075 4.075 6 H 0.121 0.879 7 C -0.181 4.181 8 C 0.012 3.988 9 H 0.106 0.894 10 N -0.346 5.346 11 C 0.303 3.697 12 O -0.447 6.447 13 C -0.041 4.041 14 O -0.231 6.231 15 C 0.075 3.925 16 C -0.163 4.163 17 C -0.052 4.052 18 C -0.199 4.199 19 O -0.376 6.376 20 Si 0.693 3.307 21 C -0.198 4.198 22 C -0.089 4.089 23 C -0.221 4.221 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.111 4.111 28 C -0.236 4.236 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.258 0.742 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.255 0.745 40 H -0.210 1.210 41 H -0.222 1.222 42 H 0.140 0.860 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.122 -2.327 2.314 6.083 hybrid contribution -1.011 0.717 0.174 1.251 sum -6.133 -1.611 2.488 6.812 Atomic orbital electron populations 1.23278 0.76922 1.05360 1.01902 1.86009 1.22850 1.26776 1.88713 1.19082 0.92268 0.84705 0.97163 1.19241 0.90294 0.95987 1.06163 1.21350 0.93637 0.95524 0.96980 0.87935 1.23604 0.95419 1.01514 0.97521 1.21886 1.00005 0.79387 0.97534 0.89407 1.45360 1.13366 1.07197 1.68652 1.20488 0.83561 0.89439 0.76222 1.90762 1.31679 1.71844 1.50464 1.22754 0.85733 0.90949 1.04708 1.86127 1.34061 1.19763 1.83101 1.19184 0.95002 0.82107 0.96218 1.20326 0.96947 0.94699 1.04281 1.19511 0.95210 0.92805 0.97692 1.25056 0.95150 1.11052 0.88685 1.86453 1.46232 1.70422 1.34474 0.94230 0.86033 0.72561 0.77855 1.21023 0.94091 0.99114 1.05622 1.21244 0.97509 0.94880 0.95261 1.21615 0.98975 0.94386 1.07075 1.23379 0.93982 1.02519 0.96135 1.21098 1.00824 0.90955 0.97583 1.21359 0.94170 0.99236 1.03391 1.21258 0.95166 0.97612 0.97094 1.21496 1.00918 0.92466 1.08737 0.92019 0.92229 0.86523 0.91630 0.88297 0.74211 0.85434 0.85779 0.85842 0.89091 0.74497 1.21021 1.22197 0.86001 0.82317 0.81619 0.87897 0.89518 0.84001 0.84361 0.84248 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.66 9.42 -92.41 -0.87 -1.53 16 3 C 0.11 0.36 6.66 22.50 0.15 0.51 16 4 C -0.12 -0.23 5.30 -19.77 -0.10 -0.33 16 5 C -0.06 0.06 3.75 -11.01 -0.04 0.02 16 6 H 0.10 -0.12 7.31 -2.39 -0.02 -0.14 16 7 C -0.14 0.02 7.27 31.18 0.23 0.24 16 8 C 0.12 0.00 4.33 45.58 0.20 0.20 16 9 H 0.09 0.39 7.46 -2.38 -0.02 0.38 16 10 N -0.69 1.28 5.26 -439.75 -2.32 -1.04 16 11 C 0.52 2.53 7.91 87.66 0.69 3.22 16 12 O -0.57 -9.35 16.10 16.01 0.26 -9.10 16 13 C 0.04 -0.02 5.22 71.24 0.37 0.35 16 14 O -0.32 -2.93 9.67 -73.31 -0.71 -3.64 16 15 C 0.12 0.93 6.69 22.51 0.15 1.08 16 16 C -0.14 -1.47 9.55 22.36 0.21 -1.26 16 17 C -0.05 -0.41 5.42 -19.88 -0.11 -0.52 16 18 C -0.09 -0.22 2.81 71.24 0.20 -0.02 16 19 O -0.57 -1.81 12.74 -148.98 -1.90 -3.71 16 20 Si 0.79 -0.86 29.79 68.60 2.04 1.18 16 21 C -0.18 -1.07 8.67 22.28 0.19 -0.88 16 22 C -0.07 -0.14 10.04 22.25 0.22 0.08 16 23 C -0.20 -0.31 9.04 22.37 0.20 -0.11 16 24 C -0.12 0.38 7.29 31.12 0.23 0.61 16 25 C -0.09 -0.05 8.54 22.25 0.19 0.14 16 26 C -0.16 -0.08 10.04 22.28 0.22 0.15 16 27 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 28 C -0.22 -0.35 9.04 22.36 0.20 -0.14 16 29 H 0.06 -0.34 7.66 -2.39 -0.02 -0.36 16 30 H 0.06 -0.30 7.66 -2.39 -0.02 -0.32 16 31 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.10 -0.08 6.40 -2.38 -0.02 -0.10 16 34 H 0.42 -3.66 8.70 -92.71 -0.81 -4.47 16 35 H 0.13 -0.95 7.66 -2.39 -0.02 -0.96 16 36 H 0.12 -0.83 7.66 -2.39 -0.02 -0.85 16 37 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.09 -0.09 7.96 -2.38 -0.02 -0.11 16 39 H 0.40 -3.20 8.74 -74.06 -0.65 -3.84 16 40 H -0.28 -0.96 7.11 99.48 0.71 -0.25 16 41 H -0.29 -1.77 7.11 99.48 0.71 -1.06 16 42 H 0.12 0.55 4.87 -2.91 -0.01 0.53 16 43 H 0.16 -0.67 8.06 -2.91 -0.02 -0.70 16 44 H 0.17 -1.06 6.30 -2.91 -0.02 -1.07 16 45 H 0.10 -0.36 7.64 -2.39 -0.02 -0.38 16 46 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.14 -0.40 6.73 -2.91 -0.02 -0.42 16 48 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 49 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 50 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16 Total: 0.00 -29.32 410.33 0.83 -28.49 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: -0.42 Total: -15.19 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.75 Total: 4.53 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -2.32 Total: -1.04 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -3.22 Total: -17.97 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.04 Total: 1.18 kcal Total: -29.32 0.83 -28.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.129 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds