Wall clock time and date at job start Sun Mar 7 2021 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99870 * 2 1 4 4 C 1.38718 * 120.05487 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.02740 * 359.95623 * 4 3 2 6 6 H 1.08995 * 112.90888 * 348.75001 * 5 4 3 7 7 C 1.53781 * 113.61282 * 120.00113 * 5 4 3 8 8 C 1.53782 * 87.07938 * 139.97909 * 7 5 4 9 9 H 1.08997 * 113.61033 * 219.93064 * 8 7 5 10 10 N 1.46506 * 113.61160 * 89.11810 * 8 7 5 11 11 C 1.34775 * 119.99679 * 154.99860 * 10 8 7 12 12 O 1.21285 * 120.00341 * 359.97438 * 11 10 8 13 13 C 1.50707 * 119.99924 * 179.97438 * 11 10 8 14 14 O 1.42895 * 109.47246 * 180.02562 * 13 11 10 15 15 C 1.35990 * 117.00021 * 180.02562 * 14 13 11 16 16 C 1.39159 * 120.07156 * 179.97438 * 15 14 13 17 17 O 1.35988 * 120.07398 * 359.95861 * 16 15 14 18 18 C 1.42903 * 117.00050 * 180.02562 * 17 16 15 19 19 C 1.38567 * 119.85048 * 179.97438 * 16 15 14 20 20 C 1.38241 * 120.00329 * 0.02562 * 19 16 15 21 21 C 1.50699 * 119.92870 * 179.97438 * 20 19 16 22 22 O 1.42901 * 109.46830 * 300.00129 * 21 20 19 23 23 Si 1.86298 * 109.46950 * 180.02562 * 21 20 19 24 24 C 1.38255 * 120.14388 * 0.25819 * 20 19 16 25 25 C 1.38246 * 120.14603 * 359.48603 * 24 20 19 26 26 C 1.53773 * 87.08061 * 334.56792 * 8 7 5 27 27 C 1.38170 * 119.94060 * 180.23021 * 4 3 2 28 28 C 1.38245 * 120.05649 * 359.51937 * 27 4 3 29 29 C 1.38286 * 120.11165 * 0.46035 * 28 27 4 30 30 C 1.38125 * 120.05709 * 359.79106 * 29 28 27 31 31 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47493 * 300.00308 * 1 2 3 33 33 H 1.09001 * 109.47124 * 60.00556 * 1 2 3 34 34 H 1.08995 * 113.61566 * 25.42619 * 7 5 4 35 35 H 1.09004 * 113.61052 * 254.52811 * 7 5 4 36 36 H 0.96998 * 119.99969 * 334.99575 * 10 8 7 37 37 H 1.09002 * 109.46605 * 60.00160 * 13 11 10 38 38 H 1.08995 * 109.46902 * 300.00426 * 13 11 10 39 39 H 1.08996 * 109.46870 * 300.00097 * 18 17 16 40 40 H 1.09001 * 109.47130 * 60.00141 * 18 17 16 41 41 H 1.08997 * 109.47260 * 179.97438 * 18 17 16 42 42 H 1.07999 * 119.99715 * 179.97438 * 19 16 15 43 43 H 1.08991 * 109.47351 * 60.00277 * 21 20 19 44 44 H 0.96708 * 114.00246 * 299.99864 * 22 21 20 45 45 H 1.48506 * 109.99834 * 180.02562 * 23 21 20 46 46 H 1.48502 * 110.00011 * 301.31529 * 23 21 20 47 47 H 1.08005 * 119.92659 * 179.74180 * 24 20 19 48 48 H 1.08002 * 119.99843 * 180.25905 * 25 24 20 49 49 H 1.09005 * 113.61397 * 139.98772 * 26 8 7 50 50 H 1.09004 * 113.61313 * 270.88255 * 26 8 7 51 51 H 1.07994 * 119.96955 * 179.74494 * 27 4 3 52 52 H 1.07997 * 119.94074 * 180.20991 * 28 27 4 53 53 H 1.08001 * 119.97249 * 179.77073 * 29 28 27 54 54 H 1.07997 * 120.02985 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2537 0.0222 0.0021 6 1 3.6602 -0.8706 0.1986 7 6 5.1808 -0.1105 -1.2176 8 6 6.2407 -0.6675 -0.2526 9 1 7.2500 -0.3123 -0.4604 10 7 6.1731 -2.1211 -0.0822 11 6 7.2715 -2.8078 0.2897 12 8 8.3161 -2.2225 0.4829 13 6 7.2018 -4.3029 0.4656 14 8 8.4835 -4.7964 0.8603 15 6 8.5937 -6.1367 1.0619 16 6 9.8129 -6.6860 1.4471 17 8 10.8969 -5.8838 1.6219 18 6 12.1155 -6.5168 2.0172 19 6 9.9199 -8.0523 1.6519 20 6 8.8171 -8.8665 1.4729 21 6 8.9355 -10.3523 1.6955 22 8 9.9124 -10.8913 0.8026 23 14 7.2883 -11.1614 1.3748 24 6 7.6073 -8.3215 1.0846 25 6 7.4924 -6.9585 0.8837 26 6 5.5262 0.1171 0.8602 27 6 4.0559 2.5172 0.0053 28 6 3.3018 3.6758 -0.0004 29 6 1.9208 3.6048 -0.0014 30 6 1.2913 2.3753 -0.0010 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 5.4555 0.8455 -1.6634 35 1 4.8343 -0.8373 -1.9524 36 1 5.3377 -2.5892 -0.2370 37 1 6.9080 -4.7662 -0.4763 38 1 6.4675 -4.5445 1.2340 39 1 11.9690 -7.0232 2.9712 40 1 12.4088 -7.2448 1.2608 41 1 12.8984 -5.7655 2.1207 42 1 10.8650 -8.4811 1.9504 43 1 9.2398 -10.5424 2.7247 44 1 9.7061 -10.7584 -0.1328 45 1 7.3916 -12.6269 1.5915 46 1 6.2564 -10.5869 2.2750 47 1 6.7491 -8.9615 0.9418 48 1 6.5451 -6.5348 0.5844 49 1 5.4587 -0.4258 1.8030 50 1 5.8954 1.1354 0.9826 51 1 5.1343 2.5753 0.0099 52 1 3.7922 4.6381 -0.0001 53 1 1.3339 4.5114 -0.0022 54 1 0.2128 2.3203 -0.0022 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_60476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:03 Heat of formation + Delta-G solvation = -82.737937 kcal Electronic energy + Delta-G solvation = -36477.432558 eV Core-core repulsion = 31541.625965 eV Total energy + Delta-G solvation = -4935.806593 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.91085 -41.64187 -40.86362 -39.76710 -39.07035 -38.79885 -38.01109 -36.91208 -34.71042 -32.20727 -31.81547 -31.42857 -31.04303 -29.51660 -28.46244 -28.11428 -26.68605 -26.31612 -25.91620 -23.74479 -23.12377 -22.69737 -22.46556 -21.80312 -20.15891 -19.79270 -19.09313 -18.51744 -18.37667 -17.92376 -17.53440 -17.39271 -17.13503 -16.82784 -16.70256 -16.63384 -16.61802 -16.08744 -15.92146 -15.68300 -15.55045 -15.48372 -15.34480 -15.05099 -14.94272 -14.63259 -14.32994 -14.28530 -14.00987 -13.77132 -13.60793 -13.51381 -13.42760 -13.12870 -12.98668 -12.75277 -12.63806 -12.53482 -12.29161 -12.17381 -12.06722 -12.01175 -12.00393 -11.76098 -11.72704 -11.63594 -11.16035 -11.01254 -10.43582 -10.16427 -9.78814 -9.75615 -9.06511 -8.91137 -4.96333 0.16793 0.27856 0.35033 0.49395 1.34229 1.43468 1.46713 1.67376 2.00304 2.30815 2.39043 2.56179 2.56756 2.76645 3.48072 3.48980 3.51669 3.67915 3.68956 3.71532 3.86928 3.90572 3.93026 4.00555 4.04900 4.10803 4.13176 4.14335 4.20277 4.28387 4.30183 4.33735 4.36647 4.38351 4.46661 4.49705 4.50110 4.63297 4.65174 4.66211 4.71276 4.75066 4.79913 4.84896 4.95346 5.00474 5.01906 5.10863 5.12464 5.17459 5.37063 5.41196 5.45905 5.58923 5.60299 5.66816 5.85986 5.96782 6.40668 6.45019 6.53995 6.77974 7.13168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.056 4.056 6 H 0.104 0.896 7 C -0.122 4.122 8 C 0.118 3.882 9 H 0.086 0.914 10 N -0.692 5.692 11 C 0.515 3.485 12 O -0.571 6.571 13 C 0.035 3.965 14 O -0.314 6.314 15 C 0.084 3.916 16 C 0.077 3.923 17 O -0.335 6.335 18 C 0.021 3.979 19 C -0.152 4.152 20 C -0.119 4.119 21 C -0.076 4.076 22 O -0.557 6.557 23 Si 0.787 3.213 24 C -0.110 4.110 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.087 4.087 28 C -0.164 4.164 29 C -0.094 4.094 30 C -0.218 4.218 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.420 0.580 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.395 0.605 45 H -0.303 1.303 46 H -0.279 1.279 47 H 0.159 0.841 48 H 0.176 0.824 49 H 0.065 0.935 50 H 0.097 0.903 51 H 0.142 0.858 52 H 0.138 0.862 53 H 0.139 0.861 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 -1.147 -3.939 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.069 3.931 4 C -0.116 4.116 5 C -0.074 4.074 6 H 0.122 0.878 7 C -0.160 4.160 8 C 0.012 3.988 9 H 0.104 0.896 10 N -0.346 5.346 11 C 0.301 3.699 12 O -0.449 6.449 13 C -0.043 4.043 14 O -0.228 6.228 15 C 0.039 3.961 16 C 0.032 3.968 17 O -0.249 6.249 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.120 4.120 21 C -0.186 4.186 22 O -0.366 6.366 23 Si 0.693 3.307 24 C -0.128 4.128 25 C -0.177 4.177 26 C -0.182 4.182 27 C -0.105 4.105 28 C -0.182 4.182 29 C -0.112 4.112 30 C -0.236 4.236 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.259 0.741 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.245 0.755 45 H -0.231 1.231 46 H -0.206 1.206 47 H 0.176 0.824 48 H 0.193 0.807 49 H 0.084 0.916 50 H 0.116 0.884 51 H 0.159 0.841 52 H 0.156 0.844 53 H 0.157 0.843 54 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.976 -1.206 -2.925 8.581 hybrid contribution 0.102 0.267 0.727 0.781 sum -7.874 -0.939 -2.199 8.229 Atomic orbital electron populations 1.23278 0.76929 1.05392 1.01866 1.86009 1.22831 1.26704 1.88687 1.19077 0.92239 0.84715 0.97110 1.19243 0.90311 0.95985 1.06102 1.21345 0.93559 0.95497 0.97002 0.87774 1.23369 0.93989 1.02514 0.96115 1.21827 0.99888 0.79630 0.97440 0.89622 1.45350 1.12653 1.07348 1.69247 1.20576 0.83560 0.89619 0.76099 1.90771 1.31655 1.71642 1.50847 1.22766 0.85634 0.90857 1.05001 1.86219 1.32994 1.19681 1.83861 1.18595 0.92936 0.82916 1.01677 1.18668 0.86548 0.89943 1.01682 1.86189 1.18467 1.36262 1.84003 1.23279 0.83777 1.00209 1.00110 1.20999 1.01060 0.90266 1.04793 1.20205 0.93623 0.96353 1.01771 1.25268 1.05272 0.91591 0.96430 1.86462 1.48758 1.80153 1.21179 0.93625 0.72773 0.75166 0.89146 1.21012 0.97143 0.94848 0.99769 1.21386 0.97983 0.93784 1.04595 1.23580 0.95478 1.01397 0.97702 1.21102 1.00800 0.90999 0.97619 1.21351 0.94187 0.99216 1.03458 1.21253 0.95141 0.97629 0.97138 1.21496 1.00918 0.92463 1.08740 0.86449 0.92269 0.92060 0.88079 0.89409 0.74148 0.85134 0.85675 0.91962 0.91625 0.87075 0.84175 0.87868 0.75455 1.23132 1.20552 0.82376 0.80682 0.91620 0.88419 0.84072 0.84444 0.84296 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.44 9.43 -92.41 -0.87 -1.32 16 3 C 0.11 0.32 6.66 22.51 0.15 0.47 16 4 C -0.12 -0.19 5.30 -19.77 -0.10 -0.29 16 5 C -0.06 0.09 3.75 -11.02 -0.04 0.05 16 6 H 0.10 -0.20 7.33 -2.39 -0.02 -0.22 16 7 C -0.12 0.42 7.29 31.12 0.23 0.64 16 8 C 0.12 -0.02 4.32 45.51 0.20 0.18 16 9 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 10 N -0.69 1.65 5.26 -440.03 -2.32 -0.67 16 11 C 0.51 2.37 7.91 87.66 0.69 3.06 16 12 O -0.57 -9.64 16.10 15.99 0.26 -9.38 16 13 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 14 O -0.31 -2.87 9.45 -67.02 -0.63 -3.50 16 15 C 0.08 0.51 6.70 22.57 0.15 0.66 16 16 C 0.08 0.66 6.70 22.57 0.15 0.81 16 17 O -0.33 -3.93 10.28 -79.54 -0.82 -4.75 16 18 C 0.02 0.06 9.81 113.37 1.11 1.18 16 19 C -0.15 -0.66 8.60 22.35 0.19 -0.47 16 20 C -0.12 -0.05 5.39 -19.86 -0.11 -0.16 16 21 C -0.08 0.07 2.82 71.24 0.20 0.27 16 22 O -0.56 0.00 12.76 -148.98 -1.90 -1.90 16 23 Si 0.79 -3.14 29.78 68.60 2.04 -1.09 16 24 C -0.11 0.33 8.66 22.28 0.19 0.52 16 25 C -0.16 0.35 9.04 22.35 0.20 0.55 16 26 C -0.14 0.05 7.25 31.12 0.23 0.28 16 27 C -0.09 -0.04 8.62 22.26 0.19 0.15 16 28 C -0.16 -0.06 10.04 22.28 0.22 0.16 16 29 C -0.09 -0.05 10.04 22.25 0.22 0.18 16 30 C -0.22 -0.27 9.04 22.37 0.20 -0.07 16 31 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H 0.06 -0.33 7.66 -2.39 -0.02 -0.35 16 33 H 0.06 -0.37 7.66 -2.39 -0.02 -0.38 16 34 H 0.10 -0.36 7.73 -2.39 -0.02 -0.38 16 35 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 36 H 0.42 -4.05 8.70 -92.71 -0.81 -4.85 16 37 H 0.13 -1.21 7.66 -2.39 -0.02 -1.23 16 38 H 0.13 -1.05 7.66 -2.39 -0.02 -1.06 16 39 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 40 H 0.07 0.04 7.66 -2.39 -0.02 0.03 16 41 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.14 0.43 6.30 -2.91 -0.02 0.41 16 43 H 0.10 0.07 7.96 -2.39 -0.02 0.05 16 44 H 0.40 -3.18 8.70 -74.05 -0.64 -3.83 16 45 H -0.30 -1.24 7.11 99.48 0.71 -0.53 16 46 H -0.28 0.08 7.11 99.48 0.71 0.79 16 47 H 0.16 -1.39 4.87 -2.91 -0.01 -1.41 16 48 H 0.18 -1.83 6.30 -2.91 -0.02 -1.84 16 49 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 50 H 0.10 -0.09 6.30 -2.39 -0.02 -0.10 16 51 H 0.14 -0.39 6.64 -2.91 -0.02 -0.41 16 52 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 53 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 54 H 0.14 -0.33 6.30 -2.91 -0.02 -0.35 16 Total: 0.00 -31.79 439.52 1.08 -30.71 By element: Atomic # 1 Polarization: -17.14 SS G_CDS: -0.45 Total: -17.58 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.77 Total: 9.49 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -2.32 Total: -0.67 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -3.97 Total: -20.85 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.04 Total: -1.09 kcal Total: -31.79 1.08 -30.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_60476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.031 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds