Wall clock time and date at job start Sun Mar 7 2021 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99979 * 2 1 4 4 C 1.39447 * 120.12248 * 179.72088 * 3 2 1 5 5 O 1.34777 * 133.24295 * 359.97438 * 4 3 2 6 6 C 1.34926 * 110.84325 * 180.02562 * 5 4 3 7 7 C 1.46988 * 125.13703 * 179.97438 * 6 5 4 8 8 O 1.21663 * 119.99858 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00624 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00413 * 179.97438 * 9 7 6 11 11 H 1.08992 * 112.85119 * 336.20329 * 10 9 7 12 12 C 1.53787 * 113.60938 * 107.50795 * 10 9 7 13 13 C 1.53778 * 87.08357 * 89.11572 * 12 10 9 14 14 H 1.08992 * 113.61862 * 270.88531 * 13 12 10 15 15 C 1.50695 * 113.68983 * 139.98518 * 13 12 10 16 16 C 1.38715 * 120.02283 * 142.18800 * 15 13 12 17 17 O 1.35900 * 120.05841 * 0.02562 * 16 15 13 18 18 C 1.42905 * 116.99983 * 179.97438 * 17 16 15 19 19 C 1.38760 * 119.88440 * 179.79723 * 16 15 13 20 20 C 1.38122 * 119.94428 * 0.43938 * 19 16 15 21 21 C 1.38284 * 120.05428 * 359.81499 * 20 19 16 22 22 C 1.38165 * 120.03263 * 322.47143 * 15 13 12 23 23 C 1.53781 * 113.61616 * 204.99962 * 10 9 7 24 24 C 1.35811 * 109.71896 * 359.51465 * 6 5 4 25 25 C 1.40610 * 119.13885 * 179.80028 * 4 3 2 26 26 C 1.39787 * 120.11484 * 0.49752 * 25 4 3 27 27 C 1.50699 * 120.09036 * 179.70531 * 26 25 4 28 28 O 1.42898 * 109.47044 * 75.02426 * 27 26 25 29 29 Si 1.86300 * 109.46968 * 195.02337 * 27 26 25 30 30 C 1.36625 * 119.81228 * 359.72652 * 26 25 4 31 31 C 1.38265 * 120.12075 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46558 * 60.00250 * 1 2 3 33 33 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47187 * 300.00202 * 1 2 3 35 35 H 0.97007 * 119.99726 * 0.02562 * 9 7 6 36 36 H 1.08996 * 113.61143 * 203.67084 * 12 10 9 37 37 H 1.09002 * 113.61712 * 334.56627 * 12 10 9 38 38 H 1.08997 * 109.47059 * 299.99937 * 18 17 16 39 39 H 1.09004 * 109.47106 * 59.99843 * 18 17 16 40 40 H 1.08999 * 109.46522 * 179.97438 * 18 17 16 41 41 H 1.08001 * 120.02559 * 180.23451 * 19 16 15 42 42 H 1.08006 * 119.97099 * 179.79209 * 20 19 16 43 43 H 1.08006 * 119.94171 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.97228 * 359.96993 * 22 15 13 45 45 H 1.09004 * 113.60987 * 25.43694 * 23 10 9 46 46 H 1.09001 * 113.61326 * 156.25625 * 23 10 9 47 47 H 1.07998 * 126.95961 * 179.90817 * 24 6 5 48 48 H 1.09001 * 109.47242 * 315.02475 * 27 26 25 49 49 H 0.96701 * 114.00187 * 180.02562 * 28 27 26 50 50 H 1.48497 * 109.99722 * 299.99878 * 29 27 26 51 51 H 1.48499 * 109.99929 * 61.32222 * 29 27 26 52 52 H 1.08006 * 119.74860 * 179.97438 * 30 26 25 53 53 H 1.07999 * 119.66015 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2874 0.0059 5 8 4.4141 0.3574 0.0126 6 6 5.6317 0.9387 0.0169 7 6 6.9130 0.2185 0.0251 8 8 7.9596 0.8389 0.0290 9 7 6.9287 -1.1291 0.0284 10 6 8.2058 -1.8469 0.0360 11 1 9.0269 -1.2541 -0.3669 12 6 8.5287 -2.5151 1.3830 13 6 7.7765 -3.7506 0.8611 14 1 6.7091 -3.7371 1.0808 15 6 8.4325 -5.0575 1.2255 16 6 7.6537 -6.1545 1.5633 17 8 6.2985 -6.0525 1.5656 18 6 5.5604 -7.2228 1.9232 19 6 8.2606 -7.3577 1.8943 20 6 9.6382 -7.4576 1.8954 21 6 10.4124 -6.3609 1.5634 22 6 9.8101 -5.1624 1.2291 23 6 8.1199 -3.2634 -0.5565 24 6 5.4945 2.2898 0.0023 25 6 4.0555 2.5510 0.0015 26 6 3.2765 3.7117 0.0018 27 6 3.9381 5.0657 0.0038 28 8 4.4613 5.3421 -1.2969 29 14 2.6860 6.3679 0.4592 30 6 1.9136 3.6151 0.0008 31 6 1.2957 2.3726 -0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 6.0943 -1.6239 0.0249 36 1 9.5934 -2.6865 1.5411 37 1 8.0450 -2.0369 2.2347 38 1 5.7924 -8.0263 1.2243 39 1 5.8327 -7.5297 2.9331 40 1 4.4931 -7.0047 1.8855 41 1 7.6564 -8.2143 2.1540 42 1 10.1111 -8.3929 2.1562 43 1 11.4895 -6.4410 1.5653 44 1 10.4170 -4.3074 0.9701 45 1 7.3059 -3.3893 -1.2706 46 1 9.0725 -3.6390 -0.9300 47 1 6.2874 3.0231 0.0030 48 1 4.7500 5.0723 0.7310 49 1 4.9027 6.1994 -1.3693 50 1 1.5738 6.3691 -0.5248 51 1 2.1577 6.1098 1.8228 52 1 1.3127 4.5126 0.0015 53 1 0.2174 2.3120 -0.0014 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_6672420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:22 Heat of formation + Delta-G solvation = -38.288505 kcal Electronic energy + Delta-G solvation = -38322.659259 eV Core-core repulsion = 33287.865476 eV Total energy + Delta-G solvation = -5034.793783 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.165 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -43.88137 -41.81926 -41.04018 -40.61555 -39.43551 -39.05393 -38.07973 -37.12379 -34.85742 -33.77907 -32.24813 -31.91625 -31.07078 -31.02980 -28.70564 -28.19022 -26.74370 -26.68797 -26.19407 -24.98505 -24.16926 -23.14381 -22.62369 -22.11926 -21.78953 -20.24027 -19.94550 -19.14467 -18.95423 -18.54682 -18.43843 -17.83834 -17.50219 -17.15981 -17.14533 -16.75153 -16.68538 -16.66360 -16.39938 -15.94448 -15.91298 -15.46844 -15.37394 -15.18835 -15.06621 -14.76697 -14.61278 -14.36767 -14.32536 -14.16584 -14.06305 -14.01178 -13.52595 -13.46902 -13.22737 -13.21229 -13.01402 -12.80398 -12.60831 -12.45330 -12.31803 -12.14845 -12.05279 -11.93181 -11.88262 -11.75188 -11.58245 -11.21197 -11.13451 -10.37446 -10.30080 -9.98033 -9.77626 -9.15340 -9.09239 -4.92761 -0.79596 -0.09112 0.33302 0.47312 0.49720 1.06187 1.28418 1.66895 1.78682 1.79859 1.94575 1.99760 2.21331 2.36072 2.74880 3.04258 3.29800 3.40265 3.41182 3.61887 3.62029 3.64734 3.68012 3.83701 3.89680 3.95593 3.95963 4.02653 4.07383 4.17432 4.17589 4.28622 4.29374 4.31112 4.32693 4.32824 4.43753 4.46437 4.56281 4.64002 4.66895 4.69457 4.69991 4.70725 4.75363 4.77177 4.86618 4.88639 4.97083 5.05147 5.06077 5.09449 5.16589 5.34338 5.39800 5.46872 5.56871 5.62280 5.84917 6.06548 6.18467 6.42352 6.73898 6.90086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.139 3.861 4 C 0.024 3.976 5 O -0.179 6.179 6 C -0.033 4.033 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.688 5.688 10 C 0.114 3.886 11 H 0.105 0.895 12 C -0.138 4.138 13 C -0.061 4.061 14 H 0.091 0.909 15 C -0.116 4.116 16 C 0.110 3.890 17 O -0.333 6.333 18 C 0.020 3.980 19 C -0.217 4.217 20 C -0.093 4.093 21 C -0.161 4.161 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.097 4.097 26 C -0.068 4.068 27 C -0.086 4.086 28 O -0.562 6.562 29 Si 0.783 3.217 30 C -0.106 4.106 31 C -0.170 4.170 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.184 0.816 48 H 0.086 0.914 49 H 0.403 0.597 50 H -0.281 1.281 51 H -0.286 1.286 52 H 0.145 0.855 53 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -0.003 1.212 3.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.025 4.025 5 O -0.081 6.081 6 C -0.083 4.083 7 C 0.393 3.607 8 O -0.416 6.416 9 N -0.338 5.338 10 C 0.010 3.990 11 H 0.123 0.877 12 C -0.176 4.176 13 C -0.079 4.079 14 H 0.110 0.890 15 C -0.117 4.117 16 C 0.065 3.935 17 O -0.247 6.247 18 C -0.074 4.074 19 C -0.236 4.236 20 C -0.111 4.111 21 C -0.180 4.180 22 C -0.102 4.102 23 C -0.161 4.161 24 C -0.124 4.124 25 C -0.098 4.098 26 C -0.069 4.069 27 C -0.195 4.195 28 O -0.372 6.372 29 Si 0.687 3.313 30 C -0.124 4.124 31 C -0.188 4.188 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.201 0.799 48 H 0.104 0.896 49 H 0.255 0.745 50 H -0.208 1.208 51 H -0.212 1.212 52 H 0.162 0.838 53 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.200 -0.361 1.269 3.462 hybrid contribution -0.593 -1.209 0.179 1.359 sum -3.793 -1.571 1.449 4.353 Atomic orbital electron populations 1.23505 0.75298 1.06250 1.02981 1.86152 1.24330 1.25397 1.88373 1.17881 0.86267 0.86652 0.99863 1.19170 0.88210 0.87241 1.07851 1.84023 1.12787 1.34907 1.76422 1.22020 0.83928 0.92827 1.09525 1.16573 0.84920 0.82595 0.76590 1.90889 1.31043 1.68067 1.51643 1.45572 1.10715 1.04890 1.72614 1.22031 0.85688 0.93074 0.98219 0.87669 1.23583 1.02246 0.95049 0.96737 1.21328 0.99528 0.90371 0.96717 0.89028 1.19223 0.93256 0.93998 1.05216 1.19141 0.82881 0.94436 0.97072 1.86028 1.15438 1.38854 1.84398 1.23268 0.96917 0.86730 1.00505 1.21486 0.96759 0.97414 1.07938 1.21269 0.92915 0.99669 0.97205 1.21375 1.01136 0.93075 1.02369 1.21117 0.92838 0.98658 0.97591 1.23404 1.04140 0.92617 0.95968 1.22882 0.94840 0.94500 1.00227 1.19612 0.92982 0.92406 1.04809 1.18887 0.92803 0.93353 1.01860 1.24970 1.06412 0.98704 0.89380 1.86469 1.78295 1.43868 1.28608 0.94033 0.76575 0.84542 0.76138 1.20685 0.93503 0.98257 0.99913 1.21272 1.01759 0.89598 1.06194 0.90922 0.86089 0.90805 0.74849 0.87139 0.91719 0.91908 0.92068 0.86858 0.84348 0.84133 0.84055 0.83519 0.90356 0.86939 0.79913 0.89585 0.74533 1.20784 1.21241 0.83806 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.96 10.50 -93.14 -0.98 -2.94 16 3 C 0.14 1.07 6.70 22.57 0.15 1.22 16 4 C 0.02 0.26 7.35 23.14 0.17 0.43 16 5 O -0.18 -1.99 10.28 -13.40 -0.14 -2.13 16 6 C -0.03 -0.33 7.07 24.00 0.17 -0.16 16 7 C 0.61 5.77 7.80 86.54 0.67 6.44 16 8 O -0.54 -7.72 16.43 -4.23 -0.07 -7.79 16 9 N -0.69 -3.00 5.26 -443.71 -2.33 -5.34 16 10 C 0.11 0.22 4.33 45.52 0.20 0.42 16 11 H 0.11 0.36 7.46 -2.39 -0.02 0.34 16 12 C -0.14 -0.15 7.25 31.12 0.23 0.07 16 13 C -0.06 -0.11 3.75 -11.02 -0.04 -0.15 16 14 H 0.09 0.36 7.32 -2.39 -0.02 0.35 16 15 C -0.12 -0.42 5.30 -19.77 -0.10 -0.53 16 16 C 0.11 0.58 6.66 22.51 0.15 0.73 16 17 O -0.33 -1.70 9.43 -92.42 -0.87 -2.57 16 18 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 19 C -0.22 -0.63 9.04 22.37 0.20 -0.43 16 20 C -0.09 -0.12 10.04 22.25 0.22 0.10 16 21 C -0.16 -0.11 10.04 22.28 0.22 0.12 16 22 C -0.08 -0.08 8.61 22.25 0.19 0.11 16 23 C -0.12 0.07 7.29 31.12 0.23 0.29 16 24 C -0.10 -0.98 10.68 23.79 0.25 -0.73 16 25 C -0.10 -0.98 6.16 -20.24 -0.12 -1.10 16 26 C -0.07 -0.49 5.30 -19.87 -0.11 -0.59 16 27 C -0.09 -0.10 2.70 71.24 0.19 0.10 16 28 O -0.56 -0.82 12.86 -148.98 -1.92 -2.74 16 29 Si 0.78 -2.24 30.20 68.60 2.07 -0.17 16 30 C -0.11 -0.52 8.62 22.02 0.19 -0.33 16 31 C -0.17 -0.56 9.03 22.40 0.20 -0.36 16 32 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 33 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 35 H 0.41 0.91 8.42 -92.70 -0.78 0.13 16 36 H 0.11 -0.17 6.32 -2.39 -0.02 -0.19 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.06 -0.21 7.65 -2.39 -0.02 -0.22 16 39 H 0.06 -0.19 7.67 -2.38 -0.02 -0.20 16 40 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.14 -0.09 6.30 -2.91 -0.02 -0.10 16 42 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 43 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 44 H 0.15 -0.48 6.67 -2.91 -0.02 -0.50 16 45 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 46 H 0.11 -0.30 7.73 -2.39 -0.02 -0.32 16 47 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 49 H 0.40 -3.78 8.74 -74.06 -0.65 -4.42 16 50 H -0.28 -0.64 6.75 99.48 0.67 0.03 16 51 H -0.29 -0.69 7.11 99.48 0.71 0.01 16 52 H 0.14 0.28 4.85 -2.91 -0.01 0.27 16 53 H 0.18 -0.66 6.26 -2.91 -0.02 -0.68 16 Total: 0.00 -24.34 437.56 0.83 -23.50 By element: Atomic # 1 Polarization: -7.21 SS G_CDS: -0.43 Total: -7.63 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.49 Total: 7.80 kcal Atomic # 7 Polarization: -3.00 SS G_CDS: -2.33 Total: -5.34 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -3.97 Total: -18.16 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.07 Total: -0.17 kcal Total: -24.34 0.83 -23.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_6672420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.784 kcal (2) G-P(sol) polarization free energy of solvation -24.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds