Wall clock time and date at job start Sun Mar 7 2021 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00204 * 2 1 4 4 C 1.38713 * 120.05802 * 180.23533 * 3 2 1 5 5 C 1.50696 * 120.02563 * 0.02562 * 4 3 2 6 6 H 1.09000 * 112.85429 * 349.05312 * 5 4 3 7 7 C 1.53779 * 113.61374 * 120.25567 * 5 4 3 8 8 C 1.53782 * 87.08481 * 139.97760 * 7 5 4 9 9 H 1.08995 * 113.61954 * 220.02120 * 8 7 5 10 10 N 1.46498 * 113.61376 * 89.11338 * 8 7 5 11 11 C 1.34771 * 120.00235 * 155.00429 * 10 8 7 12 12 O 1.21706 * 120.00149 * 359.97438 * 11 10 8 13 13 C 1.46591 * 120.00325 * 180.02562 * 11 10 8 14 14 C 1.36648 * 125.45843 * 179.97438 * 13 11 10 15 15 C 1.37467 * 113.29545 * 179.97438 * 14 13 11 16 16 C 1.50706 * 122.44952 * 179.97438 * 15 14 13 17 17 C 1.33816 * 115.10234 * 0.02562 * 15 14 13 18 18 C 1.50697 * 124.52201 * 179.97438 * 17 15 14 19 19 O 1.42900 * 109.47493 * 246.71538 * 18 17 15 20 20 Si 1.86305 * 109.47099 * 126.71552 * 18 17 15 21 21 S 1.70622 * 110.95490 * 359.75768 * 17 15 14 22 22 C 1.53784 * 113.61352 * 217.75144 * 5 4 3 23 23 C 1.38163 * 119.94219 * 180.27405 * 4 3 2 24 24 C 1.38244 * 120.05837 * 359.47193 * 23 4 3 25 25 C 1.38286 * 120.11187 * 0.29838 * 24 23 4 26 26 C 1.38129 * 120.05579 * 359.95428 * 25 24 23 27 27 H 1.09003 * 109.46914 * 299.99451 * 1 2 3 28 28 H 1.09005 * 109.47319 * 59.99675 * 1 2 3 29 29 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09000 * 113.61551 * 254.52676 * 7 5 4 31 31 H 1.09001 * 113.61671 * 25.42661 * 7 5 4 32 32 H 0.97002 * 120.00128 * 335.00100 * 10 8 7 33 33 H 1.08001 * 123.35193 * 359.94402 * 14 13 11 34 34 H 1.08996 * 109.47175 * 95.15001 * 16 15 14 35 35 H 1.08995 * 109.46809 * 215.15436 * 16 15 14 36 36 H 1.09003 * 109.46712 * 335.14626 * 16 15 14 37 37 H 1.08999 * 109.47402 * 6.71911 * 18 17 15 38 38 H 0.96703 * 113.99641 * 300.00499 * 19 18 17 39 39 H 1.48493 * 110.00167 * 180.02562 * 20 18 17 40 40 H 1.48495 * 110.00037 * 301.32110 * 20 18 17 41 41 H 1.09001 * 113.61233 * 334.56458 * 22 5 4 42 42 H 1.09000 * 113.61775 * 105.46938 * 22 5 4 43 43 H 1.07998 * 119.96986 * 179.74400 * 23 4 3 44 44 H 1.07997 * 119.94548 * 180.27103 * 24 23 4 45 45 H 1.08001 * 119.97457 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.02756 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2848 -0.0049 5 6 4.2537 0.0221 -0.0109 6 1 3.6592 -0.8713 0.1800 7 6 5.1803 -0.1037 -1.2317 8 6 6.2407 -0.6663 -0.2704 9 1 7.2497 -0.3087 -0.4755 10 7 6.1730 -2.1207 -0.1081 11 6 7.2715 -2.8095 0.2594 12 8 8.3199 -2.2235 0.4561 13 6 7.2040 -4.2649 0.4213 14 6 8.2448 -5.0709 0.7879 15 6 7.9025 -6.4001 0.8642 16 6 8.8922 -7.4692 1.2496 17 6 6.6264 -6.6754 0.5701 18 6 6.0253 -8.0572 0.5858 19 8 5.6708 -8.4377 -0.7452 20 14 4.5023 -8.0598 1.6588 21 16 5.7692 -5.2524 0.1809 22 6 5.5266 0.1121 0.8473 23 6 4.0560 2.5170 0.0008 24 6 3.3020 3.6757 0.0004 25 6 1.9209 3.6047 0.0005 26 6 1.2914 2.3753 0.0001 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.8335 -0.8263 -1.9705 31 1 5.4549 0.8548 -1.6721 32 1 5.3376 -2.5879 -0.2652 33 1 9.2377 -4.7005 0.9965 34 1 8.8129 -7.6696 2.3180 35 1 8.6778 -8.3808 0.6920 36 1 9.9019 -7.1303 1.0173 37 1 6.7519 -8.7650 0.9847 38 1 5.0261 -7.8507 -1.1635 39 1 3.9004 -9.4170 1.6831 40 1 4.8520 -7.6350 3.0381 41 1 5.8959 1.1296 0.9753 42 1 5.4594 -0.4362 1.7870 43 1 5.1344 2.5751 0.0012 44 1 3.7923 4.6380 0.0005 45 1 1.3340 4.5114 0.0007 46 1 0.2128 2.3204 -0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_6739946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:27 Heat of formation + Delta-G solvation = -16.340093 kcal Electronic energy + Delta-G solvation = -28947.238302 eV Core-core repulsion = 24896.365185 eV Total energy + Delta-G solvation = -4050.873117 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.77776 -40.93270 -39.96076 -39.20403 -38.02336 -37.55357 -34.74710 -32.60326 -31.68988 -31.01992 -29.87753 -28.14809 -27.24657 -26.68570 -25.80466 -24.40066 -23.09559 -22.57863 -21.99225 -20.41349 -19.93977 -19.54917 -18.98337 -17.84981 -17.45256 -17.36334 -17.00181 -16.63215 -16.59784 -16.25934 -16.11515 -15.75062 -15.43904 -15.32343 -15.12332 -14.86783 -14.84336 -14.36850 -14.29268 -14.22660 -14.00375 -13.49865 -13.47510 -13.20595 -13.17150 -13.00511 -12.96196 -12.73012 -12.46497 -12.29336 -12.24762 -11.98579 -11.95929 -11.76162 -11.64389 -11.30258 -11.15453 -10.78902 -10.25914 -9.75076 -9.70654 -9.43758 -9.04349 -5.18536 -0.71313 0.29393 0.37031 0.51570 0.67934 1.04300 1.24245 1.58363 1.86896 1.92424 2.02117 2.41911 2.78613 3.34760 3.46744 3.54239 3.62930 3.68619 3.73932 3.94390 4.01319 4.04198 4.12685 4.16094 4.21613 4.35861 4.38556 4.41241 4.43018 4.48366 4.51289 4.62504 4.68877 4.72349 4.76375 4.77654 4.80925 4.86137 4.92607 4.95504 5.02284 5.12233 5.15972 5.23236 5.33459 5.42996 5.45037 5.61179 5.67357 5.88256 6.31297 6.47605 6.58683 6.98812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.114 3.886 4 C -0.115 4.115 5 C -0.058 4.058 6 H 0.102 0.898 7 C -0.124 4.124 8 C 0.116 3.884 9 H 0.094 0.906 10 N -0.696 5.696 11 C 0.593 3.407 12 O -0.569 6.569 13 C -0.285 4.285 14 C -0.057 4.057 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.240 4.240 18 C -0.038 4.038 19 O -0.545 6.545 20 Si 0.758 3.242 21 S 0.277 5.723 22 C -0.142 4.142 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.094 4.094 26 C -0.217 4.217 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.394 0.606 39 H -0.274 1.274 40 H -0.283 1.283 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 0.858 -1.584 7.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.116 4.116 5 C -0.076 4.076 6 H 0.120 0.880 7 C -0.161 4.161 8 C 0.011 3.989 9 H 0.112 0.888 10 N -0.347 5.347 11 C 0.381 3.619 12 O -0.449 6.449 13 C -0.406 4.406 14 C -0.091 4.091 15 C -0.126 4.126 16 C -0.161 4.161 17 C -0.360 4.360 18 C -0.149 4.149 19 O -0.353 6.353 20 Si 0.660 3.340 21 S 0.546 5.454 22 C -0.180 4.180 23 C -0.104 4.104 24 C -0.182 4.182 25 C -0.112 4.112 26 C -0.236 4.236 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.248 0.752 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.244 0.756 39 H -0.200 1.200 40 H -0.210 1.210 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.850 0.600 -1.064 7.944 hybrid contribution 1.671 -0.361 0.541 1.793 sum -6.179 0.239 -0.523 6.205 Atomic orbital electron populations 1.23287 0.76911 1.05445 1.01836 1.86015 1.22844 1.26672 1.88655 1.19087 0.92250 0.84754 0.97065 1.19219 0.90303 0.95896 1.06193 1.21348 0.93667 0.95564 0.97009 0.88031 1.23397 0.94013 1.02610 0.96127 1.21913 1.00386 0.78889 0.97750 0.88816 1.45437 1.12171 1.07859 1.69192 1.17136 0.83633 0.85230 0.75942 1.90829 1.31028 1.70575 1.52505 1.24535 1.00887 0.96972 1.18180 1.20746 0.99864 0.91866 0.96649 1.18809 0.94910 0.95113 1.03772 1.20646 0.97297 0.95998 1.02146 1.24729 0.99218 1.02421 1.09651 1.24767 1.07324 0.90846 0.91991 1.86549 1.66142 1.55625 1.27016 0.94243 0.78309 0.83452 0.77982 1.82275 1.07933 0.92578 1.62568 1.23589 0.95326 1.01536 0.97555 1.21100 1.00849 0.90913 0.97567 1.21349 0.94168 0.99217 1.03478 1.21256 0.95170 0.97614 0.97142 1.21493 1.00908 0.92436 1.08737 0.92276 0.92088 0.86371 0.89685 0.87602 0.75242 0.83522 0.90306 0.90682 0.90589 0.85681 0.75605 1.20011 1.20954 0.87919 0.91633 0.83935 0.84417 0.84324 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.45 9.43 -92.36 -0.87 -1.32 16 3 C 0.11 0.31 6.66 22.51 0.15 0.46 16 4 C -0.12 -0.18 5.30 -19.77 -0.10 -0.29 16 5 C -0.06 0.06 3.75 -11.01 -0.04 0.02 16 6 H 0.10 -0.09 7.32 -2.39 -0.02 -0.10 16 7 C -0.12 0.35 7.29 31.12 0.23 0.58 16 8 C 0.12 0.06 4.32 45.52 0.20 0.25 16 9 H 0.09 0.37 7.46 -2.39 -0.02 0.35 16 10 N -0.70 -0.56 5.26 -444.08 -2.33 -2.89 16 11 C 0.59 4.18 7.78 86.42 0.67 4.85 16 12 O -0.57 -8.67 16.44 -4.37 -0.07 -8.74 16 13 C -0.29 -1.09 6.45 24.08 0.16 -0.93 16 14 C -0.06 -0.28 9.78 21.72 0.21 -0.07 16 15 C -0.11 -0.26 5.78 -21.05 -0.12 -0.39 16 16 C -0.10 0.05 9.48 71.24 0.68 0.72 16 17 C -0.24 0.11 4.83 24.68 0.12 0.22 16 18 C -0.04 0.07 2.77 71.24 0.20 0.27 16 19 O -0.55 0.95 12.88 -148.98 -1.92 -0.97 16 20 Si 0.76 -2.46 32.12 68.60 2.20 -0.26 16 21 S 0.28 -1.04 20.82 -56.49 -1.18 -2.22 16 22 C -0.14 0.04 7.25 31.12 0.23 0.26 16 23 C -0.09 -0.01 8.61 22.25 0.19 0.18 16 24 C -0.16 -0.01 10.04 22.28 0.22 0.22 16 25 C -0.09 -0.03 10.04 22.26 0.22 0.20 16 26 C -0.22 -0.24 9.04 22.37 0.20 -0.04 16 27 H 0.06 -0.34 7.66 -2.39 -0.02 -0.36 16 28 H 0.06 -0.37 7.66 -2.38 -0.02 -0.39 16 29 H 0.12 -1.04 8.14 -2.39 -0.02 -1.05 16 30 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.11 -0.40 7.72 -2.39 -0.02 -0.42 16 32 H 0.41 -1.75 7.81 -92.71 -0.72 -2.48 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.07 -0.09 6.99 -2.39 -0.02 -0.10 16 36 H 0.08 -0.08 8.10 -2.39 -0.02 -0.10 16 37 H 0.13 -0.20 6.25 -2.39 -0.01 -0.21 16 38 H 0.39 -3.90 8.70 -74.06 -0.64 -4.55 16 39 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 40 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 41 H 0.10 -0.17 6.31 -2.39 -0.02 -0.18 16 42 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.14 -0.49 6.66 -2.91 -0.02 -0.50 16 44 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 45 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 46 H 0.14 -0.35 6.30 -2.91 -0.02 -0.37 16 Total: 0.00 -20.09 391.85 0.05 -20.04 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: -0.30 Total: -11.18 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.52 Total: 7.54 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -2.33 Total: -2.89 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -2.86 Total: -11.03 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.20 Total: -0.26 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -1.18 Total: -2.22 kcal Total: -20.09 0.05 -20.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_6739946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.698 kcal (2) G-P(sol) polarization free energy of solvation -20.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds