Wall clock time and date at job start Sun Mar 7 2021 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99996 * 2 1 4 4 C 1.38703 * 120.05545 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.02922 * 0.02562 * 4 3 2 6 6 H 1.08998 * 112.84762 * 10.91494 * 5 4 3 7 7 C 1.53778 * 113.61779 * 142.22346 * 5 4 3 8 8 C 1.53776 * 87.08496 * 139.98057 * 7 5 4 9 9 H 1.08995 * 113.69415 * 220.00851 * 8 7 5 10 10 N 1.46499 * 113.61564 * 89.11232 * 8 7 5 11 11 C 1.34784 * 119.99893 * 107.50591 * 10 8 7 12 12 O 1.21633 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.47192 * 119.99823 * 179.72690 * 11 10 8 14 14 C 1.36010 * 123.46231 * 0.02766 * 13 11 10 15 15 S 1.70446 * 110.81615 * 180.02562 * 14 13 11 16 16 C 1.75508 * 92.44474 * 359.97438 * 15 14 13 17 17 C 1.50705 * 124.71241 * 180.02562 * 16 15 14 18 18 O 1.42889 * 109.47251 * 244.97504 * 17 16 15 19 19 Si 1.86301 * 109.46875 * 4.97733 * 17 16 15 20 20 C 1.32769 * 110.57383 * 359.71540 * 16 15 14 21 21 C 1.53782 * 87.08225 * 334.56955 * 8 7 5 22 22 C 1.38173 * 119.94542 * 179.72408 * 4 3 2 23 23 C 1.38242 * 120.05053 * 0.23456 * 22 4 3 24 24 C 1.38284 * 120.11557 * 0.02562 * 23 22 4 25 25 C 1.38118 * 120.05734 * 359.97354 * 24 23 22 26 26 H 1.09000 * 109.47228 * 299.99826 * 1 2 3 27 27 H 1.09003 * 109.47266 * 60.00001 * 1 2 3 28 28 H 1.09003 * 109.47589 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61538 * 25.42857 * 7 5 4 30 30 H 1.09000 * 113.61379 * 254.52927 * 7 5 4 31 31 H 0.97005 * 120.00261 * 287.50803 * 10 8 7 32 32 H 1.08000 * 124.58912 * 359.96007 * 14 13 11 33 33 H 1.09000 * 109.46673 * 124.97452 * 17 16 15 34 34 H 0.96700 * 114.00415 * 60.00154 * 18 17 16 35 35 H 1.48498 * 110.00093 * 58.67884 * 19 17 16 36 36 H 1.48501 * 109.99816 * 179.97438 * 19 17 16 37 37 H 1.08004 * 123.45660 * 180.28698 * 20 16 15 38 38 H 1.08997 * 113.61994 * 139.97967 * 21 8 7 39 39 H 1.09002 * 113.61268 * 270.80184 * 21 8 7 40 40 H 1.07998 * 119.97056 * 180.25377 * 22 4 3 41 41 H 1.08006 * 119.94165 * 180.02562 * 23 22 4 42 42 H 1.08004 * 119.97339 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.02872 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2848 0.0005 5 6 4.2537 0.0221 0.0005 6 1 3.6584 -0.8708 -0.1901 7 6 5.5234 0.1141 -0.8621 8 6 6.2415 -0.6668 0.2511 9 1 7.2515 -0.3109 0.4543 10 7 6.1732 -2.1209 0.0859 11 6 7.2705 -2.8090 -0.2873 12 8 8.3172 -2.2226 -0.4873 13 6 7.2034 -4.2706 -0.4475 14 6 6.0726 -4.9968 -0.2382 15 16 6.3576 -6.6545 -0.5142 16 6 8.0410 -6.3738 -0.9237 17 6 9.0207 -7.4509 -1.3129 18 8 10.0476 -7.5410 -0.3234 19 14 8.1319 -9.0836 -1.4360 20 6 8.3299 -5.0801 -0.8494 21 6 5.1848 -0.1065 1.2177 22 6 4.0560 2.5171 -0.0052 23 6 3.3018 3.6757 -0.0066 24 6 1.9208 3.6047 -0.0017 25 6 1.2914 2.3753 0.0040 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.8922 1.1319 -0.9892 30 1 5.4527 -0.4321 -1.8027 31 1 5.3383 -2.5885 0.2450 32 1 5.1231 -4.5798 0.0632 33 1 9.4657 -7.2059 -2.2772 34 1 9.7232 -7.7567 0.5617 35 1 7.0407 -8.9935 -2.4391 36 1 9.0869 -10.1541 -1.8198 37 1 9.3078 -4.6750 -1.0639 38 1 4.8406 -0.8307 1.9561 39 1 5.4616 0.8503 1.6604 40 1 5.1344 2.5751 -0.0090 41 1 3.7922 4.6381 -0.0116 42 1 1.3339 4.5114 -0.0024 43 1 0.2128 2.3204 0.0074 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:32 Heat of formation + Delta-G solvation = -14.753311 kcal Electronic energy + Delta-G solvation = -26775.954560 eV Core-core repulsion = 22880.687870 eV Total energy + Delta-G solvation = -3895.266690 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77841 -40.90184 -39.61183 -38.65539 -38.04059 -37.03832 -34.59434 -32.22025 -31.33368 -31.08064 -28.29548 -26.97831 -26.71896 -26.62950 -25.24189 -23.18186 -22.63837 -22.08777 -20.53161 -20.17696 -19.12243 -18.87256 -18.11759 -17.61358 -17.37191 -16.85246 -16.72757 -16.64315 -16.30343 -15.86303 -15.68261 -15.40421 -15.34685 -15.13709 -14.86021 -14.46283 -14.28427 -14.11428 -14.04540 -13.70342 -13.62401 -13.46424 -13.10602 -13.07036 -12.83955 -12.65775 -12.33440 -12.25590 -12.10340 -11.92399 -11.74744 -11.67496 -11.16250 -10.87696 -10.59780 -10.10418 -10.00073 -9.76705 -9.49534 -9.07586 -5.22279 -0.36247 0.33349 0.34090 0.49326 0.67964 0.92405 1.17367 1.54927 1.85754 2.09717 2.29122 2.37732 2.75791 3.32470 3.45390 3.57470 3.64624 3.70691 3.84002 3.86213 3.94774 3.99414 4.04520 4.13895 4.16709 4.18568 4.28133 4.39633 4.40436 4.43316 4.51769 4.64536 4.68679 4.71315 4.73446 4.84142 4.92575 5.01109 5.04462 5.06802 5.17159 5.22643 5.39114 5.48276 5.58782 5.66372 5.81373 6.40502 6.46572 6.48336 7.24396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.103 4.103 5 C -0.063 4.063 6 H 0.101 0.899 7 C -0.145 4.145 8 C 0.121 3.879 9 H 0.107 0.893 10 N -0.708 5.708 11 C 0.581 3.419 12 O -0.530 6.530 13 C -0.155 4.155 14 C -0.205 4.205 15 S 0.195 5.805 16 C -0.244 4.244 17 C -0.026 4.026 18 O -0.533 6.533 19 Si 0.656 3.344 20 C -0.052 4.052 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.154 4.154 24 C -0.083 4.083 25 C -0.207 4.207 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.171 0.829 33 H 0.124 0.876 34 H 0.381 0.619 35 H -0.238 1.238 36 H -0.233 1.233 37 H 0.156 0.844 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 -1.458 2.696 7.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.104 4.104 5 C -0.082 4.082 6 H 0.119 0.881 7 C -0.183 4.183 8 C 0.015 3.985 9 H 0.125 0.875 10 N -0.359 5.359 11 C 0.367 3.633 12 O -0.407 6.407 13 C -0.173 4.173 14 C -0.343 4.343 15 S 0.462 5.538 16 C -0.361 4.361 17 C -0.139 4.139 18 O -0.339 6.339 19 Si 0.555 3.445 20 C -0.082 4.082 21 C -0.173 4.173 22 C -0.098 4.098 23 C -0.172 4.172 24 C -0.102 4.102 25 C -0.226 4.226 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.235 0.765 32 H 0.189 0.811 33 H 0.141 0.859 34 H 0.228 0.772 35 H -0.162 1.162 36 H -0.156 1.156 37 H 0.174 0.826 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.263 -3.073 1.597 7.157 hybrid contribution 0.025 1.992 -0.235 2.006 sum -6.238 -1.081 1.362 6.476 Atomic orbital electron populations 1.23079 0.78225 1.04105 1.01443 1.86039 1.21405 1.26826 1.88653 1.18857 0.91803 0.84258 0.96657 1.19034 0.90106 0.95359 1.05871 1.21401 0.93990 0.95840 0.96921 0.88067 1.23591 0.95183 1.01390 0.98162 1.21853 1.00566 0.79474 0.96567 0.87491 1.45509 1.12790 1.07411 1.70238 1.17603 0.83490 0.85859 0.76387 1.90823 1.29477 1.70406 1.49974 1.20243 0.93798 0.94111 1.09196 1.25794 1.02587 1.00118 1.05806 1.83027 1.04262 1.03521 1.63027 1.24791 0.98999 0.99276 1.13010 1.24446 0.91392 1.03392 0.94662 1.86544 1.32700 1.93494 1.21147 0.95140 0.81889 0.77520 0.89958 1.21054 0.99189 0.90909 0.97005 1.23438 0.95271 1.02233 0.96383 1.20889 1.00079 0.91008 0.97811 1.21086 0.93935 0.98530 1.03640 1.20978 0.94792 0.97048 0.97340 1.21263 1.00110 0.92430 1.08758 0.92571 0.92608 0.88114 0.88625 0.90763 0.76540 0.81142 0.85857 0.77161 1.16157 1.15565 0.82616 0.90577 0.88330 0.85190 0.85736 0.85756 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.32 -0.36 9.43 -19.42 -0.18 -0.55 16 3 C 0.13 0.22 6.66 -39.22 -0.26 -0.04 16 4 C -0.10 -0.12 5.30 -104.47 -0.55 -0.67 16 5 C -0.06 0.01 3.75 -90.96 -0.34 -0.33 16 6 H 0.10 0.00 7.32 -51.93 -0.38 -0.38 16 7 C -0.14 0.00 7.25 -25.92 -0.19 -0.19 16 8 C 0.12 0.03 4.32 -67.12 -0.29 -0.26 16 9 H 0.11 0.19 7.46 -51.93 -0.39 -0.20 16 10 N -0.71 -0.14 5.23 -54.17 -0.28 -0.42 16 11 C 0.58 1.80 7.79 -12.62 -0.10 1.70 16 12 O -0.53 -3.72 16.40 5.25 0.09 -3.63 16 13 C -0.16 -0.23 5.98 -104.63 -0.63 -0.85 16 14 C -0.20 0.25 10.38 29.93 0.31 0.56 16 15 S 0.20 -0.33 20.20 -107.50 -2.17 -2.51 16 16 C -0.24 -0.02 5.65 -36.18 -0.20 -0.22 16 17 C -0.03 0.01 2.94 36.01 0.11 0.12 16 18 O -0.53 -0.11 12.88 -35.23 -0.45 -0.56 16 19 Si 0.66 -0.97 30.92 -169.99 -5.26 -6.23 16 20 C -0.05 -0.10 9.95 -39.02 -0.39 -0.49 16 21 C -0.14 0.13 7.29 -25.92 -0.19 -0.05 16 22 C -0.08 -0.03 8.61 -39.60 -0.34 -0.37 16 23 C -0.15 -0.06 10.04 -39.56 -0.40 -0.46 16 24 C -0.08 -0.04 10.04 -39.61 -0.40 -0.44 16 25 C -0.21 -0.18 9.04 -39.43 -0.36 -0.54 16 26 H 0.06 -0.14 7.65 -51.93 -0.40 -0.54 16 27 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 28 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 29 H 0.10 -0.05 6.31 -51.93 -0.33 -0.38 16 30 H 0.07 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.40 -0.90 7.20 -40.82 -0.29 -1.20 16 32 H 0.17 -0.69 7.01 -52.49 -0.37 -1.05 16 33 H 0.12 -0.01 7.96 -51.93 -0.41 -0.43 16 34 H 0.38 -1.43 8.70 45.56 0.40 -1.03 16 35 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 36 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 37 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.10 -0.13 7.73 -51.93 -0.40 -0.53 16 40 H 0.13 -0.16 6.66 -52.49 -0.35 -0.51 16 41 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 42 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 43 H 0.13 -0.11 6.30 -52.49 -0.33 -0.44 16 LS Contribution 370.67 15.07 5.59 5.59 Total: 0.00 -8.23 370.67 -11.29 -19.52 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: -5.39 Total: -9.61 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.22 Total: -1.60 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.28 Total: -0.42 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.55 Total: -4.75 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.26 Total: -6.23 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.17 Total: -2.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -8.23 -11.29 -19.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.767 kcal (2) G-P(sol) polarization free energy of solvation -8.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds