Wall clock time and date at job start Sun Mar 7 2021 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99996 * 2 1 4 4 C 1.38703 * 120.05545 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.02922 * 0.02562 * 4 3 2 6 6 H 1.08998 * 112.84762 * 10.91494 * 5 4 3 7 7 C 1.53778 * 113.61779 * 142.22346 * 5 4 3 8 8 C 1.53776 * 87.08496 * 139.98057 * 7 5 4 9 9 H 1.08995 * 113.69415 * 220.00851 * 8 7 5 10 10 N 1.46499 * 113.61564 * 89.11232 * 8 7 5 11 11 C 1.34784 * 119.99893 * 107.50591 * 10 8 7 12 12 O 1.21633 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.47192 * 119.99823 * 179.72690 * 11 10 8 14 14 C 1.36010 * 123.46231 * 0.02766 * 13 11 10 15 15 S 1.70446 * 110.81615 * 180.02562 * 14 13 11 16 16 C 1.75508 * 92.44474 * 359.97438 * 15 14 13 17 17 C 1.50705 * 124.71241 * 180.02562 * 16 15 14 18 18 O 1.42889 * 109.47251 * 244.97504 * 17 16 15 19 19 Si 1.86301 * 109.46875 * 4.97733 * 17 16 15 20 20 C 1.32769 * 110.57383 * 359.71540 * 16 15 14 21 21 C 1.53782 * 87.08225 * 334.56955 * 8 7 5 22 22 C 1.38173 * 119.94542 * 179.72408 * 4 3 2 23 23 C 1.38242 * 120.05053 * 0.23456 * 22 4 3 24 24 C 1.38284 * 120.11557 * 0.02562 * 23 22 4 25 25 C 1.38118 * 120.05734 * 359.97354 * 24 23 22 26 26 H 1.09000 * 109.47228 * 299.99826 * 1 2 3 27 27 H 1.09003 * 109.47266 * 60.00001 * 1 2 3 28 28 H 1.09003 * 109.47589 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61538 * 25.42857 * 7 5 4 30 30 H 1.09000 * 113.61379 * 254.52927 * 7 5 4 31 31 H 0.97005 * 120.00261 * 287.50803 * 10 8 7 32 32 H 1.08000 * 124.58912 * 359.96007 * 14 13 11 33 33 H 1.09000 * 109.46673 * 124.97452 * 17 16 15 34 34 H 0.96700 * 114.00415 * 60.00154 * 18 17 16 35 35 H 1.48498 * 110.00093 * 58.67884 * 19 17 16 36 36 H 1.48501 * 109.99816 * 179.97438 * 19 17 16 37 37 H 1.08004 * 123.45660 * 180.28698 * 20 16 15 38 38 H 1.08997 * 113.61994 * 139.97967 * 21 8 7 39 39 H 1.09002 * 113.61268 * 270.80184 * 21 8 7 40 40 H 1.07998 * 119.97056 * 180.25377 * 22 4 3 41 41 H 1.08006 * 119.94165 * 180.02562 * 23 22 4 42 42 H 1.08004 * 119.97339 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.02872 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4310 1.2848 0.0005 5 6 4.2537 0.0221 0.0005 6 1 3.6584 -0.8708 -0.1901 7 6 5.5234 0.1141 -0.8621 8 6 6.2415 -0.6668 0.2511 9 1 7.2515 -0.3109 0.4543 10 7 6.1732 -2.1209 0.0859 11 6 7.2705 -2.8090 -0.2873 12 8 8.3172 -2.2226 -0.4873 13 6 7.2034 -4.2706 -0.4475 14 6 6.0726 -4.9968 -0.2382 15 16 6.3576 -6.6545 -0.5142 16 6 8.0410 -6.3738 -0.9237 17 6 9.0207 -7.4509 -1.3129 18 8 10.0476 -7.5410 -0.3234 19 14 8.1319 -9.0836 -1.4360 20 6 8.3299 -5.0801 -0.8494 21 6 5.1848 -0.1065 1.2177 22 6 4.0560 2.5171 -0.0052 23 6 3.3018 3.6757 -0.0066 24 6 1.9208 3.6047 -0.0017 25 6 1.2914 2.3753 0.0040 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.8922 1.1319 -0.9892 30 1 5.4527 -0.4321 -1.8027 31 1 5.3383 -2.5885 0.2450 32 1 5.1231 -4.5798 0.0632 33 1 9.4657 -7.2059 -2.2772 34 1 9.7232 -7.7567 0.5617 35 1 7.0407 -8.9935 -2.4391 36 1 9.0869 -10.1541 -1.8198 37 1 9.3078 -4.6750 -1.0639 38 1 4.8406 -0.8307 1.9561 39 1 5.4616 0.8503 1.6604 40 1 5.1344 2.5751 -0.0090 41 1 3.7922 4.6381 -0.0116 42 1 1.3339 4.5114 -0.0024 43 1 0.2128 2.3204 0.0074 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:31 Heat of formation + Delta-G solvation = -12.433385 kcal Electronic energy + Delta-G solvation = -26775.853961 eV Core-core repulsion = 22880.687870 eV Total energy + Delta-G solvation = -3895.166090 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.81200 -40.97503 -39.63481 -38.70017 -38.03439 -37.09417 -34.72202 -32.22470 -31.33287 -31.05259 -28.16717 -26.97775 -26.71276 -26.66642 -25.27090 -23.15906 -22.64128 -22.16224 -20.60293 -20.20020 -19.09774 -18.84405 -18.18448 -17.61756 -17.35516 -16.87351 -16.67473 -16.64488 -16.33192 -16.00620 -15.76036 -15.36193 -15.32151 -15.13700 -14.84447 -14.47933 -14.31202 -14.12231 -14.04482 -13.70595 -13.64522 -13.45457 -13.13336 -12.99438 -12.77351 -12.63288 -12.31289 -12.28810 -12.02337 -11.94937 -11.76493 -11.65399 -11.17603 -11.07927 -10.58248 -10.22324 -10.00205 -9.76848 -9.43846 -9.07755 -5.13838 -0.34954 0.33970 0.38809 0.48360 0.69015 0.81220 1.22351 1.60811 1.90514 2.03689 2.22944 2.37857 2.75619 3.39387 3.45721 3.65274 3.66145 3.69614 3.87967 3.91531 3.96973 3.99827 4.09978 4.18761 4.26923 4.32221 4.36974 4.40737 4.45492 4.48332 4.63166 4.69625 4.70679 4.73360 4.77834 4.82689 4.93012 4.99288 4.99449 5.09579 5.15439 5.16971 5.40203 5.46061 5.58771 5.65281 5.85094 6.43306 6.43900 6.69364 7.11801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.055 4.055 6 H 0.101 0.899 7 C -0.142 4.142 8 C 0.117 3.883 9 H 0.089 0.911 10 N -0.694 5.694 11 C 0.578 3.422 12 O -0.582 6.582 13 C -0.183 4.183 14 C -0.190 4.190 15 S 0.256 5.744 16 C -0.249 4.249 17 C -0.038 4.038 18 O -0.552 6.552 19 Si 0.744 3.256 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.163 4.163 24 C -0.093 4.093 25 C -0.217 4.217 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.203 0.797 33 H 0.113 0.887 34 H 0.397 0.603 35 H -0.256 1.256 36 H -0.273 1.273 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 -2.148 3.468 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.074 4.074 6 H 0.119 0.881 7 C -0.181 4.181 8 C 0.011 3.989 9 H 0.107 0.893 10 N -0.345 5.345 11 C 0.365 3.635 12 O -0.464 6.464 13 C -0.201 4.201 14 C -0.329 4.329 15 S 0.522 5.478 16 C -0.366 4.366 17 C -0.150 4.150 18 O -0.361 6.361 19 Si 0.645 3.355 20 C -0.106 4.106 21 C -0.160 4.160 22 C -0.105 4.105 23 C -0.182 4.182 24 C -0.111 4.111 25 C -0.236 4.236 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.219 0.781 33 H 0.131 0.869 34 H 0.247 0.753 35 H -0.182 1.182 36 H -0.199 1.199 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.465 -3.748 2.400 9.563 hybrid contribution 0.662 2.170 -0.497 2.322 sum -7.802 -1.579 1.903 8.185 Atomic orbital electron populations 1.23282 0.76918 1.05373 1.01898 1.86011 1.22850 1.26746 1.88698 1.19082 0.92232 0.84742 0.97149 1.19235 0.90327 0.95942 1.06205 1.21321 0.93570 0.95477 0.96999 0.88110 1.23576 0.95470 1.01446 0.97562 1.21857 1.00039 0.79518 0.97482 0.89320 1.45396 1.12688 1.07420 1.68966 1.17926 0.83262 0.86655 0.75665 1.90787 1.31421 1.71497 1.52658 1.20072 0.94781 0.93313 1.11946 1.26176 1.02802 1.00545 1.03348 1.82831 1.01566 1.02252 1.61144 1.24909 1.00650 0.98622 1.12406 1.24712 0.91524 1.04481 0.94290 1.86503 1.33537 1.93649 1.22372 0.94186 0.79140 0.73868 0.88304 1.20978 0.98819 0.91981 0.98786 1.23375 0.94043 1.02537 0.96074 1.21102 1.00826 0.90953 0.97589 1.21356 0.94183 0.99208 1.03406 1.21258 0.95148 0.97626 0.97082 1.21494 1.00917 0.92430 1.08711 0.92006 0.92246 0.86499 0.88154 0.91859 0.74892 0.78051 0.86948 0.75277 1.18186 1.19867 0.85100 0.89688 0.87822 0.84020 0.84355 0.84221 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.67 9.43 -92.40 -0.87 -1.54 16 3 C 0.11 0.38 6.66 22.51 0.15 0.53 16 4 C -0.12 -0.27 5.30 -19.77 -0.10 -0.38 16 5 C -0.06 0.02 3.75 -11.01 -0.04 -0.02 16 6 H 0.10 -0.03 7.32 -2.39 -0.02 -0.04 16 7 C -0.14 -0.12 7.25 31.12 0.23 0.10 16 8 C 0.12 0.17 4.32 45.52 0.20 0.36 16 9 H 0.09 0.49 7.46 -2.39 -0.02 0.48 16 10 N -0.69 -0.66 5.23 -443.52 -2.32 -2.98 16 11 C 0.58 4.56 7.79 86.59 0.67 5.23 16 12 O -0.58 -10.03 16.40 -4.13 -0.07 -10.10 16 13 C -0.18 -0.69 5.98 -19.87 -0.12 -0.81 16 14 C -0.19 0.72 10.38 67.30 0.70 1.42 16 15 S 0.26 -1.30 20.20 -56.49 -1.14 -2.44 16 16 C -0.25 -0.14 5.65 24.51 0.14 0.00 16 17 C -0.04 0.00 2.94 71.24 0.21 0.21 16 18 O -0.55 -0.72 12.88 -148.98 -1.92 -2.64 16 19 Si 0.74 -2.53 30.92 68.60 2.12 -0.41 16 20 C -0.08 -0.44 9.95 22.67 0.23 -0.21 16 21 C -0.12 0.26 7.29 31.12 0.23 0.49 16 22 C -0.09 -0.08 8.61 22.26 0.19 0.11 16 23 C -0.16 -0.10 10.04 22.28 0.22 0.13 16 24 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 25 C -0.22 -0.34 9.04 22.37 0.20 -0.14 16 26 H 0.06 -0.35 7.65 -2.39 -0.02 -0.36 16 27 H 0.06 -0.31 7.67 -2.39 -0.02 -0.33 16 28 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.10 -0.03 6.31 -2.39 -0.02 -0.04 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.41 -2.17 7.20 -92.70 -0.67 -2.83 16 32 H 0.20 -2.19 7.01 -2.91 -0.02 -2.21 16 33 H 0.11 0.17 7.96 -2.39 -0.02 0.15 16 34 H 0.40 -2.90 8.70 -74.06 -0.64 -3.55 16 35 H -0.26 0.06 7.11 99.48 0.71 0.76 16 36 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 37 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.10 -0.29 7.73 -2.39 -0.02 -0.31 16 40 H 0.14 -0.35 6.66 -2.91 -0.02 -0.37 16 41 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 42 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 43 H 0.14 -0.29 6.30 -2.91 -0.02 -0.31 16 Total: 0.00 -21.84 370.67 0.03 -21.81 By element: Atomic # 1 Polarization: -9.71 SS G_CDS: -0.21 Total: -9.92 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.43 Total: 8.22 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -2.32 Total: -2.98 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -2.86 Total: -14.27 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.12 Total: -0.41 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -1.14 Total: -2.44 kcal Total: -21.84 0.03 -21.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.374 kcal (2) G-P(sol) polarization free energy of solvation -21.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds