Wall clock time and date at job start Sun Mar 7 2021 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47146 * 2 1 4 4 H 1.48499 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47005 * 299.99291 * 3 2 1 6 6 H 1.48498 * 109.47320 * 59.99748 * 3 2 1 7 7 C 1.50708 * 109.46632 * 119.99724 * 2 1 3 8 8 C 1.38396 * 119.83089 * 65.00479 * 7 2 1 9 9 C 1.37886 * 120.17505 * 180.02562 * 8 7 2 10 10 C 1.39845 * 119.82330 * 359.97023 * 9 8 7 11 11 C 1.47209 * 120.16725 * 179.97438 * 10 9 8 12 12 C 1.34811 * 119.99697 * 180.02562 * 11 10 9 13 13 C 1.46423 * 119.99787 * 180.02562 * 12 11 10 14 14 O 1.21707 * 120.00332 * 4.95080 * 13 12 11 15 15 N 1.34778 * 120.00206 * 184.95366 * 13 12 11 16 16 C 1.45506 * 118.60827 * 174.13943 * 15 13 12 17 17 C 1.53530 * 108.56617 * 118.24089 * 16 15 13 18 18 S 1.81889 * 108.09466 * 58.44886 * 17 16 15 19 19 O 1.42099 * 110.70086 * 197.77230 * 18 17 16 20 20 O 1.42103 * 110.86040 * 60.35367 * 18 17 16 21 21 N 1.66782 * 103.16358 * 309.03131 * 18 17 16 22 22 C 1.49551 * 116.52036 * 224.45561 * 21 18 17 23 23 C 1.56346 * 103.97964 * 237.80705 * 22 21 18 24 24 C 1.50318 * 108.22954 * 35.48795 * 23 22 21 25 25 C 1.51503 * 107.89200 * 262.74783 * 24 23 22 26 26 C 1.48440 * 114.99022 * 91.45921 * 25 24 23 27 27 C 1.44308 * 119.23101 * 45.48766 * 21 18 17 28 28 C 1.39830 * 119.65795 * 0.26023 * 10 9 8 29 29 C 1.37891 * 119.82690 * 359.52987 * 28 10 9 30 30 H 0.96695 * 114.00151 * 300.00465 * 1 2 3 31 31 H 1.08995 * 109.47477 * 239.99630 * 2 1 3 32 32 H 1.08002 * 119.91431 * 359.97438 * 8 7 2 33 33 H 1.07997 * 120.09176 * 179.97438 * 9 8 7 34 34 H 1.07994 * 119.99895 * 0.02562 * 11 10 9 35 35 H 1.07996 * 119.99891 * 0.02562 * 12 11 10 36 36 H 1.08991 * 109.82191 * 358.45515 * 16 15 13 37 37 H 1.09003 * 109.71670 * 237.96117 * 16 15 13 38 38 H 1.08999 * 109.73706 * 298.80067 * 17 16 15 39 39 H 1.09000 * 109.73458 * 178.10095 * 17 16 15 40 40 H 1.09000 * 110.52150 * 356.37008 * 22 21 18 41 41 H 1.09002 * 110.52515 * 118.96164 * 22 21 18 42 42 H 1.08998 * 109.66736 * 275.81813 * 23 22 21 43 43 H 1.08996 * 109.73182 * 155.19102 * 23 22 21 44 44 H 1.09000 * 109.78702 * 143.12705 * 24 23 22 45 45 H 1.08998 * 109.78602 * 22.35928 * 24 23 22 46 46 H 1.09005 * 108.37432 * 212.87947 * 25 24 23 47 47 H 1.08990 * 108.38445 * 330.02453 * 25 24 23 48 48 H 1.09005 * 109.96131 * 59.55771 * 26 25 24 49 49 H 1.08997 * 109.96351 * 180.84940 * 26 25 24 50 50 H 1.09001 * 109.33288 * 194.46613 * 27 21 18 51 51 H 1.08008 * 120.08287 * 179.72738 * 28 10 9 52 52 H 1.08010 * 119.91114 * 180.21277 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7564 0.0006 5 1 1.5551 2.4564 -1.2126 6 1 1.5550 2.4565 1.2124 7 6 1.9312 -0.7104 1.2306 8 6 1.6824 -2.0618 1.3951 9 6 2.1381 -2.7187 2.5185 10 6 2.8540 -2.0159 3.4927 11 6 3.3437 -2.7096 4.6953 12 6 4.0330 -2.0285 5.6325 13 6 4.5205 -2.7186 6.8284 14 8 4.3827 -3.9232 6.9346 15 7 5.1218 -2.0199 7.8116 16 6 5.4783 -2.7123 9.0407 17 6 7.0026 -2.6490 9.2130 18 16 7.4941 -0.8983 9.2544 19 8 8.8859 -0.7612 9.0028 20 8 6.8728 -0.2238 10.3400 21 7 6.7610 -0.2657 7.8965 22 6 7.5934 0.6449 7.0511 23 6 6.7783 1.9786 7.0170 24 6 6.1161 2.1593 8.3543 25 6 4.6908 1.6587 8.2393 26 6 4.4979 0.2293 8.5901 27 6 5.3848 -0.5991 7.6186 28 6 3.0972 -0.6496 3.3215 29 6 2.6386 -0.0078 2.1905 30 1 -0.3933 0.4417 0.7650 31 1 1.7924 -0.5139 -0.8899 32 1 1.1290 -2.6032 0.6420 33 1 1.9428 -3.7733 2.6457 34 1 3.1506 -3.7639 4.8267 35 1 4.2257 -0.9741 5.5012 36 1 5.1602 -3.7533 8.9841 37 1 4.9945 -2.2283 9.8891 38 1 7.4889 -3.1481 8.3749 39 1 7.2879 -3.1337 10.1467 40 1 8.5692 0.8059 7.5094 41 1 7.7069 0.2365 6.0469 42 1 6.0205 1.9255 6.2354 43 1 7.4495 2.8152 6.8231 44 1 6.1156 3.2148 8.6263 45 1 6.6493 1.5838 9.1109 46 1 4.0611 2.2612 8.8940 47 1 4.3554 1.8090 7.2132 48 1 4.8096 0.0535 9.6198 49 1 3.4509 -0.0467 8.4650 50 1 5.1474 -0.3246 6.5908 51 1 3.6456 -0.0991 4.0717 52 1 2.8287 1.0468 2.0552 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784524_12360594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:47:10 Heat of formation + Delta-G solvation = -62.796235 kcal Electronic energy + Delta-G solvation = -36697.405917 eV Core-core repulsion = 32063.905371 eV Total energy + Delta-G solvation = -4633.500546 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 394.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.83619 -40.59192 -39.81834 -38.40533 -37.79129 -37.34033 -36.85976 -35.20666 -34.18709 -33.28373 -32.29066 -32.00247 -31.00173 -27.37045 -26.99107 -26.37103 -25.29606 -24.06843 -23.27546 -22.49204 -21.82790 -21.37309 -20.59993 -19.43258 -19.22277 -18.44776 -18.35428 -17.45732 -17.41355 -17.13217 -16.96389 -16.67235 -16.56145 -16.25463 -16.06007 -16.01590 -15.66349 -15.24656 -15.21002 -15.08828 -14.84125 -14.65302 -14.33669 -14.23055 -14.18576 -13.82255 -13.78760 -13.61812 -13.45047 -13.35490 -13.24520 -13.22898 -13.04946 -13.02943 -12.49295 -12.21296 -12.13748 -12.02049 -11.85282 -11.69663 -11.53185 -11.51554 -11.44483 -11.38001 -11.35257 -11.10560 -10.39489 -10.37085 -10.01917 -9.96444 -9.27432 -0.96031 -0.59743 0.40663 0.81872 1.20287 1.23467 1.48521 1.55153 1.67457 1.95721 2.07424 2.51328 2.81267 2.94901 3.13705 3.24580 3.48158 3.56199 3.62720 3.72506 3.74723 3.81220 3.83902 3.96264 3.99256 4.03234 4.06442 4.15226 4.23191 4.28223 4.36138 4.45916 4.48161 4.54574 4.56728 4.62325 4.63224 4.74753 4.79167 4.85160 4.88260 4.99297 5.06295 5.07437 5.08921 5.12039 5.28378 5.29993 5.35189 5.37542 5.40982 5.49703 5.51856 5.57985 5.62821 5.91161 6.04128 6.71784 6.87170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.085 4.085 3 Si 0.981 3.019 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.109 4.109 8 C -0.104 4.104 9 C -0.098 4.098 10 C -0.085 4.085 11 C -0.001 4.001 12 C -0.225 4.225 13 C 0.557 3.443 14 O -0.569 6.569 15 N -0.621 5.621 16 C 0.112 3.888 17 C -0.623 4.623 18 S 2.587 3.413 19 O -0.988 6.988 20 O -0.969 6.969 21 N -0.990 5.990 22 C 0.111 3.889 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.151 4.151 27 C 0.365 3.635 28 C -0.091 4.091 29 C -0.135 4.135 30 H 0.389 0.611 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.095 0.905 50 H 0.148 0.852 51 H 0.156 0.844 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 3.145 -3.562 5.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.085 4.085 11 C -0.021 4.021 12 C -0.245 4.245 13 C 0.350 3.650 14 O -0.449 6.449 15 N -0.355 5.355 16 C -0.012 4.012 17 C -0.756 4.756 18 S 2.684 3.316 19 O -0.978 6.978 20 O -0.958 6.958 21 N -0.832 5.832 22 C -0.011 4.011 23 C -0.171 4.171 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.192 4.192 27 C 0.175 3.825 28 C -0.109 4.109 29 C -0.153 4.153 30 H 0.238 0.762 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.163 0.837 39 H 0.183 0.817 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.165 0.835 51 H 0.174 0.826 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.526 3.545 -3.428 5.162 hybrid contribution -0.215 -1.087 0.558 1.240 sum -1.742 2.459 -2.870 4.161 Atomic orbital electron populations 1.86505 1.17451 1.81952 1.50147 1.25102 0.84954 1.11023 0.98428 0.85228 0.79837 0.74344 0.80024 1.17735 1.20823 1.16832 1.20627 0.98465 0.95060 0.96786 1.21106 0.99154 0.94010 0.97969 1.21651 0.96008 1.00770 0.93150 1.19083 1.00511 0.94194 0.94728 1.22431 0.89951 0.99584 0.90112 1.23003 1.05075 1.02078 0.94356 1.18745 0.76636 0.86212 0.83395 1.90836 1.58338 1.15712 1.80063 1.48122 1.60419 1.10693 1.16227 1.21221 0.90031 1.02530 0.87467 1.30835 1.06447 1.24389 1.13910 1.05563 0.73614 0.78031 0.74387 1.93574 1.32758 1.86519 1.84956 1.93596 1.77176 1.70811 1.54230 1.57771 1.20214 1.61196 1.44049 1.23178 0.93205 0.88619 0.96132 1.22357 1.00519 0.96446 0.97805 1.20986 0.96886 1.00782 0.98110 1.20463 0.96585 0.94779 1.03215 1.22190 1.00593 0.96185 1.00198 1.21104 0.80347 0.77447 1.03629 1.21607 0.98292 0.93269 0.97710 1.21210 0.99108 1.00523 0.94438 0.76161 0.86030 0.84862 0.84322 0.85454 0.81859 0.86707 0.87609 0.83709 0.81711 0.88989 0.87755 0.88670 0.90272 0.92003 0.93003 0.92390 0.89676 0.90764 0.88612 0.83528 0.82627 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.23 12.83 -148.98 -1.91 -0.68 16 2 C -0.08 0.36 2.80 71.24 0.20 0.56 16 3 Si 0.98 -4.64 25.12 68.60 1.72 -2.92 16 4 H -0.25 1.04 7.11 99.48 0.71 1.75 16 5 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 6 H -0.24 1.43 7.04 99.48 0.70 2.13 16 7 C -0.11 0.39 5.36 -19.79 -0.11 0.28 16 8 C -0.10 0.27 9.66 22.22 0.21 0.48 16 9 C -0.10 0.29 9.80 22.58 0.22 0.51 16 10 C -0.09 0.32 5.87 -20.15 -0.12 0.20 16 11 C 0.00 0.00 9.46 23.84 0.23 0.23 16 12 C -0.23 1.09 8.67 23.62 0.20 1.29 16 13 C 0.56 0.37 7.55 86.37 0.65 1.03 16 14 O -0.57 -4.92 15.45 -4.37 -0.07 -4.99 16 15 N -0.62 1.68 2.60 -815.99 -2.12 -0.45 16 16 C 0.11 -0.25 6.04 86.74 0.52 0.28 16 17 C -0.62 1.97 6.80 72.16 0.49 2.46 16 18 S 2.59 4.48 5.20 -56.49 -0.29 4.19 16 19 O -0.99 -8.31 16.18 -127.68 -2.07 -10.37 16 20 O -0.97 -6.40 14.31 -127.68 -1.83 -8.22 16 21 N -0.99 3.29 1.85 -491.84 -0.91 2.39 16 22 C 0.11 -0.61 6.72 86.95 0.58 -0.02 16 23 C -0.13 1.02 5.87 30.89 0.18 1.20 16 24 C -0.13 0.39 5.54 29.24 0.16 0.55 16 25 C -0.11 0.66 5.07 28.66 0.15 0.81 16 26 C -0.15 0.75 5.16 30.00 0.15 0.91 16 27 C 0.36 -2.17 2.38 131.50 0.31 -1.86 16 28 C -0.09 0.59 9.41 22.57 0.21 0.81 16 29 C -0.14 0.74 8.65 22.23 0.19 0.93 16 30 H 0.39 -3.39 8.70 -74.06 -0.64 -4.04 16 31 H 0.12 -0.63 7.96 -2.39 -0.02 -0.65 16 32 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 33 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 34 H 0.13 -0.10 7.53 -2.91 -0.02 -0.12 16 35 H 0.16 -1.94 3.83 -2.91 -0.01 -1.95 16 36 H 0.11 -0.01 6.79 -2.39 -0.02 -0.02 16 37 H 0.11 -0.47 7.68 -2.39 -0.02 -0.49 16 38 H 0.14 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.17 -1.19 8.14 -2.39 -0.02 -1.21 16 40 H 0.09 -0.16 6.59 -2.39 -0.02 -0.18 16 41 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.09 -1.18 7.03 -2.39 -0.02 -1.19 16 43 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.05 0.11 4.52 -2.39 -0.01 0.10 16 46 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 47 H 0.08 -0.92 7.03 -2.39 -0.02 -0.94 16 48 H 0.07 -0.03 5.76 -2.38 -0.01 -0.04 16 49 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 50 H 0.15 -1.72 5.02 -2.39 -0.01 -1.73 16 51 H 0.16 -1.98 6.17 -2.91 -0.02 -2.00 16 52 H 0.14 -1.16 4.84 -2.91 -0.01 -1.18 16 Total: 0.00 -24.18 398.16 -1.94 -26.12 By element: Atomic # 1 Polarization: -16.79 SS G_CDS: 1.08 Total: -15.71 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.45 Total: 10.64 kcal Atomic # 7 Polarization: 4.97 SS G_CDS: -3.03 Total: 1.94 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -5.87 Total: -24.27 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 1.72 Total: -2.92 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -0.29 Total: 4.19 kcal Total: -24.18 -1.94 -26.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784524_12360594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.672 kcal (2) G-P(sol) polarization free energy of solvation -24.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds