Wall clock time and date at job start Sun Mar 7 2021 08:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.47252 * 2 1 4 4 C 1.50700 * 109.47244 * 119.99822 * 2 1 3 5 5 C 1.35453 * 126.06924 * 244.97981 * 4 2 1 6 6 N 1.35530 * 108.87120 * 179.78459 * 5 4 2 7 7 C 1.37650 * 108.64426 * 0.37779 * 6 5 4 8 8 C 1.46680 * 126.23323 * 179.88937 * 7 6 5 9 9 O 1.21693 * 120.00097 * 179.68702 * 8 7 6 10 10 N 1.34777 * 119.99703 * 359.68376 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72441 * 10 8 7 12 12 H 1.08998 * 112.85361 * 336.47110 * 11 10 8 13 13 C 1.53778 * 113.61557 * 107.77998 * 11 10 8 14 14 C 1.53785 * 87.08457 * 139.98112 * 13 11 10 15 15 H 1.09000 * 113.69324 * 89.12487 * 14 13 11 16 16 C 1.50698 * 113.61716 * 220.02618 * 14 13 11 17 17 C 1.38231 * 120.00102 * 37.21596 * 16 14 13 18 18 C 1.38235 * 119.99937 * 179.81668 * 17 16 14 19 19 C 1.38234 * 120.00031 * 0.39658 * 18 17 16 20 20 C 1.38242 * 120.00091 * 359.86061 * 19 18 17 21 21 C 1.38233 * 119.99696 * 217.49581 * 16 14 13 22 22 C 1.53786 * 113.61394 * 205.27970 * 11 10 8 23 23 C 1.37870 * 107.53222 * 359.62212 * 7 6 5 24 24 H 0.96704 * 113.99751 * 300.00319 * 1 2 3 25 25 H 1.08994 * 109.47072 * 239.99730 * 2 1 3 26 26 H 1.48506 * 109.99865 * 300.00076 * 3 2 1 27 27 H 1.48498 * 109.99743 * 61.31538 * 3 2 1 28 28 H 1.08005 * 125.56063 * 0.05066 * 5 4 2 29 29 H 0.97003 * 125.68028 * 180.26145 * 6 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.08997 * 113.61721 * 254.52733 * 13 11 10 32 32 H 1.09004 * 113.61436 * 25.43627 * 13 11 10 33 33 H 1.08004 * 120.00451 * 0.02562 * 17 16 14 34 34 H 1.08003 * 120.00239 * 180.23316 * 18 17 16 35 35 H 1.07997 * 120.00350 * 179.83430 * 19 18 17 36 36 H 1.07990 * 120.00007 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00097 * 359.97438 * 21 16 14 38 38 H 1.08999 * 113.61272 * 334.56869 * 22 11 10 39 39 H 1.08999 * 113.61438 * 105.38707 * 22 11 10 40 40 H 1.08001 * 126.45430 * 180.25781 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6338 -0.1499 2.2440 6 7 2.9015 -1.1019 3.1708 7 6 2.3691 -2.2963 2.7412 8 6 2.4367 -3.5798 3.4480 9 8 1.9188 -4.5690 2.9640 10 7 3.0725 -3.6635 4.6334 11 6 3.1348 -4.9441 5.3422 12 1 2.3318 -5.6244 5.0587 13 6 4.5293 -5.5920 5.3224 14 6 4.2785 -5.9910 6.7862 15 1 3.7893 -6.9585 6.8989 16 6 5.4909 -5.8419 7.6688 17 6 6.3575 -4.7818 7.4795 18 6 7.4676 -4.6430 8.2915 19 6 7.7154 -5.5689 9.2876 20 6 6.8517 -6.6321 9.4735 21 6 5.7395 -6.7686 8.6639 22 6 3.3104 -4.7985 6.8631 23 6 1.7554 -2.0652 1.5284 24 1 -0.3933 0.4418 0.7651 25 1 1.7923 -0.5138 -0.8899 26 1 1.5615 2.4679 -1.2085 27 1 1.5879 2.4585 1.2242 28 1 2.9284 0.8874 2.3057 29 1 3.3888 -0.9647 3.9982 30 1 3.4850 -2.8750 5.0194 31 1 4.6061 -6.4425 4.6451 32 1 5.3417 -4.8759 5.1981 33 1 6.1656 -4.0600 6.6993 34 1 8.1427 -3.8126 8.1461 35 1 8.5841 -5.4620 9.9203 36 1 7.0455 -7.3557 10.2513 37 1 5.0646 -7.5992 8.8091 38 1 3.7895 -3.8655 7.1599 39 1 2.4027 -5.0071 7.4294 40 1 1.2361 -2.7933 0.9229 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:20 Heat of formation + Delta-G solvation = 31.456192 kcal Electronic energy + Delta-G solvation = -22816.856272 eV Core-core repulsion = 19371.461170 eV Total energy + Delta-G solvation = -3445.395101 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49490 -41.33659 -40.05917 -38.64592 -37.79419 -34.92365 -32.60048 -31.87294 -31.66783 -30.61182 -26.91966 -26.73426 -25.89820 -24.09118 -23.55080 -22.21319 -21.34918 -20.86461 -20.52056 -19.66883 -18.23028 -17.58416 -17.24721 -16.75667 -16.53399 -16.40161 -16.00869 -15.80750 -15.57402 -15.35715 -14.92445 -14.65324 -14.46599 -14.27730 -14.15220 -13.96546 -13.85937 -13.48374 -13.45597 -13.15454 -12.56869 -12.45075 -12.33373 -11.85357 -11.80295 -11.69967 -11.49740 -11.22425 -10.47641 -10.24305 -9.96583 -9.81352 -9.55618 -9.29482 -4.82908 0.34937 0.43633 0.50585 1.39932 1.55337 1.68507 1.93674 2.09998 2.15150 2.24095 2.83813 3.41962 3.56436 3.64770 3.69780 3.79394 3.91347 3.98718 4.04711 4.14226 4.16870 4.18025 4.29545 4.35882 4.54190 4.61910 4.66323 4.70249 4.74986 4.81300 4.89614 4.94133 4.99701 5.02698 5.08452 5.15713 5.19639 5.45837 5.58829 5.59128 5.65064 5.72103 5.74938 6.12831 6.35303 6.51946 6.63578 7.05201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.062 4.062 3 Si 0.790 3.210 4 C -0.224 4.224 5 C 0.061 3.939 6 N -0.514 5.514 7 C -0.069 4.069 8 C 0.588 3.412 9 O -0.577 6.577 10 N -0.703 5.703 11 C 0.119 3.881 12 H 0.098 0.902 13 C -0.141 4.141 14 C -0.068 4.068 15 H 0.103 0.897 16 C -0.077 4.077 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.384 0.616 25 H 0.107 0.893 26 H -0.315 1.315 27 H -0.266 1.266 28 H 0.214 0.786 29 H 0.437 0.563 30 H 0.412 0.588 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 5.428 5.645 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.693 3.307 4 C -0.230 4.230 5 C -0.078 4.078 6 N -0.112 5.112 7 C -0.182 4.182 8 C 0.377 3.623 9 O -0.457 6.457 10 N -0.353 5.353 11 C 0.014 3.986 12 H 0.116 0.884 13 C -0.179 4.179 14 C -0.086 4.086 15 H 0.122 0.878 16 C -0.077 4.077 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.132 4.132 24 H 0.233 0.767 25 H 0.125 0.875 26 H -0.243 1.243 27 H -0.192 1.192 28 H 0.231 0.769 29 H 0.279 0.721 30 H 0.249 0.751 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.746 5.181 4.965 9.193 hybrid contribution -0.957 -0.339 0.757 1.266 sum 4.789 4.842 5.723 8.896 Atomic orbital electron populations 1.86574 1.19502 1.80559 1.49980 1.24774 0.82577 1.12322 0.97342 0.94247 0.89364 0.70313 0.76729 1.19872 1.08835 0.94262 1.00060 1.22379 1.00518 0.95890 0.88984 1.41846 1.43094 1.06352 1.19862 1.20120 1.11880 0.86739 0.99479 1.17311 0.77542 0.86474 0.80963 1.90847 1.48833 1.38028 1.67951 1.45695 1.56361 1.12994 1.20284 1.22539 0.98348 0.85385 0.92294 0.88365 1.23599 0.97396 1.01108 0.95803 1.21296 0.93809 0.99844 0.93693 0.87830 1.19781 0.96253 0.95336 0.96335 1.21214 0.94701 0.98265 0.99975 1.21446 0.97914 0.99649 0.95570 1.21462 1.00115 0.95161 0.98879 1.21426 0.95020 0.98613 0.99851 1.21319 0.98099 0.99564 0.95928 1.23406 0.99867 0.99053 0.93649 1.21237 1.00324 0.96641 0.95030 0.76683 0.87489 1.24333 1.19205 0.76941 0.72125 0.75107 0.91679 0.88264 0.84472 0.84506 0.85012 0.85083 0.85292 0.87832 0.89934 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.85 12.88 -148.98 -1.92 -4.77 16 2 C -0.06 -0.03 3.02 71.24 0.22 0.19 16 3 Si 0.79 -3.60 30.60 68.60 2.10 -1.50 16 4 C -0.22 -0.05 5.43 -20.12 -0.11 -0.16 16 5 C 0.06 -0.41 10.45 83.48 0.87 0.46 16 6 N -0.51 3.68 5.99 -183.62 -1.10 2.58 16 7 C -0.07 -0.16 7.06 40.35 0.28 0.13 16 8 C 0.59 3.27 7.79 86.45 0.67 3.94 16 9 O -0.58 -9.03 16.48 -4.33 -0.07 -9.10 16 10 N -0.70 1.97 5.35 -444.00 -2.38 -0.40 16 11 C 0.12 -0.19 4.24 45.52 0.19 0.00 16 12 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 13 C -0.14 0.34 7.25 31.12 0.23 0.56 16 14 C -0.07 0.22 3.98 -11.01 -0.04 0.18 16 15 H 0.10 -0.34 8.09 -2.39 -0.02 -0.36 16 16 C -0.08 0.08 5.29 -19.87 -0.11 -0.03 16 17 C -0.12 0.29 8.62 22.27 0.19 0.48 16 18 C -0.13 0.19 10.05 22.27 0.22 0.42 16 19 C -0.14 0.03 10.05 22.27 0.22 0.26 16 20 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 21 C -0.13 -0.04 9.71 22.27 0.22 0.18 16 22 C -0.12 0.67 7.30 31.13 0.23 0.90 16 23 C -0.11 -0.66 10.59 22.57 0.24 -0.42 16 24 H 0.38 -0.54 8.70 -74.05 -0.64 -1.18 16 25 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 26 H -0.31 -1.57 7.11 99.48 0.71 -0.87 16 27 H -0.27 0.92 7.11 99.48 0.71 1.62 16 28 H 0.21 -3.10 6.21 -2.91 -0.02 -3.12 16 29 H 0.44 -6.63 8.19 -92.71 -0.76 -7.38 16 30 H 0.41 -4.29 7.86 -92.71 -0.73 -5.02 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.10 -0.44 6.30 -2.39 -0.02 -0.46 16 33 H 0.14 -0.93 6.64 -2.91 -0.02 -0.95 16 34 H 0.14 -0.73 8.06 -2.91 -0.02 -0.76 16 35 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 36 H 0.13 -0.33 8.06 -2.92 -0.02 -0.35 16 37 H 0.13 -0.28 8.05 -2.91 -0.02 -0.30 16 38 H 0.10 -0.86 7.71 -2.39 -0.02 -0.88 16 39 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.12 1.32 8.06 -2.91 -0.02 1.30 16 Total: 0.00 -24.49 338.07 -0.62 -25.11 By element: Atomic # 1 Polarization: -18.17 SS G_CDS: -1.00 Total: -19.17 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 3.75 Total: 7.26 kcal Atomic # 7 Polarization: 5.65 SS G_CDS: -3.48 Total: 2.18 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.99 Total: -13.87 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.10 Total: -1.50 kcal Total: -24.49 -0.62 -25.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.566 kcal (2) G-P(sol) polarization free energy of solvation -24.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds