Wall clock time and date at job start Sun Mar 7 2021 08:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35530 * 125.67441 * 2 1 4 4 C 1.35458 * 108.86962 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.06663 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47262 * 119.96954 * 5 4 3 7 7 Si 1.86298 * 109.47283 * 359.96702 * 5 4 3 8 8 C 1.39831 * 107.86271 * 359.97438 * 4 3 2 9 9 C 1.37643 * 125.67667 * 179.69627 * 2 1 3 10 10 C 1.46684 * 126.23577 * 0.02562 * 9 2 1 11 11 O 1.21691 * 119.99643 * 5.47341 * 10 9 2 12 12 N 1.34774 * 119.99727 * 185.47692 * 10 9 2 13 13 C 1.46504 * 119.99448 * 185.20476 * 12 10 9 14 14 H 1.09002 * 112.85203 * 25.33186 * 13 12 10 15 15 C 1.53783 * 113.61049 * 156.52691 * 13 12 10 16 16 C 1.53785 * 87.07885 * 139.97841 * 15 13 12 17 17 H 1.09009 * 113.61399 * 89.20225 * 16 15 13 18 18 C 1.50702 * 113.61714 * 220.01442 * 16 15 13 19 19 C 1.38238 * 119.99613 * 59.72784 * 18 16 15 20 20 C 1.38231 * 119.99684 * 179.76303 * 19 18 16 21 21 C 1.38237 * 120.00395 * 0.49247 * 20 19 18 22 22 C 1.38236 * 119.99581 * 359.78464 * 21 20 19 23 23 C 1.38231 * 120.00183 * 240.00033 * 18 16 15 24 24 C 1.53780 * 113.61600 * 254.13262 * 13 12 10 25 25 H 1.08998 * 109.47246 * 85.97591 * 1 2 3 26 26 H 1.09002 * 109.46922 * 325.97518 * 1 2 3 27 27 H 1.09004 * 109.46984 * 205.97674 * 1 2 3 28 28 H 1.07998 * 125.56967 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46689 * 239.96977 * 5 4 3 30 30 H 0.96703 * 114.00195 * 179.97438 * 6 5 4 31 31 H 1.48505 * 109.99928 * 60.00426 * 7 5 4 32 32 H 1.48499 * 109.99883 * 181.31980 * 7 5 4 33 33 H 1.07999 * 126.45842 * 180.02562 * 8 4 3 34 34 H 0.96998 * 120.00473 * 5.20198 * 12 10 9 35 35 H 1.08994 * 113.61537 * 254.52435 * 15 13 12 36 36 H 1.08999 * 113.61941 * 25.34891 * 15 13 12 37 37 H 1.07994 * 119.99759 * 0.02562 * 19 18 16 38 38 H 1.07998 * 119.99778 * 180.24868 * 20 19 18 39 39 H 1.07991 * 120.00104 * 179.76308 * 21 20 19 40 40 H 1.07994 * 119.99832 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00061 * 0.02562 * 23 18 16 42 42 H 1.09008 * 113.60924 * 334.57325 * 24 13 12 43 43 H 1.09002 * 113.61736 * 105.46719 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 4.7537 1.6190 0.0013 6 8 5.5391 1.3697 1.1688 7 14 4.1887 3.3942 0.0003 8 6 3.5780 -0.6887 0.0015 9 6 2.2678 -1.1181 0.0059 10 6 1.8124 -2.5124 0.0128 11 8 0.6263 -2.7655 -0.0869 12 7 2.7077 -3.5131 0.1296 13 6 2.2671 -4.9062 0.0221 14 1 1.3538 -5.0175 -0.5625 15 6 3.3862 -5.8758 -0.3931 16 6 2.7959 -6.8679 0.6230 17 1 2.0277 -7.5175 0.2033 18 6 3.8392 -7.6245 1.4041 19 6 4.7501 -6.9384 2.1854 20 6 5.7040 -7.6327 2.9057 21 6 5.7534 -9.0124 2.8369 22 6 4.8461 -9.6981 2.0512 23 6 3.8888 -9.0042 1.3350 24 6 2.2300 -5.6463 1.3696 25 1 -0.3634 0.0721 -1.0251 26 1 -0.3633 0.8517 0.5750 27 1 -0.3633 -0.9239 0.4501 28 1 1.9082 2.1236 -0.0004 29 1 5.3542 1.4283 -0.8882 30 1 6.3309 1.9209 1.2352 31 1 3.3688 3.6669 1.2081 32 1 5.3640 4.3013 -0.0311 33 1 4.4583 -1.3144 0.0026 34 1 3.6436 -3.3110 0.2847 35 1 3.3107 -6.2128 -1.4268 36 1 4.3855 -5.5261 -0.1339 37 1 4.7139 -5.8602 2.2362 38 1 6.4131 -7.0969 3.5193 39 1 6.5011 -9.5545 3.3967 40 1 4.8849 -10.7760 1.9971 41 1 3.1801 -9.5399 0.7208 42 1 2.9126 -5.2342 2.1129 43 1 1.2225 -5.7981 1.7568 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:22 Heat of formation + Delta-G solvation = 41.260074 kcal Electronic energy + Delta-G solvation = -25016.364465 eV Core-core repulsion = 21415.856873 eV Total energy + Delta-G solvation = -3600.507592 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55536 -41.31852 -40.01435 -38.61628 -37.76699 -35.04771 -33.85534 -31.98534 -31.73816 -30.69587 -28.37126 -26.72438 -26.30445 -25.52485 -23.89776 -23.52010 -22.16638 -21.17840 -20.76449 -19.99308 -18.63410 -18.35888 -18.16719 -17.24174 -16.81767 -16.69139 -16.43298 -15.94635 -15.73129 -15.53069 -15.34734 -15.06483 -14.90273 -14.47577 -14.29822 -14.16889 -14.03589 -13.94182 -13.58041 -13.47009 -13.23833 -13.19027 -13.05446 -12.55191 -12.50318 -12.30800 -11.93487 -11.81419 -11.67146 -11.46738 -11.08002 -10.37896 -10.17021 -9.81724 -9.66975 -9.55490 -9.25650 -4.87041 0.38128 0.43800 0.50225 1.34581 1.54651 1.59799 1.69110 2.02958 2.25745 2.32619 2.83609 3.44091 3.53559 3.64628 3.70793 3.73692 3.92379 3.94366 4.00921 4.05156 4.13535 4.15848 4.18497 4.29441 4.37592 4.42194 4.54569 4.61611 4.63989 4.68382 4.71444 4.73218 4.78281 4.82118 4.96255 5.00592 5.10026 5.16469 5.18725 5.22472 5.49025 5.58963 5.64410 5.66706 5.74491 5.89146 6.12597 6.15371 6.44963 6.71460 7.09440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.413 5.413 3 C 0.032 3.968 4 C -0.182 4.182 5 C -0.047 4.047 6 O -0.560 6.560 7 Si 0.763 3.237 8 C -0.113 4.113 9 C -0.080 4.080 10 C 0.588 3.412 11 O -0.582 6.582 12 N -0.697 5.697 13 C 0.125 3.875 14 H 0.103 0.897 15 C -0.122 4.122 16 C -0.066 4.066 17 H 0.108 0.892 18 C -0.077 4.077 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.143 4.143 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.199 0.801 29 H 0.089 0.911 30 H 0.392 0.608 31 H -0.297 1.297 32 H -0.290 1.290 33 H 0.157 0.843 34 H 0.414 0.586 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.091 0.909 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 1.500 -2.730 3.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.085 5.085 3 C -0.105 4.105 4 C -0.188 4.188 5 C -0.157 4.157 6 O -0.369 6.369 7 Si 0.669 3.331 8 C -0.139 4.139 9 C -0.192 4.192 10 C 0.377 3.623 11 O -0.464 6.464 12 N -0.347 5.347 13 C 0.020 3.980 14 H 0.121 0.879 15 C -0.160 4.160 16 C -0.084 4.084 17 H 0.127 0.873 18 C -0.077 4.077 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.181 4.181 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.215 0.785 29 H 0.107 0.893 30 H 0.242 0.758 31 H -0.225 1.225 32 H -0.217 1.217 33 H 0.175 0.825 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.110 0.890 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.484 1.591 -2.316 2.851 hybrid contribution 1.412 -0.204 0.935 1.706 sum 1.896 1.387 -1.380 2.724 Atomic orbital electron populations 1.22444 0.74725 1.05715 1.04986 1.44002 1.07693 1.04737 1.52042 1.22221 0.89800 0.92526 1.05954 1.18907 0.92989 0.94114 1.12811 1.24241 0.92625 1.08863 0.89940 1.86553 1.41085 1.64944 1.44358 0.94423 0.81287 0.71774 0.85666 1.21409 0.94379 0.95140 1.02975 1.20107 0.90898 0.87689 1.20532 1.17199 0.85387 0.84233 0.75447 1.90767 1.17530 1.85308 1.52787 1.45580 1.11580 1.05162 1.72379 1.22543 0.99281 0.78330 0.97850 0.87870 1.23395 0.98352 0.94092 1.00185 1.21337 0.96394 0.94591 0.96126 0.87345 1.19798 0.96554 0.93718 0.97619 1.21201 0.95384 1.00534 0.97266 1.21425 0.99017 0.94746 0.99599 1.21451 0.99655 0.94880 0.99575 1.21438 0.95472 1.00861 0.97014 1.21329 0.99334 0.93986 1.00021 1.23623 1.01908 0.95423 0.97194 0.89243 0.87354 0.89650 0.78476 0.89309 0.75836 1.22451 1.21726 0.82504 0.74842 0.89449 0.88334 0.85063 0.84860 0.84960 0.84828 0.84918 0.89039 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.01 10.65 127.77 1.36 1.37 16 2 N -0.41 -1.60 3.16 -534.28 -1.69 -3.29 16 3 C 0.03 0.03 9.94 83.48 0.83 0.86 16 4 C -0.18 -0.47 5.47 -20.12 -0.11 -0.58 16 5 C -0.05 0.04 3.01 71.24 0.21 0.25 16 6 O -0.56 -1.13 12.86 -148.98 -1.92 -3.04 16 7 Si 0.76 -2.22 30.59 68.60 2.10 -0.12 16 8 C -0.11 -0.38 10.28 22.57 0.23 -0.15 16 9 C -0.08 -0.46 6.88 40.35 0.28 -0.19 16 10 C 0.59 4.24 7.77 86.45 0.67 4.92 16 11 O -0.58 -7.70 14.31 -4.32 -0.06 -7.76 16 12 N -0.70 -0.68 5.33 -443.99 -2.37 -3.05 16 13 C 0.12 0.02 4.18 45.52 0.19 0.21 16 14 H 0.10 0.35 7.57 -2.39 -0.02 0.33 16 15 C -0.12 0.42 7.29 31.12 0.23 0.65 16 16 C -0.07 0.11 3.98 -10.96 -0.04 0.07 16 17 H 0.11 -0.31 8.09 -2.38 -0.02 -0.33 16 18 C -0.08 -0.08 5.29 -19.87 -0.11 -0.18 16 19 C -0.13 -0.11 8.60 22.27 0.19 0.08 16 20 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 21 C -0.14 -0.23 10.05 22.27 0.22 0.00 16 22 C -0.13 -0.21 10.05 22.27 0.22 0.02 16 23 C -0.13 -0.19 9.71 22.27 0.22 0.03 16 24 C -0.14 0.00 7.27 31.18 0.23 0.23 16 25 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.08 0.41 6.20 -2.39 -0.01 0.40 16 28 H 0.20 -1.06 6.19 -2.91 -0.02 -1.08 16 29 H 0.09 -0.38 7.96 -2.39 -0.02 -0.40 16 30 H 0.39 -2.32 8.74 -74.05 -0.65 -2.97 16 31 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 32 H -0.29 -0.49 7.11 99.48 0.71 0.21 16 33 H 0.16 -0.10 7.49 -2.91 -0.02 -0.13 16 34 H 0.41 -1.47 7.66 -92.71 -0.71 -2.18 16 35 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.10 -0.47 7.69 -2.39 -0.02 -0.49 16 37 H 0.13 -0.28 6.68 -2.91 -0.02 -0.30 16 38 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 39 H 0.13 -0.21 8.06 -2.92 -0.02 -0.23 16 40 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 41 H 0.13 -0.23 8.05 -2.91 -0.02 -0.25 16 42 H 0.09 -0.03 6.34 -2.38 -0.02 -0.05 16 43 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -20.04 356.34 0.83 -19.20 By element: Atomic # 1 Polarization: -9.29 SS G_CDS: -0.28 Total: -9.56 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.05 Total: 7.63 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -4.06 Total: -6.34 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.98 Total: -10.80 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.10 Total: -0.12 kcal Total: -20.04 0.83 -19.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.464 kcal (2) G-P(sol) polarization free energy of solvation -20.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds