Wall clock time and date at job start Sun Mar 7 2021 08:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37652 * 125.67840 * 2 1 4 4 C 1.46676 * 126.23506 * 0.02562 * 3 2 1 5 5 O 1.21698 * 119.99868 * 4.58353 * 4 3 2 6 6 N 1.34781 * 120.00400 * 184.30711 * 4 3 2 7 7 C 1.46495 * 119.99899 * 175.00604 * 6 4 3 8 8 H 1.08993 * 112.85296 * 334.66814 * 7 6 4 9 9 C 1.53789 * 113.61509 * 105.86406 * 7 6 4 10 10 C 1.53949 * 87.02076 * 139.94977 * 9 7 6 11 11 H 1.08998 * 113.54246 * 89.18863 * 10 9 7 12 12 C 1.50703 * 113.74280 * 220.05967 * 10 9 7 13 13 C 1.38228 * 120.00096 * 37.32133 * 12 10 9 14 14 C 1.38241 * 120.00217 * 179.76864 * 13 12 10 15 15 C 1.38239 * 119.99466 * 0.48458 * 14 13 12 16 16 C 1.38234 * 119.99932 * 359.79435 * 15 14 13 17 17 C 1.38227 * 120.00343 * 359.94797 * 16 15 14 18 18 C 1.53781 * 113.61215 * 203.46893 * 7 6 4 19 19 C 1.37875 * 107.53730 * 179.74284 * 3 2 1 20 20 C 1.39836 * 107.07966 * 0.26297 * 19 3 2 21 21 C 1.35451 * 107.86800 * 359.97438 * 20 19 3 22 22 C 1.50703 * 125.56429 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47038 * 209.98130 * 22 21 20 24 24 Si 1.86304 * 109.47216 * 329.97946 * 22 21 20 25 25 H 1.08995 * 109.47188 * 94.01131 * 1 2 3 26 26 H 1.08999 * 109.47148 * 214.01131 * 1 2 3 27 27 H 1.09007 * 109.47086 * 334.00901 * 1 2 3 28 28 H 0.96994 * 119.99613 * 355.00059 * 6 4 3 29 29 H 1.09000 * 113.61289 * 254.53287 * 9 7 6 30 30 H 1.08995 * 113.61108 * 25.42960 * 9 7 6 31 31 H 1.08002 * 120.00252 * 0.02562 * 13 12 10 32 32 H 1.07996 * 120.00124 * 180.25139 * 14 13 12 33 33 H 1.08003 * 119.99616 * 179.76690 * 15 14 13 34 34 H 1.08001 * 119.99503 * 179.97438 * 16 15 14 35 35 H 1.08001 * 120.00485 * 180.02562 * 17 16 15 36 36 H 1.09000 * 113.61321 * 334.56656 * 18 7 6 37 37 H 1.08997 * 113.61498 * 105.47634 * 18 7 6 38 38 H 1.07992 * 126.46009 * 180.26336 * 19 3 2 39 39 H 1.08002 * 126.06648 * 179.97438 * 20 19 3 40 40 H 1.09000 * 109.46917 * 89.97964 * 22 21 20 41 41 H 0.96693 * 114.00297 * 60.00008 * 23 22 21 42 42 H 1.48495 * 109.99738 * 180.02562 * 24 22 21 43 43 H 1.48497 * 109.99808 * 301.31729 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8124 2.5124 0.0005 5 8 0.6249 2.7647 0.0852 6 7 2.7095 3.5145 -0.0872 7 6 2.2503 4.9012 -0.1970 8 1 1.2526 4.9839 -0.6280 9 6 2.4321 5.7146 1.0955 10 6 2.8609 6.8909 0.1997 11 1 2.0299 7.5185 -0.1220 12 6 4.0147 7.6864 0.7539 13 6 5.0411 7.0432 1.4198 14 6 6.1019 7.7724 1.9239 15 6 6.1311 9.1459 1.7708 16 6 5.1018 9.7897 1.1098 17 6 4.0438 9.0600 0.6011 18 6 3.2807 5.8420 -0.8436 19 6 3.5780 0.6889 0.0059 20 6 3.5521 -0.7093 0.0033 21 6 2.2555 -1.1009 -0.0034 22 6 1.7709 -2.5279 -0.0076 23 8 0.5159 -2.6028 -0.6869 24 14 3.0154 -3.6038 -0.8818 25 1 -0.3633 -0.0719 -1.0251 26 1 -0.3633 -0.8519 0.5748 27 1 -0.3633 0.9238 0.4504 28 1 3.6592 3.3174 -0.0776 29 1 1.5015 5.8916 1.6346 30 1 3.2299 5.3413 1.7376 31 1 5.0164 5.9705 1.5427 32 1 6.9058 7.2694 2.4407 33 1 6.9580 9.7160 2.1679 34 1 5.1245 10.8629 0.9905 35 1 3.2398 9.5630 0.0843 36 1 4.3109 5.5037 -0.7326 37 1 3.0340 6.1219 -1.8678 38 1 4.4583 1.3144 0.0115 39 1 4.4132 -1.3611 0.0062 40 1 1.6495 -2.8734 1.0191 41 1 0.5491 -2.3100 -1.6078 42 1 2.5489 -5.0135 -0.8933 43 1 3.2135 -3.1236 -2.2730 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:25 Heat of formation + Delta-G solvation = 38.517224 kcal Electronic energy + Delta-G solvation = -25093.309707 eV Core-core repulsion = 21492.683176 eV Total energy + Delta-G solvation = -3600.626531 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60404 -41.32621 -40.03994 -38.62400 -37.87215 -35.03575 -33.69212 -32.00687 -31.73728 -31.06362 -27.55415 -27.24901 -26.71326 -25.56293 -23.60094 -23.32409 -22.26700 -21.37759 -20.79467 -20.09486 -18.85411 -18.22654 -18.09759 -17.13494 -16.98263 -16.45125 -16.34999 -16.02355 -15.80702 -15.47651 -15.34498 -15.11389 -14.79235 -14.49603 -14.28715 -14.25184 -14.14026 -13.96211 -13.77767 -13.45493 -13.32191 -13.11000 -12.95251 -12.53704 -12.41805 -12.29015 -11.96991 -11.80892 -11.65568 -11.46435 -11.16869 -10.83989 -10.16572 -9.79469 -9.74896 -9.53545 -9.09723 -4.87179 0.35047 0.45399 0.52485 1.17532 1.57028 1.73447 1.75670 2.02429 2.30981 2.36014 2.85692 3.18963 3.44701 3.57247 3.65958 3.72360 3.75762 3.93462 3.95025 4.06800 4.15930 4.19693 4.25491 4.31531 4.36099 4.49119 4.53698 4.55452 4.63500 4.65951 4.70206 4.74294 4.83367 4.97153 5.01302 5.08853 5.12326 5.17717 5.19666 5.23265 5.50678 5.61025 5.66768 5.72810 5.76951 5.99066 6.13032 6.14740 6.31610 6.48798 7.11833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.408 5.408 3 C -0.085 4.085 4 C 0.585 3.415 5 O -0.589 6.589 6 N -0.693 5.693 7 C 0.123 3.877 8 H 0.098 0.902 9 C -0.141 4.141 10 C -0.067 4.067 11 H 0.104 0.896 12 C -0.077 4.077 13 C -0.124 4.124 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.202 4.202 21 C 0.006 3.994 22 C -0.068 4.068 23 O -0.549 6.549 24 Si 0.817 3.183 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.417 0.583 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.131 0.869 41 H 0.385 0.615 42 H -0.298 1.298 43 H -0.291 1.291 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -0.239 -0.051 6.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.198 4.198 4 C 0.375 3.625 5 O -0.471 6.471 6 N -0.344 5.344 7 C 0.019 3.981 8 H 0.116 0.884 9 C -0.180 4.180 10 C -0.086 4.086 11 H 0.122 0.878 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.225 4.225 21 C -0.112 4.112 22 C -0.176 4.176 23 O -0.356 6.356 24 Si 0.720 3.280 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.194 0.806 39 H 0.202 0.798 40 H 0.149 0.851 41 H 0.234 0.766 42 H -0.226 1.226 43 H -0.218 1.218 Dipole moment (debyes) X Y Z Total from point charges 5.279 -0.760 -0.096 5.334 hybrid contribution -1.025 0.647 -0.589 1.348 sum 4.254 -0.113 -0.685 4.310 Atomic orbital electron populations 1.22245 0.76067 1.04810 1.03920 1.43908 1.07044 1.04738 1.52481 1.20232 0.91604 0.87180 1.20827 1.17301 0.85382 0.84466 0.75356 1.90764 1.18122 1.85440 1.52807 1.45515 1.10014 1.05295 1.73558 1.22513 0.99403 0.78551 0.97661 0.88444 1.23625 1.02235 0.95220 0.96926 1.21324 0.96106 0.94340 0.96796 0.87758 1.19782 0.95899 0.93716 0.98309 1.21223 0.93885 1.00741 0.98347 1.21446 0.98880 0.94447 0.99834 1.21458 0.99277 0.95291 0.99562 1.21421 0.94454 1.00772 0.98253 1.21313 0.99120 0.93927 1.00499 1.23396 0.99626 0.93713 0.99141 1.21732 0.94256 0.95875 1.03199 1.21021 0.95384 0.95574 1.10522 1.21508 0.91610 0.89250 1.08784 1.25271 0.93623 0.94212 1.04474 1.86569 1.30687 1.88602 1.29753 0.93324 0.82699 0.73223 0.78750 0.90534 0.88709 0.89760 0.74469 0.91816 0.88513 0.84620 0.84579 0.84987 0.85021 0.85211 0.87865 0.89743 0.80636 0.79801 0.85116 0.76636 1.22598 1.21774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 9.38 127.77 1.20 1.54 16 2 N -0.41 -2.07 3.16 -519.71 -1.64 -3.71 16 3 C -0.09 -0.40 6.89 40.35 0.28 -0.12 16 4 C 0.59 3.92 7.77 86.45 0.67 4.59 16 5 O -0.59 -8.36 14.23 -4.34 -0.06 -8.42 16 6 N -0.69 0.42 5.35 -443.99 -2.37 -1.95 16 7 C 0.12 -0.07 4.18 45.52 0.19 0.12 16 8 H 0.10 0.36 7.57 -2.39 -0.02 0.34 16 9 C -0.14 0.14 7.27 31.18 0.23 0.37 16 10 C -0.07 0.16 3.97 -10.95 -0.04 0.11 16 11 H 0.10 -0.29 8.09 -2.39 -0.02 -0.31 16 12 C -0.08 0.00 5.29 -19.87 -0.11 -0.11 16 13 C -0.12 0.10 8.63 22.27 0.19 0.29 16 14 C -0.13 0.03 10.05 22.27 0.22 0.25 16 15 C -0.14 -0.09 10.05 22.27 0.22 0.13 16 16 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 17 C -0.13 -0.13 9.71 22.27 0.22 0.09 16 18 C -0.12 0.53 7.30 31.12 0.23 0.76 16 19 C -0.12 0.18 10.36 22.57 0.23 0.41 16 20 C -0.20 0.49 9.37 22.01 0.21 0.69 16 21 C 0.01 0.01 6.14 41.34 0.25 0.26 16 22 C -0.07 0.12 2.90 71.24 0.21 0.33 16 23 O -0.55 -0.56 10.50 -148.98 -1.56 -2.13 16 24 Si 0.82 -3.48 31.10 68.60 2.13 -1.34 16 25 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.09 0.33 7.09 -2.39 -0.02 0.31 16 27 H 0.08 0.76 6.01 -2.38 -0.01 0.75 16 28 H 0.42 -2.80 7.61 -92.71 -0.71 -3.50 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.10 -0.22 6.32 -2.39 -0.02 -0.24 16 31 H 0.14 -0.63 6.66 -2.91 -0.02 -0.65 16 32 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 34 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 35 H 0.13 -0.22 8.05 -2.91 -0.02 -0.25 16 36 H 0.10 -0.68 7.70 -2.39 -0.02 -0.70 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.18 -1.49 7.45 -2.91 -0.02 -1.52 16 39 H 0.18 -1.75 6.85 -2.91 -0.02 -1.77 16 40 H 0.13 -0.46 7.96 -2.39 -0.02 -0.47 16 41 H 0.38 -1.21 8.70 -74.06 -0.64 -1.85 16 42 H -0.30 -0.88 7.11 99.48 0.71 -0.18 16 43 H -0.29 -0.40 7.11 99.48 0.71 0.30 16 Total: 0.00 -19.60 352.51 0.84 -18.76 By element: Atomic # 1 Polarization: -10.75 SS G_CDS: -0.27 Total: -11.02 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.62 Total: 9.82 kcal Atomic # 7 Polarization: -1.65 SS G_CDS: -4.02 Total: -5.66 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.63 Total: -10.55 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.13 Total: -1.34 kcal Total: -19.60 0.84 -18.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -19.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds