Wall clock time and date at job start Sun Mar 7 2021 08:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.36453 * 120.29482 * 120.00110 * 4 2 1 6 6 C 1.40098 * 119.25286 * 179.97438 * 5 4 2 7 7 C 1.40849 * 132.86506 * 179.97438 * 6 5 4 8 8 C 1.46575 * 126.57943 * 0.02562 * 7 6 5 9 9 O 1.21716 * 120.00219 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99469 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99379 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84906 * 336.19097 * 11 10 8 13 13 C 1.53775 * 113.61397 * 107.50635 * 11 10 8 14 14 C 1.53780 * 87.08448 * 139.98030 * 13 11 10 15 15 H 1.09002 * 113.69387 * 89.12282 * 14 13 11 16 16 C 1.50697 * 113.61437 * 220.01922 * 14 13 11 17 17 C 1.38241 * 120.00322 * 37.21843 * 16 14 13 18 18 C 1.38225 * 120.00256 * 179.78937 * 17 16 14 19 19 C 1.38240 * 120.00054 * 0.44291 * 18 17 16 20 20 C 1.38237 * 119.99975 * 359.80653 * 19 18 17 21 21 C 1.38233 * 120.00259 * 217.49334 * 16 14 13 22 22 C 1.53782 * 113.61053 * 205.00065 * 11 10 8 23 23 C 1.40555 * 106.84129 * 180.02562 * 7 6 5 24 24 N 1.30743 * 108.74448 * 359.97438 * 23 7 6 25 25 N 1.36576 * 120.22828 * 359.97438 * 6 5 4 26 26 C 1.36240 * 120.08420 * 359.97438 * 25 6 5 27 27 C 1.35191 * 120.70364 * 359.76190 * 26 25 6 28 28 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 29 29 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 30 30 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 31 31 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 32 32 H 1.07994 * 120.37571 * 359.94796 * 5 4 2 33 33 H 0.96997 * 120.00536 * 359.97438 * 10 8 7 34 34 H 1.09004 * 113.61136 * 254.52354 * 13 11 10 35 35 H 1.08996 * 113.61762 * 25.42449 * 13 11 10 36 36 H 1.08007 * 119.99314 * 0.02562 * 17 16 14 37 37 H 1.08004 * 120.00324 * 180.27658 * 18 17 16 38 38 H 1.07999 * 119.99918 * 179.83577 * 19 18 17 39 39 H 1.07993 * 120.00117 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.99672 * 359.97438 * 21 16 14 41 41 H 1.08999 * 113.61522 * 334.56405 * 22 11 10 42 42 H 1.08998 * 113.61408 * 105.47125 * 22 11 10 43 43 H 1.07997 * 125.62883 * 179.97438 * 23 7 6 44 44 H 1.07993 * 119.64722 * 179.97438 * 26 25 6 45 45 H 1.07994 * 119.83944 * 180.24349 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.7162 -1.8204 1.1122 6 6 3.1715 -2.4634 2.2706 7 6 3.9753 -3.6006 2.4822 8 6 4.5755 -4.4503 1.4497 9 8 4.3957 -4.1972 0.2728 10 7 5.3266 -5.5120 1.8037 11 6 5.9270 -6.3610 0.7717 12 1 5.3956 -6.3121 -0.1787 13 6 7.4489 -6.1857 0.6385 14 6 7.5294 -7.7103 0.4542 15 1 7.4377 -8.0315 -0.5834 16 6 8.7002 -8.3429 1.1613 17 6 9.0993 -7.8695 2.3973 18 6 10.1704 -8.4525 3.0479 19 6 10.8485 -9.5031 2.4584 20 6 10.4528 -9.9732 1.2201 21 6 9.3788 -9.3929 0.5715 22 6 6.2129 -7.7962 1.2444 23 6 4.0912 -3.7641 3.8734 24 7 3.4191 -2.8119 4.4658 25 7 2.8323 -1.9819 3.5028 26 6 2.0490 -0.8724 3.6106 27 6 1.6026 -0.2327 2.5064 28 1 -0.3932 0.4418 0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5881 2.4585 1.2242 32 1 2.9830 -2.1991 0.1367 33 1 5.4702 -5.7135 2.7415 34 1 7.7478 -5.6227 -0.2458 35 1 7.9290 -5.8301 1.5501 36 1 8.5715 -7.0464 2.8563 37 1 10.4794 -8.0856 4.0155 38 1 11.6871 -9.9570 2.9655 39 1 10.9827 -10.7937 0.7594 40 1 9.0696 -9.7601 -0.3960 41 1 6.3550 -7.8809 2.3217 42 1 5.5139 -8.5334 0.8493 43 1 4.6442 -4.5471 4.3708 44 1 1.7847 -0.4980 4.5884 45 1 0.9857 0.6479 2.6081 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:27 Heat of formation + Delta-G solvation = 94.715334 kcal Electronic energy + Delta-G solvation = -29031.077852 eV Core-core repulsion = 24982.783922 eV Total energy + Delta-G solvation = -4048.293930 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.31546 -41.34219 -40.10559 -39.36907 -38.53839 -37.31691 -34.67618 -34.17247 -32.12187 -31.85624 -31.64058 -30.23066 -27.42596 -26.64843 -26.05070 -24.90239 -23.82944 -23.50938 -23.07197 -22.12526 -21.34096 -20.29557 -19.03423 -18.60657 -18.21367 -17.81527 -17.45055 -16.99303 -16.92939 -16.46100 -16.36791 -15.92707 -15.80809 -15.68735 -15.46569 -15.20874 -15.04103 -14.67607 -14.25895 -14.25034 -14.09743 -13.87427 -13.81944 -13.49175 -13.40085 -13.24580 -13.07286 -12.50056 -12.46919 -12.27014 -12.11195 -11.90137 -11.75389 -11.62054 -11.58226 -11.39348 -10.90871 -10.87339 -10.32696 -10.01644 -9.78033 -9.51081 -8.79595 -4.89134 -0.56504 -0.14161 0.46858 0.53910 1.02349 1.03111 1.21221 1.59731 1.89000 2.08070 2.28205 2.49482 2.87677 3.08644 3.23358 3.36876 3.51741 3.54737 3.70839 3.75484 3.79068 3.86753 3.95423 4.00288 4.09614 4.16809 4.19194 4.23831 4.32565 4.35747 4.41540 4.57595 4.61027 4.66189 4.72759 4.78447 4.81741 4.88230 5.02527 5.07093 5.10571 5.14264 5.16379 5.21943 5.26853 5.31159 5.61970 5.63559 5.65307 5.68189 5.78554 6.16306 6.28569 6.45970 6.64393 7.32748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.085 4.085 3 Si 0.768 3.232 4 C -0.051 4.051 5 C -0.115 4.115 6 C 0.152 3.848 7 C -0.340 4.340 8 C 0.599 3.401 9 O -0.591 6.591 10 N -0.704 5.704 11 C 0.124 3.876 12 H 0.098 0.902 13 C -0.140 4.140 14 C -0.068 4.068 15 H 0.104 0.896 16 C -0.076 4.076 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.124 4.124 23 C 0.131 3.869 24 N -0.340 5.340 25 N -0.274 5.274 26 C 0.117 3.883 27 C -0.157 4.157 28 H 0.390 0.610 29 H 0.123 0.877 30 H -0.294 1.294 31 H -0.253 1.253 32 H 0.151 0.849 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.234 0.766 44 H 0.205 0.795 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 1.507 4.080 4.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.192 4.192 3 Si 0.668 3.332 4 C -0.057 4.057 5 C -0.135 4.135 6 C 0.031 3.969 7 C -0.355 4.355 8 C 0.389 3.611 9 O -0.473 6.473 10 N -0.354 5.354 11 C 0.019 3.981 12 H 0.116 0.884 13 C -0.179 4.179 14 C -0.087 4.087 15 H 0.122 0.878 16 C -0.076 4.076 17 C -0.142 4.142 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.162 4.162 23 C -0.050 4.050 24 N -0.160 5.160 25 N -0.038 5.038 26 C -0.008 4.008 27 C -0.178 4.178 28 H 0.241 0.759 29 H 0.141 0.859 30 H -0.221 1.221 31 H -0.178 1.178 32 H 0.169 0.831 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.250 0.750 44 H 0.222 0.778 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.968 2.592 3.977 4.845 hybrid contribution -0.619 -0.884 -0.087 1.083 sum 0.349 1.708 3.891 4.263 Atomic orbital electron populations 1.86682 1.17389 1.80621 1.50347 1.25300 0.84011 1.12487 0.97411 0.93433 0.90678 0.70539 0.78513 1.20565 0.94653 0.93920 0.96559 1.20661 0.99816 0.95518 0.97524 1.19559 0.95951 0.94600 0.86825 1.19729 1.17265 1.04234 0.94268 1.17053 0.77169 0.80035 0.86851 1.90750 1.63390 1.72983 1.20154 1.45557 1.51446 1.27807 1.10633 1.22445 0.92933 0.90152 0.92560 0.88382 1.23592 0.95819 0.95366 1.03120 1.21305 0.92383 0.95255 0.99719 0.87789 1.19805 0.96643 0.96090 0.95060 1.21227 0.97560 1.00455 0.94966 1.21436 0.96075 0.96506 1.00644 1.21448 1.00611 0.97583 0.96019 1.21418 0.97363 1.00421 0.95701 1.21318 0.96235 0.96704 1.00635 1.23406 0.95989 0.95197 1.01579 1.24601 0.93414 0.95720 0.91230 1.77572 1.19660 1.07292 1.11505 1.46304 1.32490 1.19589 1.05406 1.22183 0.91037 0.84181 1.03444 1.21095 1.04009 1.03135 0.89549 0.75948 0.85936 1.22068 1.17754 0.83104 0.75003 0.91651 0.88524 0.84571 0.84666 0.85055 0.85050 0.85214 0.88070 0.90087 0.74992 0.77809 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.11 12.88 -148.98 -1.92 -1.81 16 2 C -0.08 0.20 2.84 71.24 0.20 0.41 16 3 Si 0.77 -3.77 31.95 68.60 2.19 -1.57 16 4 C -0.05 0.06 4.54 -19.82 -0.09 -0.03 16 5 C -0.12 -0.51 9.35 22.30 0.21 -0.30 16 6 C 0.15 0.98 6.76 39.50 0.27 1.24 16 7 C -0.34 -1.91 6.17 -19.90 -0.12 -2.03 16 8 C 0.60 4.28 7.78 86.42 0.67 4.95 16 9 O -0.59 -8.62 15.30 -4.40 -0.07 -8.68 16 10 N -0.70 0.20 5.35 -444.08 -2.37 -2.17 16 11 C 0.12 -0.01 4.24 45.52 0.19 0.18 16 12 H 0.10 0.43 7.46 -2.39 -0.02 0.41 16 13 C -0.14 0.14 7.25 31.12 0.23 0.37 16 14 C -0.07 0.13 3.98 -11.01 -0.04 0.09 16 15 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 16 C -0.08 -0.03 5.29 -19.87 -0.11 -0.13 16 17 C -0.12 0.06 8.62 22.27 0.19 0.25 16 18 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 19 C -0.14 -0.14 10.05 22.27 0.22 0.08 16 20 C -0.13 -0.19 10.05 22.27 0.22 0.04 16 21 C -0.13 -0.18 9.71 22.27 0.22 0.04 16 22 C -0.12 0.45 7.30 31.12 0.23 0.68 16 23 C 0.13 0.11 11.44 85.42 0.98 1.09 16 24 N -0.34 -1.60 12.57 -56.62 -0.71 -2.31 16 25 N -0.27 -1.05 3.86 -187.28 -0.72 -1.78 16 26 C 0.12 -0.36 11.18 83.31 0.93 0.57 16 27 C -0.16 0.87 8.38 22.03 0.18 1.06 16 28 H 0.39 -3.25 8.10 -74.05 -0.60 -3.86 16 29 H 0.12 -0.24 7.71 -2.38 -0.02 -0.26 16 30 H -0.29 -0.89 7.11 99.48 0.71 -0.18 16 31 H -0.25 1.16 7.03 99.48 0.70 1.86 16 32 H 0.15 0.98 7.01 -2.91 -0.02 0.96 16 33 H 0.41 -2.81 7.65 -92.71 -0.71 -3.52 16 34 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 35 H 0.10 -0.24 6.30 -2.39 -0.02 -0.26 16 36 H 0.14 -0.60 6.64 -2.91 -0.02 -0.62 16 37 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.13 -0.17 8.05 -2.91 -0.02 -0.20 16 41 H 0.10 -0.59 7.71 -2.39 -0.02 -0.61 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.30 16 43 H 0.23 -2.06 7.46 -2.91 -0.02 -2.08 16 44 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 45 H 0.19 -2.40 7.25 -2.91 -0.02 -2.42 16 Total: 0.00 -24.80 378.96 0.98 -23.83 By element: Atomic # 1 Polarization: -14.02 SS G_CDS: -0.23 Total: -14.25 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.81 Total: 8.75 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -3.81 Total: -6.26 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.99 Total: -10.49 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.19 Total: -1.57 kcal Total: -24.80 0.98 -23.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.544 kcal (2) G-P(sol) polarization free energy of solvation -24.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds