Wall clock time and date at job start Sun Mar 7 2021 08:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35665 * 116.99887 * 2 1 4 4 C 1.38391 * 120.12038 * 0.02562 * 3 2 1 5 5 C 1.38732 * 120.03319 * 180.02562 * 4 3 2 6 6 O 1.35717 * 119.85925 * 179.97438 * 5 4 3 7 7 C 1.42893 * 117.00448 * 359.97438 * 6 5 4 8 8 C 1.39142 * 120.27242 * 359.97438 * 5 4 3 9 9 C 1.50700 * 119.87816 * 179.97438 * 8 5 4 10 10 O 1.42899 * 109.46997 * 75.00262 * 9 8 5 11 11 Si 1.86299 * 109.46924 * 195.00448 * 9 8 5 12 12 C 1.37582 * 120.23916 * 359.97438 * 8 5 4 13 13 C 1.39816 * 119.96462 * 359.74303 * 12 8 5 14 14 C 1.47303 * 120.13519 * 180.27808 * 13 12 8 15 15 O 1.21622 * 119.99986 * 180.27368 * 14 13 12 16 16 N 1.34777 * 120.00401 * 0.27449 * 14 13 12 17 17 C 1.46492 * 120.00297 * 180.02562 * 16 14 13 18 18 H 1.08997 * 112.85099 * 23.79854 * 17 16 14 19 19 C 1.53782 * 113.61559 * 154.99854 * 17 16 14 20 20 C 1.53780 * 87.08266 * 139.97718 * 19 17 16 21 21 H 1.09001 * 113.61438 * 89.11307 * 20 19 17 22 22 C 1.50694 * 113.61488 * 219.93397 * 20 19 17 23 23 C 1.38231 * 120.00333 * 59.73047 * 22 20 19 24 24 C 1.38235 * 120.00468 * 179.74691 * 23 22 20 25 25 C 1.38233 * 119.99892 * 0.54302 * 24 23 22 26 26 C 1.38236 * 119.99779 * 359.70603 * 25 24 23 27 27 C 1.38235 * 119.99942 * 0.02562 * 26 25 24 28 28 C 1.53781 * 87.08207 * 334.56679 * 20 19 17 29 29 H 1.08998 * 109.47043 * 300.00131 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99729 * 1 2 3 31 31 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.98439 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.47547 * 300.00145 * 7 6 5 34 34 H 1.09002 * 109.47253 * 60.00327 * 7 6 5 35 35 H 1.09003 * 109.47211 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46949 * 315.00230 * 9 8 5 37 37 H 0.96701 * 113.99717 * 180.02562 * 10 9 8 38 38 H 1.48493 * 110.00161 * 178.68222 * 11 9 8 39 39 H 1.48505 * 109.99749 * 299.99802 * 11 9 8 40 40 H 1.08002 * 120.01489 * 179.97438 * 12 8 5 41 41 H 0.97008 * 119.99418 * 359.97438 * 16 14 13 42 42 H 1.08997 * 113.61573 * 254.52714 * 19 17 16 43 43 H 1.09003 * 113.61198 * 25.42925 * 19 17 16 44 44 H 1.08008 * 119.99932 * 359.97438 * 23 22 20 45 45 H 1.08000 * 120.00496 * 180.27529 * 24 23 22 46 46 H 1.08000 * 120.00345 * 179.72639 * 25 24 23 47 47 H 1.07998 * 120.00184 * 179.97438 * 26 25 24 48 48 H 1.08004 * 119.99670 * 179.97438 * 27 26 25 49 49 H 1.08999 * 113.61284 * 270.88245 * 28 20 19 50 50 H 1.09004 * 113.61447 * 139.97536 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2936 2.3710 0.0005 5 6 1.9253 3.6062 0.0000 6 8 1.1850 4.7437 0.0000 7 6 -0.2360 4.5931 0.0000 8 6 3.3145 3.6835 -0.0005 9 6 3.9915 5.0299 -0.0017 10 8 3.8944 5.6130 1.2993 11 14 5.7860 4.8223 -0.4569 12 6 4.0724 2.5352 0.0000 13 6 3.4462 1.2852 0.0065 14 6 4.2539 0.0534 0.0133 15 8 3.7066 -1.0327 0.0139 16 7 5.5995 0.1299 0.0188 17 6 6.4028 -1.0951 0.0249 18 1 5.8681 -1.9540 -0.3807 19 6 7.8110 -0.9114 -0.5650 20 6 8.3177 -1.8246 0.5637 21 1 8.3070 -2.8838 0.3065 22 6 9.6294 -1.3798 1.1573 23 6 9.7354 -0.1323 1.7431 24 6 10.9373 0.2737 2.2922 25 6 12.0363 -0.5634 2.2456 26 6 11.9318 -1.8090 1.6552 27 6 10.7284 -2.2171 1.1110 28 6 7.0894 -1.3747 1.3723 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2149 2.3164 0.0005 33 1 -0.5432 4.0438 -0.8899 34 1 -0.5431 4.0439 0.8900 35 1 -0.7056 5.5767 0.0005 36 1 3.5051 5.6804 -0.7286 37 1 4.3094 6.4833 1.3722 38 1 6.4574 6.1463 -0.4927 39 1 6.4603 3.9373 0.5266 40 1 5.1505 2.5995 -0.0009 41 1 6.0360 0.9962 0.0179 42 1 7.9272 -1.3413 -1.5599 43 1 8.1821 0.1114 -0.4989 44 1 8.8781 0.5239 1.7750 45 1 11.0189 1.2467 2.7539 46 1 12.9765 -0.2445 2.6706 47 1 12.7905 -2.4629 1.6183 48 1 10.6469 -3.1901 0.6494 49 1 7.2632 -0.4787 1.9681 50 1 6.6229 -2.1788 1.9415 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:32 Heat of formation + Delta-G solvation = -46.603686 kcal Electronic energy + Delta-G solvation = -33518.382087 eV Core-core repulsion = 29058.362204 eV Total energy + Delta-G solvation = -4460.019883 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11687 -41.30430 -40.33412 -39.81491 -38.64229 -38.34673 -37.15133 -34.72859 -32.39491 -32.13534 -31.77372 -31.21106 -28.97901 -28.22075 -26.67890 -26.27696 -25.97704 -24.47932 -23.58440 -22.97303 -22.07369 -21.50045 -20.39493 -19.92748 -18.61608 -18.54837 -18.29420 -17.91042 -17.28180 -17.08632 -16.82022 -16.53705 -16.40117 -16.34678 -15.93324 -15.79574 -15.76768 -15.47431 -15.28068 -15.25362 -14.42923 -14.29193 -14.17953 -14.15571 -13.88725 -13.85107 -13.71531 -13.49024 -13.43114 -13.07997 -12.79346 -12.55230 -12.51022 -12.50535 -12.28135 -12.13888 -11.89513 -11.78294 -11.63909 -11.62788 -11.42339 -10.88330 -10.41372 -10.08044 -9.91775 -9.80728 -9.53700 -9.19182 -4.92321 -0.26270 0.07079 0.44374 0.51163 1.29277 1.58722 1.71605 1.92497 2.11228 2.12764 2.18826 2.57528 2.85028 3.33194 3.46954 3.54000 3.66799 3.70101 3.75539 3.76795 3.86571 3.95890 4.06803 4.09456 4.15464 4.16876 4.20568 4.23785 4.27978 4.28565 4.30330 4.30629 4.44726 4.58153 4.63277 4.64133 4.67350 4.72706 4.76202 4.76822 4.85584 4.91043 5.00277 5.04318 5.04971 5.12297 5.18372 5.25491 5.29329 5.57613 5.60314 5.65445 5.76009 6.02825 6.13623 6.28410 6.53089 6.64326 7.24198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.310 4.310 5 C 0.214 3.786 6 O -0.311 6.311 7 C 0.012 3.988 8 C -0.163 4.163 9 C -0.074 4.074 10 O -0.556 6.556 11 Si 0.754 3.246 12 C 0.000 4.000 13 C -0.228 4.228 14 C 0.565 3.435 15 O -0.563 6.563 16 N -0.710 5.710 17 C 0.122 3.878 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.066 4.066 21 H 0.108 0.892 22 C -0.075 4.075 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.392 0.608 38 H -0.282 1.282 39 H -0.270 1.270 40 H 0.158 0.842 41 H 0.408 0.592 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.091 0.909 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 4.210 -3.292 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.329 4.329 5 C 0.166 3.834 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.182 4.182 10 O -0.365 6.365 11 Si 0.657 3.343 12 C -0.018 4.018 13 C -0.232 4.232 14 C 0.354 3.646 15 O -0.443 6.443 16 N -0.362 5.362 17 C 0.017 3.983 18 H 0.121 0.879 19 C -0.161 4.161 20 C -0.085 4.085 21 H 0.126 0.874 22 C -0.075 4.075 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.184 4.184 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.242 0.758 38 H -0.209 1.209 39 H -0.197 1.197 40 H 0.175 0.825 41 H 0.246 0.754 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.109 0.891 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.256 3.000 -2.937 4.207 hybrid contribution -0.682 1.222 1.086 1.771 sum -0.938 4.222 -1.851 4.704 Atomic orbital electron populations 1.23481 0.76500 1.05790 1.02669 1.86366 1.23228 1.25783 1.86027 1.18962 0.91024 0.84776 0.88393 1.21414 1.02055 0.90655 1.18821 1.18903 0.90820 0.85056 0.88622 1.86110 1.21088 1.28574 1.86525 1.23477 0.76210 1.05948 1.02606 1.18592 0.90436 0.94942 1.12398 1.24843 1.12412 0.93056 0.87843 1.86568 1.80861 1.38607 1.30495 0.94390 0.71517 0.80789 0.87631 1.20940 1.00097 0.89127 0.91657 1.19148 0.90957 0.93752 1.19384 1.18059 0.82648 0.88298 0.75597 1.90807 1.72331 1.30156 1.50961 1.45808 1.05086 1.10169 1.75116 1.22513 0.90429 0.88086 0.97271 0.87930 1.23415 0.92560 1.01190 0.98915 1.21307 0.90126 1.00573 0.96489 0.87391 1.19794 0.95002 0.94374 0.98368 1.21193 0.98143 0.96328 0.98835 1.21410 0.93209 1.00443 0.99722 1.21440 0.99413 0.94692 0.99984 1.21435 0.98284 0.96807 0.98184 1.21326 0.92810 1.00291 1.00171 1.23616 0.95634 1.02092 0.97043 0.91273 0.90745 0.86839 0.81736 0.90842 0.91726 0.86073 0.89838 0.75793 1.20892 1.19661 0.82506 0.75410 0.89275 0.88194 0.85195 0.84945 0.84965 0.84812 0.84917 0.89086 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.87 8.56 -68.85 -0.59 -3.46 16 3 C 0.22 1.67 6.70 22.82 0.15 1.83 16 4 C -0.31 -0.95 8.01 22.42 0.18 -0.77 16 5 C 0.21 0.88 6.67 22.61 0.15 1.03 16 6 O -0.31 -0.82 9.80 -90.39 -0.89 -1.70 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.55 5.30 -19.80 -0.11 -0.66 16 9 C -0.07 -0.02 2.36 71.24 0.17 0.15 16 10 O -0.56 -1.68 12.86 -148.98 -1.92 -3.59 16 11 Si 0.75 -2.90 30.19 68.60 2.07 -0.82 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.66 5.89 -20.00 -0.12 -1.77 16 14 C 0.56 5.46 7.76 86.63 0.67 6.13 16 15 O -0.56 -9.95 14.75 16.86 0.25 -9.70 16 16 N -0.71 -1.75 5.30 -443.42 -2.35 -4.10 16 17 C 0.12 0.20 4.24 45.52 0.19 0.39 16 18 H 0.10 0.56 7.46 -2.39 -0.02 0.54 16 19 C -0.12 0.35 7.30 31.12 0.23 0.57 16 20 C -0.07 0.06 3.98 -11.02 -0.04 0.02 16 21 H 0.11 -0.21 8.09 -2.39 -0.02 -0.23 16 22 C -0.08 -0.11 5.29 -19.87 -0.11 -0.21 16 23 C -0.13 -0.17 8.60 22.27 0.19 0.02 16 24 C -0.13 -0.21 10.05 22.27 0.22 0.01 16 25 C -0.14 -0.24 10.05 22.27 0.22 -0.02 16 26 C -0.13 -0.22 10.05 22.27 0.22 0.00 16 27 C -0.13 -0.22 9.71 22.27 0.22 0.00 16 28 C -0.15 -0.17 7.26 31.12 0.23 0.05 16 29 H 0.07 -0.23 7.66 -2.39 -0.02 -0.25 16 30 H 0.07 -0.32 7.66 -2.39 -0.02 -0.33 16 31 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.17 -0.40 4.50 -2.91 -0.01 -0.41 16 33 H 0.07 -0.56 7.65 -2.39 -0.02 -0.58 16 34 H 0.06 -0.38 7.65 -2.39 -0.02 -0.40 16 35 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H 0.08 -0.13 7.82 -2.39 -0.02 -0.15 16 37 H 0.39 -1.95 8.74 -74.06 -0.65 -2.60 16 38 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 39 H -0.27 0.22 6.74 99.48 0.67 0.89 16 40 H 0.16 -0.44 3.20 -2.91 -0.01 -0.45 16 41 H 0.41 -1.23 6.74 -92.70 -0.63 -1.86 16 42 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.10 -0.48 7.69 -2.39 -0.02 -0.50 16 44 H 0.13 -0.20 6.68 -2.91 -0.02 -0.22 16 45 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 46 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 47 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 48 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 49 H 0.09 0.06 6.33 -2.39 -0.02 0.04 16 50 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 Total: 0.00 -23.97 404.92 1.39 -22.58 By element: Atomic # 1 Polarization: -8.03 SS G_CDS: -0.27 Total: -8.30 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.08 Total: 9.11 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: -2.35 Total: -4.10 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -3.14 Total: -18.46 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.07 Total: -0.82 kcal Total: -23.97 1.39 -22.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.022 kcal (2) G-P(sol) polarization free energy of solvation -23.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds