Wall clock time and date at job start Sun Mar 7 2021 08:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47375 * 2 1 4 4 C 1.50703 * 109.47124 * 239.99499 * 2 1 3 5 5 C 1.37855 * 119.89354 * 300.00435 * 4 2 1 6 6 C 1.39661 * 119.87904 * 179.97438 * 5 4 2 7 7 C 1.47690 * 120.16403 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99807 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00256 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27862 * 9 7 6 11 11 H 1.09000 * 112.84813 * 334.38493 * 10 9 7 12 12 C 1.53783 * 113.61758 * 105.58441 * 10 9 7 13 13 C 1.53953 * 87.01967 * 139.94777 * 12 10 9 14 14 H 1.09008 * 113.53404 * 89.18891 * 13 12 10 15 15 C 1.50695 * 113.74557 * 220.05571 * 13 12 10 16 16 C 1.38243 * 119.99921 * 37.32622 * 15 13 12 17 17 C 1.38234 * 119.99998 * 179.76301 * 16 15 13 18 18 C 1.38240 * 119.99716 * 0.49149 * 17 16 15 19 19 C 1.38231 * 120.00361 * 359.78726 * 18 17 16 20 20 C 1.38230 * 120.00335 * 217.59995 * 15 13 12 21 21 C 1.53779 * 113.61166 * 203.19166 * 10 9 7 22 22 C 1.39823 * 119.66391 * 0.25029 * 6 5 4 23 23 F 1.35105 * 120.10602 * 179.72545 * 22 6 5 24 24 C 1.38325 * 119.78088 * 359.47247 * 22 6 5 25 25 C 1.38197 * 120.11526 * 0.52910 * 24 22 6 26 26 H 0.96701 * 113.99572 * 60.00042 * 1 2 3 27 27 H 1.09006 * 109.46830 * 120.00112 * 2 1 3 28 28 H 1.48502 * 110.00153 * 59.99613 * 3 2 1 29 29 H 1.48497 * 110.00248 * 181.32230 * 3 2 1 30 30 H 1.07998 * 120.05687 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 32 32 H 1.08995 * 113.61864 * 254.52969 * 12 10 9 33 33 H 1.08999 * 113.60888 * 25.43011 * 12 10 9 34 34 H 1.08003 * 119.99319 * 0.02562 * 16 15 13 35 35 H 1.07999 * 120.00188 * 180.24891 * 17 16 15 36 36 H 1.08006 * 119.99461 * 179.76520 * 18 17 16 37 37 H 1.07999 * 120.00338 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00308 * 0.02562 * 20 15 13 39 39 H 1.08996 * 113.61592 * 334.56671 * 21 10 9 40 40 H 1.09000 * 113.61393 * 105.38671 * 21 10 9 41 41 H 1.08002 * 119.93880 * 180.27155 * 24 22 6 42 42 H 1.08004 * 119.83036 * 179.72114 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5969 -2.0304 -1.4463 6 6 2.0622 -2.6884 -2.5870 7 6 1.7082 -4.1024 -2.8242 8 8 2.1145 -4.6722 -3.8184 9 7 0.9339 -4.7610 -1.9392 10 6 0.5879 -6.1654 -2.1716 11 1 0.6107 -6.4380 -3.2267 12 6 1.3509 -7.1460 -1.2654 13 6 0.0333 -7.9329 -1.1433 14 1 -0.0949 -8.6900 -1.9170 15 6 -0.2313 -8.4620 0.2427 16 6 0.1132 -7.7070 1.3483 17 6 -0.1339 -8.1902 2.6196 18 6 -0.7164 -9.4329 2.7855 19 6 -1.0556 -10.1904 1.6801 20 6 -0.8133 -9.7048 0.4087 21 6 -0.6932 -6.6121 -1.4475 22 6 2.8695 -2.0033 -3.5002 23 9 3.3291 -2.6328 -4.6037 24 6 3.1918 -0.6775 -3.2726 25 6 2.7264 -0.0352 -2.1409 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7702 -0.0322 30 1 0.9756 -2.5542 -0.7351 31 1 0.6095 -4.3063 -1.1462 32 1 2.1407 -7.6925 -1.7807 33 1 1.6839 -6.7038 -0.3265 34 1 0.5716 -6.7377 1.2185 35 1 0.1315 -7.5986 3.4833 36 1 -0.9060 -9.8120 3.7789 37 1 -1.5102 -11.1614 1.8097 38 1 -1.0781 -10.2968 -0.4549 39 1 -0.9200 -6.0237 -0.5585 40 1 -1.5515 -6.7268 -2.1095 41 1 3.8116 -0.1446 -3.9785 42 1 2.9846 0.9988 -1.9655 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:36 Heat of formation + Delta-G solvation = -25.644362 kcal Electronic energy + Delta-G solvation = -26787.752991 eV Core-core repulsion = 22807.627619 eV Total energy + Delta-G solvation = -3980.125372 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.02219 -41.69669 -40.82045 -39.87425 -38.67777 -37.42593 -35.00054 -32.78174 -32.28242 -31.82361 -31.43593 -26.75855 -26.65313 -26.52366 -25.07455 -23.64304 -23.26712 -22.16098 -21.65700 -20.43155 -19.16521 -18.43280 -18.29673 -18.05430 -17.28133 -17.00139 -16.89104 -16.41783 -16.25104 -15.98972 -15.93141 -15.71903 -15.59209 -15.30530 -14.83684 -14.54271 -14.38616 -14.31171 -14.19131 -13.93886 -13.64816 -13.49425 -13.28646 -13.09417 -12.86710 -12.57809 -12.32225 -12.15042 -11.86312 -11.84085 -11.69487 -11.50307 -11.13068 -10.47863 -10.41559 -10.12075 -9.82607 -9.81559 -9.56300 -4.95899 -0.51049 -0.03910 0.42068 0.49446 1.31884 1.58091 1.67307 1.95230 2.02642 2.46436 2.82639 3.04039 3.35283 3.39476 3.47312 3.57322 3.64820 3.67505 3.69387 3.89774 3.99756 4.03563 4.10157 4.12853 4.16723 4.28457 4.44109 4.52157 4.56758 4.60952 4.66267 4.70198 4.75780 4.80025 4.83735 4.93469 4.94538 4.98223 5.07350 5.13033 5.14970 5.18922 5.46379 5.57991 5.58964 5.63794 5.72636 6.11688 6.34790 6.79588 7.02837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.066 4.066 3 Si 0.770 3.230 4 C -0.134 4.134 5 C -0.025 4.025 6 C -0.189 4.189 7 C 0.554 3.446 8 O -0.572 6.572 9 N -0.698 5.698 10 C 0.119 3.881 11 H 0.099 0.901 12 C -0.142 4.142 13 C -0.066 4.066 14 H 0.106 0.894 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.121 4.121 22 C 0.132 3.868 23 F -0.137 7.137 24 C -0.152 4.152 25 C -0.052 4.052 26 H 0.397 0.603 27 H 0.119 0.881 28 H -0.302 1.302 29 H -0.281 1.281 30 H 0.158 0.842 31 H 0.415 0.585 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.167 0.833 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 4.693 3.377 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.176 4.176 3 Si 0.676 3.324 4 C -0.134 4.134 5 C -0.044 4.044 6 C -0.193 4.193 7 C 0.342 3.658 8 O -0.452 6.452 9 N -0.350 5.350 10 C 0.014 3.986 11 H 0.117 0.883 12 C -0.181 4.181 13 C -0.085 4.085 14 H 0.124 0.876 15 C -0.077 4.077 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.159 4.159 22 C 0.112 3.888 23 F -0.115 7.115 24 C -0.170 4.170 25 C -0.069 4.069 26 H 0.248 0.752 27 H 0.136 0.864 28 H -0.230 1.230 29 H -0.208 1.208 30 H 0.175 0.825 31 H 0.253 0.747 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.185 0.815 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.070 4.526 3.590 6.137 hybrid contribution 0.239 -0.905 0.176 0.952 sum -1.831 3.621 3.766 5.536 Atomic orbital electron populations 1.86493 1.16714 1.82049 1.50678 1.25106 0.85597 1.10381 0.96549 0.93794 0.78055 0.75155 0.85360 1.20482 1.00044 0.94618 0.98275 1.21176 0.95431 0.94026 0.93720 1.20069 1.05512 0.94582 0.99102 1.18384 0.78374 0.86298 0.82739 1.90837 1.54871 1.69723 1.29812 1.45771 1.51144 1.12614 1.25444 1.22556 0.96620 0.79285 1.00153 0.88302 1.23632 0.96863 0.97083 1.00520 1.21322 0.96531 0.96590 0.94053 0.87617 1.19778 0.98527 0.94626 0.94759 1.21206 1.00440 1.00535 0.92096 1.21433 0.98971 0.96417 0.97858 1.21459 0.99318 0.95203 0.99579 1.21433 1.00030 1.00585 0.92770 1.21323 0.99558 0.95948 0.97931 1.23385 0.96257 0.95245 1.00987 1.18228 0.95204 0.91894 0.83471 1.91560 1.86460 1.82719 1.50801 1.21391 1.03220 0.91741 1.00667 1.21387 0.93529 1.00674 0.91326 0.75226 0.86367 1.23026 1.20755 0.82484 0.74678 0.91693 0.88570 0.84809 0.84702 0.84952 0.84903 0.85092 0.88018 0.89602 0.81526 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.67 12.76 -148.98 -1.90 1.76 16 2 C -0.07 0.48 2.82 71.24 0.20 0.68 16 3 Si 0.77 -5.85 29.78 68.60 2.04 -3.80 16 4 C -0.13 0.80 5.39 -19.90 -0.11 0.69 16 5 C -0.02 0.09 9.09 22.52 0.20 0.30 16 6 C -0.19 -0.60 5.88 -20.05 -0.12 -0.72 16 7 C 0.55 4.10 7.77 86.74 0.67 4.78 16 8 O -0.57 -9.73 14.96 -3.95 -0.06 -9.78 16 9 N -0.70 0.03 5.31 -443.05 -2.35 -2.33 16 10 C 0.12 0.04 4.21 45.52 0.19 0.23 16 11 H 0.10 0.48 7.50 -2.39 -0.02 0.46 16 12 C -0.14 0.04 7.27 31.18 0.23 0.27 16 13 C -0.07 0.11 3.97 -10.96 -0.04 0.07 16 14 H 0.11 -0.24 8.09 -2.38 -0.02 -0.26 16 15 C -0.08 -0.04 5.29 -19.87 -0.11 -0.15 16 16 C -0.13 0.02 8.63 22.27 0.19 0.21 16 17 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 18 C -0.14 -0.15 10.05 22.27 0.22 0.07 16 19 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 20 C -0.13 -0.17 9.71 22.27 0.22 0.04 16 21 C -0.12 0.44 7.30 31.12 0.23 0.67 16 22 C 0.13 0.67 7.29 22.67 0.17 0.84 16 23 F -0.14 -1.68 15.55 44.97 0.70 -0.98 16 24 C -0.15 0.37 10.01 22.28 0.22 0.59 16 25 C -0.05 0.34 8.66 22.31 0.19 0.54 16 26 H 0.40 -5.60 8.70 -74.06 -0.64 -6.25 16 27 H 0.12 -0.83 7.96 -2.38 -0.02 -0.85 16 28 H -0.30 -0.34 7.11 99.48 0.71 0.36 16 29 H -0.28 0.88 7.11 99.48 0.71 1.59 16 30 H 0.16 -1.29 6.41 -2.91 -0.02 -1.31 16 31 H 0.41 -2.63 6.74 -92.71 -0.63 -3.26 16 32 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 -0.17 6.32 -2.39 -0.02 -0.18 16 34 H 0.13 -0.51 6.66 -2.91 -0.02 -0.53 16 35 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 36 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.13 -0.19 8.05 -2.91 -0.02 -0.22 16 39 H 0.10 -0.59 7.70 -2.39 -0.02 -0.61 16 40 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.17 -1.09 8.06 -2.91 -0.02 -1.11 16 42 H 0.17 -2.01 4.86 -2.91 -0.01 -2.02 16 Total: 0.00 -22.51 353.52 1.29 -21.23 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.15 Total: -15.43 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 3.01 Total: 9.34 kcal Atomic # 7 Polarization: 0.03 SS G_CDS: -2.35 Total: -2.33 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -1.96 Total: -8.02 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.70 Total: -0.98 kcal Atomic # 14 Polarization: -5.85 SS G_CDS: 2.04 Total: -3.80 kcal Total: -22.51 1.29 -21.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.418 kcal (2) G-P(sol) polarization free energy of solvation -22.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds