Wall clock time and date at job start Sun Mar 7 2021 08:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86302 * 109.47338 * 2 1 4 4 C 1.50702 * 109.47345 * 119.99966 * 2 1 3 5 5 C 1.38238 * 119.99791 * 64.99601 * 4 2 1 6 6 C 1.38234 * 120.00093 * 179.97438 * 5 4 2 7 7 C 1.38241 * 119.99568 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99576 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47064 * 90.00122 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84617 * 23.80039 * 12 11 9 14 14 C 1.53784 * 113.61657 * 154.99545 * 12 11 9 15 15 C 1.53783 * 87.07990 * 139.98018 * 14 12 11 16 16 H 1.08993 * 113.61459 * 89.11928 * 15 14 12 17 17 C 1.50701 * 113.61417 * 219.93871 * 15 14 12 18 18 C 1.38234 * 120.00388 * 59.72604 * 17 15 14 19 19 C 1.38233 * 120.00291 * 179.79037 * 18 17 15 20 20 C 1.38236 * 119.99486 * 0.46546 * 19 18 17 21 21 C 1.38230 * 120.00366 * 359.76200 * 20 19 18 22 22 C 1.38232 * 120.00131 * 0.02994 * 21 20 19 23 23 C 1.53779 * 87.08208 * 334.56947 * 15 14 12 24 24 C 1.38233 * 120.00269 * 0.27212 * 7 6 5 25 25 C 1.38234 * 119.99979 * 359.54072 * 24 7 6 26 26 H 0.96704 * 113.99636 * 300.00113 * 1 2 3 27 27 H 1.09003 * 109.47106 * 240.00029 * 2 1 3 28 28 H 1.48499 * 110.00377 * 178.68287 * 3 2 1 29 29 H 1.48500 * 110.00120 * 300.00241 * 3 2 1 30 30 H 1.08004 * 119.99911 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.99943 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47060 * 210.00086 * 8 7 6 33 33 H 1.09001 * 109.47380 * 330.00174 * 8 7 6 34 34 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 35 35 H 1.08994 * 113.61618 * 254.52876 * 14 12 11 36 36 H 1.09007 * 113.60928 * 25.43373 * 14 12 11 37 37 H 1.08003 * 119.99441 * 359.97438 * 18 17 15 38 38 H 1.07995 * 120.00065 * 180.25018 * 19 18 17 39 39 H 1.08009 * 119.99624 * 179.79500 * 20 19 18 40 40 H 1.08007 * 120.00301 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.00263 * 179.97438 * 22 21 20 42 42 H 1.09008 * 113.61656 * 270.88271 * 23 15 14 43 43 H 1.08998 * 113.61798 * 139.98381 * 23 15 14 44 44 H 1.08003 * 119.99927 * 179.72604 * 24 7 6 45 45 H 1.07998 * 120.00482 * 180.23135 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1459 -2.7120 2.5268 7 6 2.8544 -2.0140 3.4870 8 6 3.3567 -2.7245 4.7174 9 6 4.7377 -3.2679 4.4551 10 8 5.2621 -3.0956 3.3752 11 7 5.3896 -3.9461 5.4202 12 6 6.7322 -4.4738 5.1655 13 1 7.2549 -3.9368 4.3739 14 6 7.5719 -4.6630 6.4399 15 6 8.0800 -5.9735 5.8160 16 1 8.9716 -5.8478 5.2019 17 6 8.2050 -7.1041 6.8046 18 6 7.0924 -7.5418 7.4985 19 6 7.2062 -8.5817 8.4021 20 6 8.4346 -9.1774 8.6189 21 6 9.5482 -8.7366 7.9286 22 6 9.4335 -7.6996 7.0218 23 6 6.7732 -6.0028 5.0060 24 6 3.0966 -0.6632 3.3215 25 6 2.6387 -0.0123 2.1913 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 1.1322 -2.6057 0.6475 31 1 1.9536 -3.7666 2.6577 32 1 3.3943 -2.0239 5.5516 33 1 2.6837 -3.5460 4.9630 34 1 4.9699 -4.0842 6.2839 35 1 8.3492 -3.9096 6.5664 36 1 6.9736 -4.8106 7.3390 37 1 6.1336 -7.0732 7.3323 38 1 6.3362 -8.9263 8.9411 39 1 8.5242 -9.9877 9.3274 40 1 10.5078 -9.2024 8.0978 41 1 10.3036 -7.3549 6.4827 42 1 5.9565 -6.5167 5.5131 43 1 6.9056 -6.3309 3.9751 44 1 3.6463 -0.1170 4.0739 45 1 2.8312 1.0423 2.0601 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:38 Heat of formation + Delta-G solvation = 9.326530 kcal Electronic energy + Delta-G solvation = -25564.030883 eV Core-core repulsion = 21899.338319 eV Total energy + Delta-G solvation = -3664.692564 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.151 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54287 -40.80581 -39.98320 -38.67774 -37.60723 -34.72372 -33.95668 -31.94060 -31.86585 -31.64042 -29.70541 -26.70748 -26.41105 -25.27672 -23.81102 -23.58720 -22.74409 -21.91349 -21.37112 -20.29163 -18.45337 -18.20937 -18.00521 -17.24249 -16.86067 -16.65381 -16.42839 -16.23405 -16.02418 -15.76151 -15.55554 -15.28878 -14.96331 -14.70255 -14.48921 -14.30829 -14.19149 -14.09844 -13.93258 -13.45819 -13.26888 -13.24530 -12.97214 -12.81958 -12.50582 -12.30308 -12.26299 -12.00962 -11.80211 -11.71864 -11.66060 -11.44973 -10.91319 -10.44778 -10.03569 -9.87392 -9.81280 -9.61408 -9.54403 -5.04580 0.24256 0.43493 0.45433 0.50610 1.28837 1.61653 1.63886 1.93033 2.20367 2.79975 2.84208 3.46933 3.50531 3.63937 3.68504 3.73025 3.79406 3.90661 3.93095 4.01483 4.05987 4.07657 4.15418 4.21019 4.29982 4.36217 4.47234 4.48446 4.56210 4.62525 4.63240 4.70720 4.72431 4.74127 4.83099 4.97365 5.01229 5.02334 5.09073 5.11719 5.18178 5.25089 5.38007 5.53673 5.57712 5.59571 5.59615 5.65093 5.74239 6.02137 6.13003 6.58576 6.75737 7.29327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.782 3.218 4 C -0.129 4.129 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.708 5.708 12 C 0.121 3.879 13 H 0.092 0.908 14 C -0.121 4.121 15 C -0.070 4.070 16 H 0.100 0.900 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.110 4.110 25 C -0.122 4.122 26 H 0.395 0.605 27 H 0.099 0.901 28 H -0.293 1.293 29 H -0.297 1.297 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.418 0.582 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 0.117 8.692 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.186 4.186 3 Si 0.688 3.312 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.015 3.985 13 H 0.111 0.889 14 C -0.159 4.159 15 C -0.089 4.089 16 H 0.118 0.882 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.180 4.180 24 C -0.128 4.128 25 C -0.139 4.139 26 H 0.245 0.755 27 H 0.117 0.883 28 H -0.221 1.221 29 H -0.225 1.225 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.256 0.744 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.699 0.522 6.974 7.028 hybrid contribution 0.245 -1.003 -0.285 1.072 sum -0.454 -0.481 6.689 6.722 Atomic orbital electron populations 1.86460 1.17138 1.82235 1.50480 1.25187 0.85350 1.10964 0.97056 0.93761 0.77499 0.75277 0.84618 1.20403 1.00340 0.95130 0.97094 1.21093 0.99469 0.94266 0.97934 1.21235 0.98113 1.00214 0.93906 1.19599 0.97355 0.94039 0.96172 1.20778 0.92625 1.02852 0.97481 1.21101 0.88170 0.77044 0.83660 1.90742 1.69693 1.59461 1.26331 1.45894 1.17237 1.55835 1.17016 1.22388 0.83422 0.93699 0.98949 0.88944 1.23384 0.99247 0.96286 0.97026 1.21308 0.98611 0.93122 0.95842 0.88156 1.19798 0.93590 0.96957 0.97340 1.21217 0.98844 0.97470 0.96608 1.21447 0.98195 0.96486 0.98459 1.21457 0.93199 1.00683 1.00277 1.21420 0.99497 0.97251 0.96725 1.21316 0.97754 0.96918 0.99019 1.23586 0.97681 0.96249 1.00461 1.21253 0.99050 0.94324 0.98172 1.21162 0.98516 1.00034 0.94193 0.75463 0.88309 1.22060 1.22527 0.86097 0.85136 0.84695 0.85251 0.74402 0.90153 0.87856 0.84473 0.84540 0.84988 0.85062 0.85360 0.88321 0.92159 0.83881 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.50 12.83 -148.98 -1.91 -3.41 16 2 C -0.08 -0.22 2.80 71.24 0.20 -0.02 16 3 Si 0.78 0.38 29.80 68.60 2.04 2.43 16 4 C -0.13 -0.50 5.35 -19.86 -0.11 -0.60 16 5 C -0.11 -0.56 9.69 22.27 0.22 -0.35 16 6 C -0.12 -0.39 9.70 22.27 0.22 -0.17 16 7 C -0.07 -0.09 4.37 -19.86 -0.09 -0.17 16 8 C -0.10 0.53 5.83 29.10 0.17 0.70 16 9 C 0.51 0.56 7.82 87.66 0.69 1.24 16 10 O -0.58 -7.06 15.63 -3.02 -0.05 -7.11 16 11 N -0.71 3.18 5.35 -440.04 -2.36 0.82 16 12 C 0.12 -0.21 4.24 45.52 0.19 -0.02 16 13 H 0.09 0.34 7.47 -2.39 -0.02 0.32 16 14 C -0.12 0.61 7.30 31.12 0.23 0.83 16 15 C -0.07 0.17 3.98 -11.01 -0.04 0.13 16 16 H 0.10 -0.23 8.09 -2.39 -0.02 -0.25 16 17 C -0.08 0.01 5.29 -19.86 -0.11 -0.09 16 18 C -0.12 0.17 8.60 22.27 0.19 0.36 16 19 C -0.13 0.08 10.05 22.27 0.22 0.31 16 20 C -0.14 -0.06 10.05 22.27 0.22 0.16 16 21 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 22 C -0.13 -0.14 9.71 22.27 0.22 0.08 16 23 C -0.14 0.26 7.25 31.12 0.23 0.49 16 24 C -0.11 -0.12 9.70 22.27 0.22 0.10 16 25 C -0.12 -0.20 8.67 22.27 0.19 -0.01 16 26 H 0.40 -2.33 8.70 -74.05 -0.64 -2.98 16 27 H 0.10 0.50 7.96 -2.39 -0.02 0.48 16 28 H -0.29 -1.85 7.11 99.48 0.71 -1.14 16 29 H -0.30 -2.20 7.11 99.48 0.71 -1.49 16 30 H 0.12 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 32 H 0.14 -1.51 8.08 -2.39 -0.02 -1.53 16 33 H 0.13 -1.32 8.09 -2.39 -0.02 -1.34 16 34 H 0.42 -4.77 8.73 -92.70 -0.81 -5.58 16 35 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.10 -0.78 7.69 -2.38 -0.02 -0.79 16 37 H 0.14 -0.78 6.68 -2.91 -0.02 -0.80 16 38 H 0.14 -0.60 8.06 -2.91 -0.02 -0.63 16 39 H 0.13 -0.36 8.06 -2.91 -0.02 -0.38 16 40 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.13 -0.18 8.05 -2.91 -0.02 -0.20 16 42 H 0.10 -0.38 6.34 -2.38 -0.02 -0.39 16 43 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 45 H 0.14 -0.40 4.91 -2.91 -0.01 -0.41 16 Total: 0.00 -22.50 373.71 0.60 -21.90 By element: Atomic # 1 Polarization: -17.27 SS G_CDS: -0.40 Total: -17.67 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 3.28 Total: 3.05 kcal Atomic # 7 Polarization: 3.18 SS G_CDS: -2.36 Total: 0.82 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.96 Total: -10.52 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.04 Total: 2.43 kcal Total: -22.50 0.60 -21.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.222 kcal (2) G-P(sol) polarization free energy of solvation -22.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds