Wall clock time and date at job start Sun Mar 7 2021 08:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.47112 * 2 1 4 4 C 1.50700 * 109.46870 * 119.99455 * 2 1 3 5 5 C 1.34455 * 126.48523 * 255.02773 * 4 2 1 6 6 N 1.36561 * 109.98727 * 179.97438 * 5 4 2 7 7 C 1.37835 * 109.86061 * 359.97438 * 6 5 4 8 8 C 1.38644 * 133.38009 * 180.28565 * 7 6 5 9 9 C 1.39324 * 119.66680 * 180.17486 * 8 7 6 10 10 C 1.47573 * 119.83302 * 179.74321 * 9 8 7 11 11 O 1.21592 * 120.00294 * 359.78584 * 10 9 8 12 12 N 1.34774 * 119.99716 * 179.79285 * 10 9 8 13 13 C 1.46504 * 120.00023 * 180.02562 * 12 10 9 14 14 H 1.09003 * 112.84633 * 336.19675 * 13 12 10 15 15 C 1.53778 * 113.61410 * 107.49617 * 13 12 10 16 16 C 1.53788 * 87.08063 * 139.98288 * 15 13 12 17 17 H 1.09000 * 113.61201 * 89.11307 * 16 15 13 18 18 C 1.50694 * 113.61471 * 220.01912 * 16 15 13 19 19 C 1.38233 * 120.00008 * 37.22215 * 18 16 15 20 20 C 1.38235 * 119.99779 * 179.78768 * 19 18 16 21 21 C 1.38233 * 120.00136 * 0.46072 * 20 19 18 22 22 C 1.38234 * 120.00158 * 359.77230 * 21 20 19 23 23 C 1.38237 * 119.99854 * 217.49875 * 18 16 15 24 24 C 1.53779 * 87.07933 * 334.56925 * 16 15 13 25 25 C 1.40201 * 120.33367 * 359.53162 * 9 8 7 26 26 C 1.36236 * 120.37610 * 0.21335 * 25 9 8 27 27 C 1.39872 * 119.96071 * 0.02562 * 26 25 9 28 28 H 0.96701 * 114.00295 * 300.00471 * 1 2 3 29 29 H 1.08995 * 109.47254 * 239.99180 * 2 1 3 30 30 H 1.48507 * 109.99994 * 299.99619 * 3 2 1 31 31 H 1.48500 * 110.00139 * 61.31287 * 3 2 1 32 32 H 1.07997 * 125.00513 * 359.97438 * 5 4 2 33 33 H 0.97001 * 125.07618 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.16580 * 359.97438 * 8 7 6 35 35 H 0.96999 * 120.00321 * 359.97438 * 12 10 9 36 36 H 1.09000 * 113.61552 * 254.52694 * 15 13 12 37 37 H 1.08996 * 113.61902 * 25.43570 * 15 13 12 38 38 H 1.08003 * 120.00083 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.00043 * 180.25435 * 20 19 18 40 40 H 1.08001 * 120.00382 * 179.78468 * 21 20 19 41 41 H 1.08004 * 120.00489 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99956 * 359.97438 * 23 18 16 43 43 H 1.08997 * 113.61378 * 270.88421 * 24 16 15 44 44 H 1.08999 * 113.61593 * 139.98145 * 24 16 15 45 45 H 1.07996 * 119.81568 * 180.23179 * 25 9 8 46 46 H 1.07999 * 120.01928 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.4611 -0.1361 2.3248 6 7 2.8025 -1.0944 3.2359 7 6 2.4934 -2.3429 2.7404 8 6 2.6248 -3.6273 3.2457 9 6 2.2116 -4.7153 2.4798 10 6 2.3550 -6.0843 3.0118 11 8 2.8363 -6.2609 4.1144 12 7 1.9525 -7.1389 2.2755 13 6 2.0943 -8.4980 2.8038 14 1 2.8729 -8.5781 3.5624 15 6 0.7598 -9.1403 3.2178 16 6 1.2914 -10.4491 2.6099 17 1 1.8496 -11.0635 3.3163 18 6 0.2493 -11.2287 1.8502 19 6 -0.6989 -10.5627 1.0964 20 6 -1.6521 -11.2781 0.3960 21 6 -1.6629 -12.6591 0.4569 22 6 -0.7176 -13.3249 1.2145 23 6 0.2382 -12.6097 1.9116 24 6 2.1846 -9.5771 1.7119 25 6 1.6562 -4.5158 1.2081 26 6 1.5187 -3.2568 0.7061 27 6 1.9334 -2.1547 1.4610 28 1 -0.3934 0.4418 0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5616 2.4679 -1.2086 31 1 1.5878 2.4586 1.2241 32 1 2.5967 0.9264 2.4629 33 1 3.2029 -0.9222 4.1025 34 1 3.0483 -3.7838 4.2268 35 1 1.5682 -6.9981 1.3960 36 1 0.6143 -9.1877 4.2971 37 1 -0.1030 -8.7329 2.6909 38 1 -0.6927 -9.4837 1.0517 39 1 -2.3905 -10.7580 -0.1962 40 1 -2.4097 -13.2179 -0.0875 41 1 -0.7262 -14.4038 1.2625 42 1 0.9766 -13.1298 2.5038 43 1 1.7114 -9.2891 0.7732 44 1 3.1894 -9.9770 1.5753 45 1 1.3352 -5.3650 0.6231 46 1 1.0897 -3.1097 -0.2740 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:41 Heat of formation + Delta-G solvation = 49.836985 kcal Electronic energy + Delta-G solvation = -28669.098004 eV Core-core repulsion = 24684.283913 eV Total energy + Delta-G solvation = -3984.814091 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46330 -41.49352 -40.39567 -38.77676 -37.93709 -37.48098 -34.81230 -33.26014 -31.91861 -31.69746 -30.72208 -30.44254 -26.71191 -26.62293 -26.18123 -24.48159 -23.63805 -23.55146 -22.32226 -21.50811 -20.83709 -20.33689 -19.36623 -18.35721 -18.24822 -17.54327 -17.12108 -16.96515 -16.46731 -16.24940 -16.06155 -16.00359 -15.65564 -15.48802 -15.32232 -15.07394 -14.88914 -14.75941 -14.44840 -14.28519 -14.16506 -13.93355 -13.89130 -13.45379 -13.16781 -13.05758 -12.63770 -12.53457 -12.49203 -12.29311 -12.20200 -11.80694 -11.77005 -11.65840 -11.45544 -11.03806 -10.78428 -10.44717 -10.12390 -9.80301 -9.54057 -9.35977 -8.79446 -4.83162 -0.32043 0.38001 0.44484 0.51604 1.38999 1.40397 1.64578 1.88925 1.92267 2.05315 2.27601 2.84298 2.87710 3.45528 3.56234 3.59695 3.68591 3.72210 3.74329 3.87374 3.91528 3.94034 4.06215 4.12292 4.15609 4.19188 4.30340 4.31339 4.49298 4.51826 4.58141 4.60307 4.63484 4.71050 4.74318 4.81446 4.83646 4.97543 4.98219 5.01897 5.11268 5.18150 5.21360 5.23690 5.42219 5.47867 5.56218 5.60304 5.62174 5.65935 5.75409 5.98690 6.13934 6.47796 6.52004 6.62632 7.14049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.048 4.048 3 Si 0.773 3.227 4 C -0.224 4.224 5 C 0.090 3.910 6 N -0.577 5.577 7 C 0.067 3.933 8 C -0.068 4.068 9 C -0.136 4.136 10 C 0.562 3.438 11 O -0.583 6.583 12 N -0.701 5.701 13 C 0.119 3.881 14 H 0.100 0.900 15 C -0.142 4.142 16 C -0.067 4.067 17 H 0.106 0.894 18 C -0.076 4.076 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.083 4.083 27 C -0.080 4.080 28 H 0.384 0.616 29 H 0.114 0.886 30 H -0.309 1.309 31 H -0.269 1.269 32 H 0.207 0.793 33 H 0.434 0.566 34 H 0.128 0.872 35 H 0.415 0.585 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.152 0.848 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 2.184 -2.252 3.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.677 3.323 4 C -0.232 4.232 5 C -0.040 4.040 6 N -0.180 5.180 7 C -0.040 4.040 8 C -0.089 4.089 9 C -0.141 4.141 10 C 0.351 3.649 11 O -0.465 6.465 12 N -0.352 5.352 13 C 0.014 3.986 14 H 0.118 0.882 15 C -0.181 4.181 16 C -0.086 4.086 17 H 0.124 0.876 18 C -0.076 4.076 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.161 4.161 25 C -0.127 4.127 26 C -0.102 4.102 27 C -0.085 4.085 28 H 0.232 0.768 29 H 0.132 0.868 30 H -0.237 1.237 31 H -0.195 1.195 32 H 0.223 0.777 33 H 0.274 0.726 34 H 0.146 0.854 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.169 0.831 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.697 2.590 -1.894 3.630 hybrid contribution -1.186 -0.271 0.711 1.409 sum 0.511 2.319 -1.183 2.653 Atomic orbital electron populations 1.86574 1.19162 1.80463 1.49927 1.24559 0.82707 1.11304 0.97127 0.94157 0.89997 0.71166 0.76972 1.20757 1.11938 0.91489 0.98988 1.22287 0.97699 0.95580 0.88391 1.41803 1.54143 1.03302 1.18783 1.18123 1.03863 0.86782 0.95192 1.20135 0.99907 0.88841 1.00025 1.19476 1.06148 0.91755 0.96687 1.18424 0.76726 0.85527 0.84237 1.90760 1.46842 1.86816 1.22045 1.45792 1.62978 1.05316 1.21101 1.22538 0.98519 0.79631 0.97905 0.88157 1.23604 0.97860 0.95099 1.01513 1.21305 0.95385 0.94367 0.97524 0.87593 1.19786 0.96464 0.93671 0.97717 1.21217 0.95125 1.00636 0.97334 1.21433 0.99141 0.94538 0.99563 1.21450 0.99418 0.95074 0.99641 1.21429 0.95350 1.00816 0.97237 1.21322 0.99403 0.93936 1.00126 1.23401 1.01076 0.94061 0.97534 1.20898 0.99588 0.98143 0.94045 1.20411 0.98962 0.90622 1.00162 1.19545 1.00941 0.94174 0.93812 0.76753 0.86829 1.23684 1.19487 0.77660 0.72588 0.85442 0.74688 0.91610 0.88602 0.84763 0.84718 0.84997 0.84944 0.85104 0.88106 0.89741 0.83069 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.15 12.88 -148.98 -1.92 -3.06 16 2 C -0.05 0.08 3.06 71.24 0.22 0.30 16 3 Si 0.77 -3.68 30.82 68.60 2.11 -1.56 16 4 C -0.22 0.16 5.57 -18.64 -0.10 0.05 16 5 C 0.09 -0.43 10.43 83.09 0.87 0.44 16 6 N -0.58 1.78 6.07 -187.72 -1.14 0.64 16 7 C 0.07 0.20 7.26 38.95 0.28 0.49 16 8 C -0.07 -0.38 9.61 22.63 0.22 -0.16 16 9 C -0.14 -0.66 5.87 -20.08 -0.12 -0.78 16 10 C 0.56 4.04 7.76 86.71 0.67 4.71 16 11 O -0.58 -8.89 15.91 -4.00 -0.06 -8.95 16 12 N -0.70 -0.23 5.30 -443.16 -2.35 -2.58 16 13 C 0.12 0.04 4.24 45.52 0.19 0.23 16 14 H 0.10 0.45 7.46 -2.39 -0.02 0.43 16 15 C -0.14 0.06 7.25 31.12 0.23 0.29 16 16 C -0.07 0.11 3.98 -11.01 -0.04 0.07 16 17 H 0.11 -0.25 8.10 -2.39 -0.02 -0.27 16 18 C -0.08 -0.05 5.29 -19.87 -0.11 -0.16 16 19 C -0.13 -0.01 8.62 22.27 0.19 0.18 16 20 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 21 C -0.14 -0.18 10.05 22.27 0.22 0.05 16 22 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 23 C -0.13 -0.18 9.71 22.27 0.22 0.03 16 24 C -0.12 0.42 7.30 31.12 0.23 0.65 16 25 C -0.11 -0.04 9.46 22.28 0.21 0.17 16 26 C -0.08 -0.15 10.03 22.20 0.22 0.07 16 27 C -0.08 -0.26 6.35 -20.14 -0.13 -0.39 16 28 H 0.38 -1.40 8.70 -74.06 -0.64 -2.05 16 29 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H -0.31 -1.29 7.11 99.48 0.71 -0.58 16 31 H -0.27 0.88 7.00 99.48 0.70 1.58 16 32 H 0.21 -2.38 6.27 -2.91 -0.02 -2.40 16 33 H 0.43 -3.67 8.96 -92.71 -0.83 -4.50 16 34 H 0.13 0.79 7.62 -2.91 -0.02 0.77 16 35 H 0.41 -2.29 6.72 -92.71 -0.62 -2.91 16 36 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.10 -0.16 6.30 -2.39 -0.02 -0.17 16 38 H 0.13 -0.48 6.64 -2.91 -0.02 -0.50 16 39 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 42 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 43 H 0.10 -0.55 7.71 -2.39 -0.02 -0.57 16 44 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.15 -0.94 6.36 -2.91 -0.02 -0.96 16 46 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 Total: 0.00 -22.51 382.39 -0.46 -22.97 By element: Atomic # 1 Polarization: -12.85 SS G_CDS: -1.02 Total: -13.87 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 3.92 Total: 6.42 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -3.49 Total: -1.94 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.98 Total: -12.02 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.11 Total: -1.56 kcal Total: -22.51 -0.46 -22.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.805 kcal (2) G-P(sol) polarization free energy of solvation -22.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds