Wall clock time and date at job start Sun Mar 7 2021 08:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.37940 * 119.92390 * 64.72674 * 4 2 1 6 6 C 1.39602 * 119.87435 * 179.76907 * 5 4 2 7 7 C 1.47840 * 120.13964 * 180.25362 * 6 5 4 8 8 O 1.21554 * 120.00215 * 0.23400 * 7 6 5 9 9 N 1.34784 * 120.00258 * 180.22825 * 7 6 5 10 10 C 1.46495 * 120.00396 * 179.97438 * 9 7 6 11 11 H 1.09007 * 112.85144 * 336.20319 * 10 9 7 12 12 C 1.53784 * 113.61030 * 107.50243 * 10 9 7 13 13 C 1.53780 * 87.07888 * 139.98336 * 12 10 9 14 14 H 1.09008 * 113.69165 * 89.12797 * 13 12 10 15 15 C 1.50700 * 113.61860 * 220.01858 * 13 12 10 16 16 C 1.38237 * 119.99650 * 37.21921 * 15 13 12 17 17 C 1.38233 * 120.00001 * 179.76778 * 16 15 13 18 18 C 1.38234 * 119.99657 * 0.48769 * 17 16 15 19 19 C 1.38238 * 120.00520 * 359.79335 * 18 17 16 20 20 C 1.38231 * 119.99611 * 359.95116 * 19 18 17 21 21 C 1.53778 * 113.61806 * 205.00175 * 10 9 7 22 22 C 1.39541 * 119.72114 * 0.48399 * 6 5 4 23 23 C 1.38076 * 119.84199 * 359.76832 * 22 6 5 24 24 Br 1.89103 * 119.93998 * 180.02562 * 23 22 6 25 25 C 1.38373 * 119.92087 * 245.00529 * 4 2 1 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.08005 * 120.06121 * 359.97438 * 5 4 2 31 31 H 0.97005 * 119.99611 * 0.02562 * 9 7 6 32 32 H 1.09005 * 113.61494 * 254.52910 * 12 10 9 33 33 H 1.08996 * 113.61754 * 25.43587 * 12 10 9 34 34 H 1.07999 * 119.99680 * 0.02562 * 16 15 13 35 35 H 1.07995 * 120.00348 * 180.25951 * 17 16 15 36 36 H 1.08005 * 120.00268 * 179.76842 * 18 17 16 37 37 H 1.07998 * 120.00449 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99962 * 180.02562 * 20 19 18 39 39 H 1.08996 * 113.60992 * 334.56870 * 21 10 9 40 40 H 1.09002 * 113.61620 * 105.47175 * 21 10 9 41 41 H 1.08001 * 120.08315 * 179.79004 * 22 6 5 42 42 H 1.07998 * 119.85897 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.6794 -2.0560 1.3993 6 6 2.1492 -2.7140 2.5373 7 6 1.8874 -4.1573 2.7215 8 8 1.2655 -4.7746 1.8790 9 7 2.3384 -4.7889 3.8235 10 6 2.0785 -6.2190 4.0062 11 1 1.2079 -6.5656 3.4493 12 6 3.3243 -7.1005 3.8168 13 6 2.8232 -7.9286 5.0118 14 1 2.1570 -8.7444 4.7308 15 6 3.9217 -8.3658 5.9463 16 6 4.9825 -7.5195 6.2098 17 6 5.9877 -7.9186 7.0708 18 6 5.9371 -9.1678 7.6604 19 6 4.8792 -10.0164 7.3925 20 6 3.8714 -9.6153 6.5356 21 6 2.0847 -6.6631 5.4785 22 6 2.8629 -2.0026 3.5027 23 6 3.1039 -0.6548 3.3245 24 35 4.0713 0.3117 4.6305 25 6 2.6391 -0.0098 2.1913 26 1 -0.3934 0.4417 0.7649 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 1.1225 -2.6002 0.6508 31 1 2.8344 -4.2962 4.4960 32 1 3.3306 -7.6511 2.8760 33 1 4.2617 -6.5789 4.0094 34 1 5.0238 -6.5450 5.7462 35 1 6.8143 -7.2558 7.2799 36 1 6.7243 -9.4811 8.3302 37 1 4.8400 -10.9926 7.8528 38 1 3.0447 -10.2781 6.3266 39 1 2.6833 -6.0218 6.1254 40 1 1.0904 -6.8604 5.8793 41 1 3.2261 -2.5051 4.3870 42 1 2.8300 1.0446 2.0563 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:00 Heat of formation + Delta-G solvation = 21.965403 kcal Electronic energy + Delta-G solvation = -26031.539608 eV Core-core repulsion = 22183.114723 eV Total energy + Delta-G solvation = -3848.424885 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.046 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81204 -40.97425 -39.91628 -38.66787 -37.67768 -35.03018 -33.62122 -33.02871 -31.82344 -31.50821 -30.46050 -27.09928 -26.73135 -26.58484 -24.81468 -23.57106 -22.83098 -22.37348 -21.56129 -20.38943 -19.06927 -18.32501 -17.78413 -17.60265 -17.19055 -16.69554 -16.43382 -16.31250 -16.09586 -15.88608 -15.58467 -15.32160 -15.04635 -14.96674 -14.38125 -14.29675 -14.23092 -14.06508 -13.94460 -13.47062 -13.30094 -13.15331 -13.02629 -12.55906 -12.31843 -12.22891 -11.98319 -11.95229 -11.83078 -11.69111 -11.49412 -11.41624 -11.13874 -10.56929 -10.35477 -10.09495 -9.91656 -9.80817 -9.54491 -5.05997 -0.52769 -0.17060 0.42846 0.43812 0.51132 1.20860 1.49853 1.59445 1.90799 1.99228 2.45013 2.84432 3.26378 3.33506 3.45007 3.54682 3.67078 3.70439 3.80636 3.86626 3.92276 3.95528 4.05206 4.14152 4.18049 4.20021 4.28052 4.30352 4.47482 4.55290 4.62473 4.68501 4.72621 4.74905 4.82571 4.91565 4.95397 5.00729 5.06201 5.10220 5.16511 5.20524 5.35759 5.48926 5.59696 5.65566 5.74301 6.13402 6.35934 6.71227 7.02250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.075 4.075 3 Si 0.771 3.229 4 C -0.117 4.117 5 C -0.031 4.031 6 C -0.136 4.136 7 C 0.560 3.440 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.119 3.881 11 H 0.102 0.898 12 C -0.142 4.142 13 C -0.067 4.067 14 H 0.105 0.895 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.044 4.044 23 C -0.099 4.099 24 Br -0.027 7.027 25 C -0.059 4.059 26 H 0.397 0.603 27 H 0.112 0.888 28 H -0.277 1.277 29 H -0.294 1.294 30 H 0.129 0.871 31 H 0.415 0.585 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.162 0.838 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 2.562 5.862 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.185 4.185 3 Si 0.676 3.324 4 C -0.118 4.118 5 C -0.050 4.050 6 C -0.140 4.140 7 C 0.348 3.652 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.014 3.986 11 H 0.120 0.880 12 C -0.181 4.181 13 C -0.086 4.086 14 H 0.123 0.877 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.064 4.064 23 C -0.178 4.178 24 Br 0.059 6.941 25 C -0.078 4.078 26 H 0.247 0.753 27 H 0.129 0.871 28 H -0.204 1.204 29 H -0.221 1.221 30 H 0.147 0.853 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.180 0.820 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.156 2.753 4.827 5.960 hybrid contribution 0.093 -0.950 -0.430 1.047 sum 2.250 1.803 4.397 5.258 Atomic orbital electron populations 1.86515 1.16854 1.82159 1.50547 1.25256 0.85600 1.11068 0.96545 0.93886 0.78323 0.74684 0.85509 1.20338 0.99929 0.94020 0.97527 1.21265 0.94211 0.93805 0.95729 1.19882 1.03620 0.93183 0.97331 1.18392 0.78242 0.86782 0.81799 1.90799 1.42234 1.68207 1.44131 1.45813 1.56530 1.10554 1.22146 1.22569 0.98911 0.78996 0.98098 0.88022 1.23608 0.98601 0.97508 0.98350 1.21302 0.95600 0.97275 0.94429 0.87650 1.19790 0.95891 0.94332 0.97663 1.21216 0.94053 1.00337 0.98641 1.21434 0.99310 0.96780 0.97125 1.21453 0.98938 0.94701 1.00512 1.21425 0.94571 1.00423 0.98450 1.21320 0.99432 0.96388 0.97673 1.23408 1.02052 0.95924 0.94675 1.21459 0.94354 0.92244 0.98347 1.21747 1.04030 0.95279 0.96791 1.96866 1.72213 1.73437 1.51600 1.21378 0.94499 1.00593 0.91379 0.75270 0.87088 1.20359 1.22133 0.85267 0.74698 0.91586 0.88459 0.84641 0.84678 0.85043 0.85023 0.85162 0.87977 0.89687 0.82021 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.11 12.83 -148.98 -1.91 -1.81 16 2 C -0.08 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.77 -2.83 29.79 68.60 2.04 -0.79 16 4 C -0.12 0.13 5.35 -19.90 -0.11 0.02 16 5 C -0.03 -0.08 9.22 22.53 0.21 0.13 16 6 C -0.14 -0.15 5.87 -20.09 -0.12 -0.26 16 7 C 0.56 2.44 7.77 86.78 0.67 3.11 16 8 O -0.57 -7.58 15.95 -3.89 -0.06 -7.64 16 9 N -0.70 1.62 5.31 -442.90 -2.35 -0.73 16 10 C 0.12 -0.20 4.24 45.52 0.19 0.00 16 11 H 0.10 0.27 7.46 -2.38 -0.02 0.25 16 12 C -0.14 0.30 7.25 31.12 0.23 0.52 16 13 C -0.07 0.20 3.98 -11.01 -0.04 0.16 16 14 H 0.11 -0.36 8.09 -2.38 -0.02 -0.38 16 15 C -0.08 0.04 5.29 -19.86 -0.11 -0.07 16 16 C -0.12 0.15 8.62 22.27 0.19 0.35 16 17 C -0.13 0.06 10.05 22.27 0.22 0.28 16 18 C -0.14 -0.07 10.05 22.27 0.22 0.16 16 19 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 20 C -0.13 -0.08 9.71 22.27 0.22 0.14 16 21 C -0.12 0.63 7.30 31.12 0.23 0.86 16 22 C -0.04 0.16 9.28 22.55 0.21 0.37 16 23 C -0.10 0.32 6.22 22.28 0.14 0.46 16 24 Br -0.03 0.10 33.69 -20.37 -0.69 -0.59 16 25 C -0.06 0.20 8.40 22.35 0.19 0.39 16 26 H 0.40 -3.47 8.70 -74.06 -0.64 -4.11 16 27 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 28 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 29 H -0.29 -1.18 7.11 99.48 0.71 -0.47 16 30 H 0.13 0.80 7.65 -2.91 -0.02 0.78 16 31 H 0.41 -3.51 6.76 -92.70 -0.63 -4.14 16 32 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 33 H 0.10 -0.35 6.30 -2.39 -0.02 -0.36 16 34 H 0.14 -0.71 6.64 -2.91 -0.02 -0.73 16 35 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.10 -0.75 7.71 -2.39 -0.02 -0.77 16 40 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.16 -1.52 6.40 -2.91 -0.02 -1.54 16 42 H 0.16 -1.14 4.89 -2.91 -0.01 -1.15 16 Total: 0.00 -18.41 370.31 -0.15 -18.56 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.15 Total: -14.05 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 2.97 Total: 7.03 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: -2.35 Total: -0.73 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -1.97 Total: -9.44 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.04 Total: -0.79 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.69 Total: -0.59 kcal Total: -18.41 -0.15 -18.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.524 kcal (2) G-P(sol) polarization free energy of solvation -18.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds