Wall clock time and date at job start Sun Mar 7 2021 08:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86294 * 109.47404 * 2 1 4 4 C 1.50700 * 109.47105 * 120.00209 * 2 1 3 5 5 C 1.38403 * 119.82969 * 64.99912 * 4 2 1 6 6 C 1.37892 * 120.17260 * 179.97438 * 5 4 2 7 7 C 1.39840 * 119.82135 * 0.02562 * 6 5 4 8 8 C 1.47213 * 120.16558 * 179.97438 * 7 6 5 9 9 C 1.34809 * 119.99724 * 179.97438 * 8 7 6 10 10 C 1.46430 * 119.99383 * 179.97438 * 9 8 7 11 11 O 1.21689 * 120.00725 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99640 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00280 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.90520 * 23.75201 * 13 12 10 15 15 C 1.53785 * 113.61606 * 154.99844 * 13 12 10 16 16 C 1.53774 * 87.07876 * 139.98449 * 15 13 12 17 17 H 1.09002 * 113.61343 * 89.20327 * 16 15 13 18 18 C 1.50702 * 113.61783 * 220.01845 * 16 15 13 19 19 C 1.38234 * 120.00257 * 240.00702 * 18 16 15 20 20 C 1.38238 * 119.99675 * 180.25732 * 19 18 16 21 21 C 1.38228 * 120.00114 * 359.50218 * 20 19 18 22 22 C 1.38234 * 120.00051 * 0.47390 * 21 20 19 23 23 C 1.38235 * 119.99522 * 59.97714 * 18 16 15 24 24 C 1.53770 * 113.61950 * 252.50095 * 13 12 10 25 25 C 1.39834 * 119.66336 * 0.24889 * 7 6 5 26 26 C 1.37887 * 119.82492 * 359.51774 * 25 7 6 27 27 H 0.96692 * 114.00122 * 59.99635 * 1 2 3 28 28 H 1.09002 * 109.46942 * 239.99593 * 2 1 3 29 29 H 1.48499 * 109.99938 * 59.99820 * 3 2 1 30 30 H 1.48496 * 110.00180 * 181.31872 * 3 2 1 31 31 H 1.07997 * 119.91549 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.08795 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99942 * 359.97438 * 8 7 6 34 34 H 1.07993 * 120.00301 * 0.02562 * 9 8 7 35 35 H 0.97002 * 120.00100 * 0.02562 * 12 10 9 36 36 H 1.09000 * 113.61136 * 25.43850 * 15 13 12 37 37 H 1.09002 * 113.61598 * 254.53238 * 15 13 12 38 38 H 1.08002 * 119.99744 * 359.97115 * 19 18 16 39 39 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 40 40 H 1.07999 * 119.99925 * 180.25942 * 21 20 19 41 41 H 1.08001 * 120.00294 * 179.78842 * 22 21 20 42 42 H 1.07996 * 120.00471 * 0.02562 * 23 18 16 43 43 H 1.09001 * 113.61537 * 105.46824 * 24 13 12 44 44 H 1.09000 * 113.61528 * 334.56612 * 24 13 12 45 45 H 1.08006 * 120.08128 * 179.75000 * 25 7 6 46 46 H 1.08002 * 119.91498 * 180.22662 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6824 -2.0619 1.3949 6 6 2.1392 -2.7192 2.5178 7 6 2.8552 -2.0163 3.4919 8 6 3.3459 -2.7103 4.6939 9 6 4.0362 -2.0296 5.6306 10 6 4.5238 -2.7198 6.8264 11 8 4.3063 -3.9079 6.9745 12 7 5.2144 -2.0394 7.7626 13 6 5.7018 -2.7297 8.9594 14 1 5.8212 -3.8030 8.8110 15 6 6.9257 -2.0570 9.6031 16 6 6.2835 -2.3705 10.9647 17 1 6.5630 -3.3450 11.3652 18 6 6.4312 -1.2595 11.9721 19 6 7.0934 -1.4902 13.1634 20 6 7.2243 -0.4725 14.0897 21 6 6.7019 0.7787 13.8203 22 6 6.0401 1.0095 12.6289 23 6 5.9050 -0.0095 11.7046 24 6 4.9283 -2.3669 10.2379 25 6 3.0976 -0.6498 3.3212 26 6 2.6384 -0.0078 2.1906 27 1 -0.3933 0.4417 -0.7649 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5346 1.7702 -0.0321 31 1 1.1289 -2.6032 0.6419 32 1 1.9438 -3.7737 2.6449 33 1 3.1528 -3.7648 4.8252 34 1 4.2289 -0.9751 5.4994 35 1 5.3881 -1.0924 7.6445 36 1 6.9999 -0.9905 9.3906 37 1 7.8599 -2.5906 9.4277 38 1 7.5045 -2.4668 13.3723 39 1 7.7378 -0.6539 15.0223 40 1 6.8078 1.5749 14.5423 41 1 5.6290 1.9861 12.4198 42 1 5.3877 0.1707 10.7739 43 1 4.2499 -3.1507 10.5750 44 1 4.4563 -1.3852 10.1989 45 1 3.6464 -0.0995 4.0712 46 1 2.8280 1.0468 2.0555 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:07 Heat of formation + Delta-G solvation = 27.790980 kcal Electronic energy + Delta-G solvation = -26266.446467 eV Core-core repulsion = 22474.328441 eV Total energy + Delta-G solvation = -3792.118026 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.151 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48977 -40.72881 -40.16580 -38.71256 -37.77393 -35.16494 -34.65158 -32.34860 -31.93340 -31.74475 -31.20982 -27.47368 -26.77999 -25.98106 -24.21527 -23.90497 -23.55992 -22.41341 -21.74729 -20.85955 -20.01939 -18.67432 -18.46908 -18.20640 -17.39636 -17.09252 -16.67029 -16.53213 -16.21243 -15.93748 -15.78127 -15.36248 -15.30845 -15.18607 -14.91679 -14.40583 -14.33651 -14.20496 -14.03702 -13.95362 -13.82944 -13.60883 -13.55478 -13.13696 -12.99873 -12.58732 -12.36062 -12.33519 -12.03117 -11.95925 -11.84851 -11.71883 -11.47727 -11.34528 -10.85977 -10.39265 -10.07755 -10.04435 -9.83328 -9.57137 -9.29725 -5.04202 -0.59130 0.29169 0.41439 0.48606 0.87335 1.20073 1.57079 1.89064 2.19491 2.26913 2.71984 2.81843 3.29391 3.40218 3.51472 3.62018 3.66914 3.68661 3.74505 3.82482 3.87115 3.99009 4.07003 4.09136 4.10042 4.16623 4.20854 4.22838 4.27793 4.44857 4.52171 4.57092 4.62238 4.67870 4.73109 4.75299 4.86986 4.90644 4.96131 5.00976 5.06492 5.07302 5.12470 5.20196 5.30785 5.39350 5.53140 5.55130 5.56320 5.62492 5.71218 5.79239 6.08498 6.51365 6.53914 7.25472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.075 4.075 3 Si 0.683 3.317 4 C -0.063 4.063 5 C -0.091 4.091 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.014 4.014 9 C -0.216 4.216 10 C 0.549 3.451 11 O -0.543 6.543 12 N -0.717 5.717 13 C 0.122 3.878 14 H 0.118 0.882 15 C -0.135 4.135 16 C -0.071 4.071 17 H 0.103 0.897 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.094 4.094 26 C -0.125 4.125 27 H 0.383 0.617 28 H 0.076 0.924 29 H -0.250 1.250 30 H -0.254 1.254 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 4.175 -3.203 5.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.185 4.185 3 Si 0.585 3.415 4 C -0.063 4.063 5 C -0.109 4.109 6 C -0.108 4.108 7 C -0.073 4.073 8 C -0.034 4.034 9 C -0.237 4.237 10 C 0.339 3.661 11 O -0.421 6.421 12 N -0.366 5.366 13 C 0.017 3.983 14 H 0.136 0.864 15 C -0.174 4.174 16 C -0.090 4.090 17 H 0.121 0.879 18 C -0.070 4.070 19 C -0.134 4.134 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.183 4.183 25 C -0.112 4.112 26 C -0.143 4.143 27 H 0.231 0.769 28 H 0.094 0.906 29 H -0.175 1.175 30 H -0.179 1.179 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.139 3.604 -2.112 4.330 hybrid contribution 0.176 0.077 0.226 0.296 sum 1.315 3.681 -1.886 4.340 Atomic orbital electron populations 1.86494 1.17023 1.81843 1.49762 1.24727 0.85888 1.10501 0.97430 0.95242 0.80791 0.78087 0.87409 1.19530 0.97640 0.94322 0.94810 1.20989 0.98469 0.93605 0.97886 1.21477 0.96062 1.00258 0.93027 1.19060 0.99857 0.93455 0.94970 1.22408 0.90764 1.00050 0.90134 1.22906 1.04293 1.00824 0.95629 1.18352 0.77843 0.86797 0.83142 1.90829 1.57333 1.15334 1.78637 1.45862 1.56458 1.13069 1.21259 1.22541 0.94272 0.98703 0.82746 0.86411 1.23454 0.97874 1.01710 0.94324 1.21334 0.97343 0.97612 0.92702 0.87897 1.19641 0.97959 0.94399 0.94958 1.21091 0.99268 0.99377 0.93645 1.21195 0.99678 0.93298 0.99365 1.21198 0.98447 0.97235 0.97343 1.21168 0.99106 0.99093 0.94229 1.20987 1.00253 0.92778 0.99581 1.23616 0.96484 1.03026 0.95219 1.21300 0.98956 0.93776 0.97161 1.20833 0.99930 0.99047 0.94468 0.76891 0.90577 1.17500 1.17914 0.84964 0.84773 0.84300 0.85316 0.76382 0.89279 0.90238 0.86012 0.85973 0.86066 0.86055 0.86211 0.90512 0.89254 0.85097 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.05 12.81 -35.23 -0.45 -0.41 16 2 C -0.07 0.03 2.79 36.01 0.10 0.13 16 3 Si 0.68 -0.98 29.84 -169.99 -5.07 -6.05 16 4 C -0.06 -0.12 5.39 -104.50 -0.56 -0.68 16 5 C -0.09 -0.13 9.66 -39.65 -0.38 -0.52 16 6 C -0.09 -0.10 9.80 -39.11 -0.38 -0.48 16 7 C -0.07 -0.10 5.87 -105.06 -0.62 -0.72 16 8 C -0.01 -0.02 9.46 -37.15 -0.35 -0.37 16 9 C -0.22 -0.13 9.41 -37.50 -0.35 -0.48 16 10 C 0.55 1.39 7.74 -12.96 -0.10 1.29 16 11 O -0.54 -3.51 15.83 5.20 0.08 -3.43 16 12 N -0.72 0.15 5.35 -54.41 -0.29 -0.14 16 13 C 0.12 0.00 4.24 -67.12 -0.28 -0.29 16 14 H 0.12 0.19 7.46 -51.93 -0.39 -0.19 16 15 C -0.14 0.19 7.30 -25.92 -0.19 0.00 16 16 C -0.07 0.05 3.98 -90.96 -0.36 -0.31 16 17 H 0.10 -0.12 8.09 -51.93 -0.42 -0.54 16 18 C -0.07 -0.04 5.29 -104.62 -0.55 -0.59 16 19 C -0.12 -0.09 9.71 -39.58 -0.38 -0.47 16 20 C -0.12 -0.09 10.05 -39.59 -0.40 -0.48 16 21 C -0.12 -0.09 10.05 -39.59 -0.40 -0.48 16 22 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 23 C -0.12 -0.04 8.61 -39.58 -0.34 -0.38 16 24 C -0.14 0.04 7.25 -25.93 -0.19 -0.15 16 25 C -0.09 -0.10 9.41 -39.11 -0.37 -0.47 16 26 C -0.13 -0.23 8.65 -39.65 -0.34 -0.57 16 27 H 0.38 -1.96 8.74 45.56 0.40 -1.57 16 28 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H -0.25 -0.41 7.04 56.52 0.40 -0.02 16 30 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 31 H 0.13 0.02 8.06 -52.49 -0.42 -0.41 16 32 H 0.13 -0.10 8.06 -52.49 -0.42 -0.53 16 33 H 0.14 0.23 7.52 -52.49 -0.39 -0.16 16 34 H 0.13 -0.26 6.07 -52.49 -0.32 -0.58 16 35 H 0.40 -1.16 8.71 -40.82 -0.36 -1.52 16 36 H 0.09 -0.17 7.70 -51.93 -0.40 -0.57 16 37 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 38 H 0.12 -0.09 8.05 -52.49 -0.42 -0.51 16 39 H 0.12 -0.11 8.06 -52.48 -0.42 -0.53 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 41 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 42 H 0.12 -0.14 6.66 -52.49 -0.35 -0.49 16 43 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.09 -0.05 6.31 -51.93 -0.33 -0.38 16 45 H 0.13 -0.16 6.17 -52.48 -0.32 -0.48 16 46 H 0.12 0.14 4.84 -52.49 -0.25 -0.11 16 LS Contribution 383.53 15.07 5.78 5.78 Total: 0.00 -8.81 383.53 -12.94 -21.75 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -6.13 Total: -11.00 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -6.86 Total: -6.50 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -0.29 Total: -0.14 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.37 Total: -3.84 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.07 Total: -6.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -8.81 -12.94 -21.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.543 kcal (2) G-P(sol) polarization free energy of solvation -8.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds