Wall clock time and date at job start Sun Mar 7 2021 08:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86294 * 109.47404 * 2 1 4 4 C 1.50700 * 109.47105 * 120.00209 * 2 1 3 5 5 C 1.38403 * 119.82969 * 64.99912 * 4 2 1 6 6 C 1.37892 * 120.17260 * 179.97438 * 5 4 2 7 7 C 1.39840 * 119.82135 * 0.02562 * 6 5 4 8 8 C 1.47213 * 120.16558 * 179.97438 * 7 6 5 9 9 C 1.34809 * 119.99724 * 179.97438 * 8 7 6 10 10 C 1.46430 * 119.99383 * 179.97438 * 9 8 7 11 11 O 1.21689 * 120.00725 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99640 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00280 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.90520 * 23.75201 * 13 12 10 15 15 C 1.53785 * 113.61606 * 154.99844 * 13 12 10 16 16 C 1.53774 * 87.07876 * 139.98449 * 15 13 12 17 17 H 1.09002 * 113.61343 * 89.20327 * 16 15 13 18 18 C 1.50702 * 113.61783 * 220.01845 * 16 15 13 19 19 C 1.38234 * 120.00257 * 240.00702 * 18 16 15 20 20 C 1.38238 * 119.99675 * 180.25732 * 19 18 16 21 21 C 1.38228 * 120.00114 * 359.50218 * 20 19 18 22 22 C 1.38234 * 120.00051 * 0.47390 * 21 20 19 23 23 C 1.38235 * 119.99522 * 59.97714 * 18 16 15 24 24 C 1.53770 * 113.61950 * 252.50095 * 13 12 10 25 25 C 1.39834 * 119.66336 * 0.24889 * 7 6 5 26 26 C 1.37887 * 119.82492 * 359.51774 * 25 7 6 27 27 H 0.96692 * 114.00122 * 59.99635 * 1 2 3 28 28 H 1.09002 * 109.46942 * 239.99593 * 2 1 3 29 29 H 1.48499 * 109.99938 * 59.99820 * 3 2 1 30 30 H 1.48496 * 110.00180 * 181.31872 * 3 2 1 31 31 H 1.07997 * 119.91549 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.08795 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99942 * 359.97438 * 8 7 6 34 34 H 1.07993 * 120.00301 * 0.02562 * 9 8 7 35 35 H 0.97002 * 120.00100 * 0.02562 * 12 10 9 36 36 H 1.09000 * 113.61136 * 25.43850 * 15 13 12 37 37 H 1.09002 * 113.61598 * 254.53238 * 15 13 12 38 38 H 1.08002 * 119.99744 * 359.97115 * 19 18 16 39 39 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 40 40 H 1.07999 * 119.99925 * 180.25942 * 21 20 19 41 41 H 1.08001 * 120.00294 * 179.78842 * 22 21 20 42 42 H 1.07996 * 120.00471 * 0.02562 * 23 18 16 43 43 H 1.09001 * 113.61537 * 105.46824 * 24 13 12 44 44 H 1.09000 * 113.61528 * 334.56612 * 24 13 12 45 45 H 1.08006 * 120.08128 * 179.75000 * 25 7 6 46 46 H 1.08002 * 119.91498 * 180.22662 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6824 -2.0619 1.3949 6 6 2.1392 -2.7192 2.5178 7 6 2.8552 -2.0163 3.4919 8 6 3.3459 -2.7103 4.6939 9 6 4.0362 -2.0296 5.6306 10 6 4.5238 -2.7198 6.8264 11 8 4.3063 -3.9079 6.9745 12 7 5.2144 -2.0394 7.7626 13 6 5.7018 -2.7297 8.9594 14 1 5.8212 -3.8030 8.8110 15 6 6.9257 -2.0570 9.6031 16 6 6.2835 -2.3705 10.9647 17 1 6.5630 -3.3450 11.3652 18 6 6.4312 -1.2595 11.9721 19 6 7.0934 -1.4902 13.1634 20 6 7.2243 -0.4725 14.0897 21 6 6.7019 0.7787 13.8203 22 6 6.0401 1.0095 12.6289 23 6 5.9050 -0.0095 11.7046 24 6 4.9283 -2.3669 10.2379 25 6 3.0976 -0.6498 3.3212 26 6 2.6384 -0.0078 2.1906 27 1 -0.3933 0.4417 -0.7649 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5346 1.7702 -0.0321 31 1 1.1289 -2.6032 0.6419 32 1 1.9438 -3.7737 2.6449 33 1 3.1528 -3.7648 4.8252 34 1 4.2289 -0.9751 5.4994 35 1 5.3881 -1.0924 7.6445 36 1 6.9999 -0.9905 9.3906 37 1 7.8599 -2.5906 9.4277 38 1 7.5045 -2.4668 13.3723 39 1 7.7378 -0.6539 15.0223 40 1 6.8078 1.5749 14.5423 41 1 5.6290 1.9861 12.4198 42 1 5.3877 0.1707 10.7739 43 1 4.2499 -3.1507 10.5750 44 1 4.4563 -1.3852 10.1989 45 1 3.6464 -0.0995 4.0712 46 1 2.8280 1.0468 2.0555 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:06 Heat of formation + Delta-G solvation = 32.105026 kcal Electronic energy + Delta-G solvation = -26266.259396 eV Core-core repulsion = 22474.328441 eV Total energy + Delta-G solvation = -3791.930955 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53634 -40.76518 -40.26139 -38.74391 -37.72351 -35.23247 -34.76982 -32.39294 -31.93691 -31.74372 -31.22891 -27.50152 -26.74187 -25.98115 -24.24740 -23.94442 -23.55540 -22.42862 -21.82898 -20.90050 -20.04020 -18.74213 -18.39297 -18.20047 -17.43728 -17.14211 -16.68746 -16.53514 -16.23237 -16.03680 -15.84967 -15.39724 -15.33580 -15.19700 -14.96514 -14.41871 -14.32063 -14.20547 -14.08576 -13.96571 -13.86416 -13.61904 -13.49300 -13.16546 -13.06066 -12.57330 -12.38819 -12.33408 -12.05888 -11.97170 -11.84042 -11.69427 -11.48820 -11.42784 -11.05634 -10.31503 -10.15155 -10.12687 -9.83267 -9.57108 -9.34904 -4.94491 -0.66550 0.22678 0.41419 0.48617 0.77690 1.28948 1.63761 1.95008 2.13595 2.14221 2.66587 2.82102 3.35864 3.42414 3.46827 3.61217 3.67505 3.71013 3.73129 3.88550 3.90350 4.01534 4.05967 4.09936 4.13343 4.17764 4.20137 4.27833 4.30050 4.47791 4.53477 4.60441 4.66538 4.69746 4.70700 4.80017 4.84286 4.93196 4.96237 4.98053 5.04070 5.08762 5.15433 5.20131 5.25711 5.34039 5.46896 5.51963 5.57336 5.63045 5.72233 5.75371 6.10986 6.48584 6.88365 7.15115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.773 3.227 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.081 4.081 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.543 3.457 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.118 3.882 14 H 0.098 0.902 15 C -0.123 4.123 16 C -0.068 4.068 17 H 0.105 0.895 18 C -0.077 4.077 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.144 4.144 27 H 0.404 0.596 28 H 0.095 0.905 29 H -0.295 1.295 30 H -0.287 1.287 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.158 0.842 35 H 0.417 0.583 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.153 0.847 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 5.289 -3.728 6.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.193 4.193 3 Si 0.679 3.321 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.081 4.081 8 C -0.039 4.039 9 C -0.230 4.230 10 C 0.334 3.666 11 O -0.473 6.473 12 N -0.352 5.352 13 C 0.013 3.987 14 H 0.116 0.884 15 C -0.161 4.161 16 C -0.086 4.086 17 H 0.123 0.877 18 C -0.077 4.077 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.180 4.180 25 C -0.115 4.115 26 C -0.162 4.162 27 H 0.255 0.745 28 H 0.113 0.887 29 H -0.223 1.223 30 H -0.215 1.215 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.176 0.824 35 H 0.255 0.745 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.170 0.830 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.313 4.747 -2.657 5.597 hybrid contribution 0.121 -0.256 0.447 0.529 sum 1.434 4.492 -2.210 5.207 Atomic orbital electron populations 1.86441 1.17103 1.82436 1.51435 1.24886 0.85990 1.11195 0.97225 0.94298 0.77415 0.75530 0.84861 1.19933 0.97646 0.94829 0.95738 1.21183 0.98788 0.93746 0.98310 1.21732 0.95771 1.01062 0.92959 1.19129 1.00224 0.93746 0.95050 1.22365 0.91275 0.99756 0.90513 1.23024 1.03594 1.01953 0.94429 1.18705 0.77666 0.86334 0.83910 1.90807 1.59342 1.17401 1.79711 1.45779 1.55139 1.13757 1.20485 1.22495 0.95371 0.97951 0.82874 0.88393 1.23393 0.97204 1.02219 0.93236 1.21309 0.97044 0.97514 0.92783 0.87692 1.19790 0.97989 0.94796 0.95121 1.21323 0.99612 0.99958 0.93926 1.21433 0.99943 0.93477 0.99954 1.21454 0.98565 0.97655 0.97875 1.21436 0.99102 0.99886 0.94253 1.21210 1.00239 0.92668 1.00206 1.23592 0.96532 1.02922 0.94970 1.21562 0.98718 0.93779 0.97421 1.21012 1.00701 0.99314 0.95123 0.74477 0.88675 1.22270 1.21464 0.83981 0.83503 0.85314 0.82438 0.74527 0.88113 0.89905 0.85129 0.84902 0.84935 0.84685 0.84785 0.91705 0.88567 0.82982 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.44 12.81 -148.98 -1.91 -1.47 16 2 C -0.08 0.11 2.79 71.24 0.20 0.31 16 3 Si 0.77 -2.26 29.84 68.60 2.05 -0.21 16 4 C -0.08 -0.32 5.39 -19.79 -0.11 -0.43 16 5 C -0.10 -0.32 9.66 22.23 0.21 -0.11 16 6 C -0.10 -0.26 9.80 22.58 0.22 -0.04 16 7 C -0.08 -0.25 5.87 -20.15 -0.12 -0.37 16 8 C -0.02 -0.06 9.46 23.84 0.23 0.16 16 9 C -0.21 -0.20 9.41 23.62 0.22 0.02 16 10 C 0.54 3.00 7.74 86.38 0.67 3.67 16 11 O -0.59 -8.63 15.83 -4.31 -0.07 -8.70 16 12 N -0.70 0.50 5.35 -444.27 -2.38 -1.87 16 13 C 0.12 0.03 4.24 45.52 0.19 0.22 16 14 H 0.10 0.47 7.46 -2.38 -0.02 0.45 16 15 C -0.12 0.41 7.30 31.12 0.23 0.64 16 16 C -0.07 0.10 3.98 -11.02 -0.04 0.06 16 17 H 0.10 -0.21 8.09 -2.39 -0.02 -0.23 16 18 C -0.08 -0.06 5.29 -19.87 -0.11 -0.16 16 19 C -0.13 -0.20 9.71 22.27 0.22 0.01 16 20 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 21 C -0.14 -0.17 10.05 22.27 0.22 0.06 16 22 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 23 C -0.13 -0.01 8.61 22.27 0.19 0.19 16 24 C -0.14 0.06 7.25 31.12 0.23 0.28 16 25 C -0.10 -0.20 9.41 22.57 0.21 0.01 16 26 C -0.14 -0.58 8.65 22.23 0.19 -0.39 16 27 H 0.40 -4.57 8.74 -74.06 -0.65 -5.22 16 28 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 29 H -0.29 -1.27 7.04 99.48 0.70 -0.57 16 30 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 31 H 0.14 0.04 8.06 -2.91 -0.02 0.01 16 32 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 33 H 0.13 0.64 7.52 -2.91 -0.02 0.62 16 34 H 0.16 -0.89 6.07 -2.91 -0.02 -0.90 16 35 H 0.42 -2.99 8.71 -92.71 -0.81 -3.79 16 36 H 0.10 -0.54 7.70 -2.39 -0.02 -0.56 16 37 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.13 -0.16 8.05 -2.91 -0.02 -0.18 16 39 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 40 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 41 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 42 H 0.13 -0.49 6.66 -2.91 -0.02 -0.51 16 43 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.10 -0.17 6.31 -2.39 -0.02 -0.19 16 45 H 0.15 -0.53 6.17 -2.91 -0.02 -0.55 16 46 H 0.12 0.36 4.84 -2.91 -0.01 0.34 16 Total: 0.00 -21.84 383.53 0.79 -21.05 By element: Atomic # 1 Polarization: -12.69 SS G_CDS: -0.41 Total: -13.10 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 3.51 Total: 4.30 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -2.38 Total: -1.87 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.98 Total: -10.17 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.05 Total: -0.21 kcal Total: -21.84 0.79 -21.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.157 kcal (2) G-P(sol) polarization free energy of solvation -21.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds