Wall clock time and date at job start Sun Mar 7 2021 08:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47275 * 2 1 4 4 C 1.50700 * 109.46758 * 120.00219 * 2 1 3 5 5 C 1.38183 * 119.84403 * 15.00055 * 4 2 1 6 6 C 1.38318 * 120.14004 * 179.97438 * 5 4 2 7 7 F 1.35106 * 120.07657 * 179.97438 * 6 5 4 8 8 C 1.39798 * 119.83634 * 359.97438 * 6 5 4 9 9 C 1.47696 * 120.15478 * 180.02562 * 8 6 5 10 10 O 1.21565 * 120.00202 * 359.97438 * 9 8 6 11 11 N 1.34783 * 120.00179 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00175 * 179.97438 * 11 9 8 13 13 H 1.08999 * 112.85152 * 23.80502 * 12 11 9 14 14 C 1.53785 * 113.61408 * 154.99511 * 12 11 9 15 15 C 1.53781 * 87.07878 * 139.98321 * 14 12 11 16 16 H 1.08996 * 113.61423 * 89.20757 * 15 14 12 17 17 C 1.50706 * 113.61083 * 220.01993 * 15 14 12 18 18 C 1.38229 * 120.00050 * 59.73246 * 17 15 14 19 19 C 1.38239 * 120.00049 * 179.76556 * 18 17 15 20 20 C 1.38233 * 119.99922 * 0.50241 * 19 18 17 21 21 C 1.38237 * 119.99498 * 359.74888 * 20 19 18 22 22 C 1.38225 * 120.00402 * 359.97438 * 21 20 19 23 23 C 1.53775 * 87.08212 * 334.56829 * 15 14 12 24 24 C 1.39655 * 119.69248 * 0.27261 * 8 6 5 25 25 C 1.38072 * 119.84519 * 359.47130 * 24 8 6 26 26 F 1.35100 * 119.91507 * 180.27473 * 25 24 8 27 27 H 0.96699 * 114.00543 * 299.99859 * 1 2 3 28 28 H 1.08998 * 109.47268 * 240.00109 * 2 1 3 29 29 H 1.48495 * 110.00169 * 178.67883 * 3 2 1 30 30 H 1.48495 * 110.00032 * 300.00168 * 3 2 1 31 31 H 1.07995 * 119.93059 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99478 * 359.97438 * 11 9 8 33 33 H 1.09003 * 113.61224 * 25.43633 * 14 12 11 34 34 H 1.08996 * 113.61709 * 254.53628 * 14 12 11 35 35 H 1.08008 * 120.00421 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.00142 * 180.23042 * 19 18 17 37 37 H 1.07993 * 120.00292 * 179.72767 * 20 19 18 38 38 H 1.08005 * 119.99496 * 179.97438 * 21 20 19 39 39 H 1.08010 * 120.00198 * 179.97438 * 22 21 20 40 40 H 1.09007 * 113.61519 * 139.98052 * 23 15 14 41 41 H 1.08996 * 113.61809 * 270.88411 * 23 15 14 42 42 H 1.07993 * 120.07643 * 179.70281 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 1.0689 -1.4963 1.9709 6 6 1.5235 -2.1515 3.1011 7 9 0.6790 -2.9191 3.8244 8 6 2.8587 -2.0176 3.4929 9 6 3.3517 -2.7146 4.6981 10 8 2.5958 -3.4063 5.3522 11 7 4.6396 -2.5829 5.0733 12 6 5.1285 -3.2738 6.2690 13 1 4.5317 -4.1489 6.5260 14 6 6.6421 -3.5450 6.2482 15 6 6.6492 -3.1751 7.7409 16 1 6.4698 -4.0232 8.4017 17 6 7.8438 -2.3542 8.1536 18 6 8.0754 -1.1258 7.5637 19 6 9.1684 -0.3706 7.9458 20 6 10.0356 -0.8486 8.9103 21 6 9.8069 -2.0795 9.4964 22 6 8.7107 -2.8320 9.1185 23 6 5.3926 -2.3352 7.4582 24 6 3.7230 -1.2176 2.7423 25 6 3.2568 -0.5735 1.6135 26 9 4.0931 0.1963 0.8832 27 1 -0.3934 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7702 0.0322 30 1 1.5615 2.4678 -1.2084 31 1 0.0378 -1.5990 1.6667 32 1 5.2427 -2.0306 4.5516 33 1 7.2018 -2.8490 5.6233 34 1 6.8963 -4.5871 6.0553 35 1 7.4005 -0.7543 6.8067 36 1 9.3473 0.5909 7.4876 37 1 10.8920 -0.2607 9.2057 38 1 10.4847 -2.4532 10.2497 39 1 8.5322 -3.7939 9.5762 40 1 4.6380 -2.4007 8.2421 41 1 5.6106 -1.3086 7.1640 42 1 4.7544 -1.1059 3.0421 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:09 Heat of formation + Delta-G solvation = -57.308292 kcal Electronic energy + Delta-G solvation = -29131.463538 eV Core-core repulsion = 24680.511139 eV Total energy + Delta-G solvation = -4450.952399 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.43214 -50.08157 -41.68637 -40.76996 -39.86953 -38.68588 -37.64297 -35.00449 -33.03628 -31.82022 -31.55026 -31.38892 -28.10287 -26.70944 -26.02243 -24.19504 -23.92224 -23.52604 -22.42203 -21.76381 -20.56820 -19.42285 -19.09206 -18.55426 -18.13207 -17.76185 -17.51625 -17.24322 -16.82644 -16.70367 -16.42772 -16.04607 -15.96971 -15.89108 -15.73547 -15.64007 -15.28820 -15.13029 -14.56753 -14.29408 -14.18719 -14.16302 -13.92461 -13.70229 -13.45632 -13.28525 -13.15075 -12.94120 -12.55324 -12.50226 -12.29440 -11.82569 -11.69707 -11.53282 -11.45137 -11.08064 -10.99456 -10.27371 -10.14013 -9.79968 -9.70999 -9.53560 -4.99381 -0.77152 -0.27027 0.44630 0.51991 1.14868 1.47949 1.65865 1.89017 1.99226 2.29448 2.81057 2.85124 2.85365 3.14526 3.20596 3.43349 3.52258 3.55120 3.68613 3.72468 3.83212 3.93495 4.06334 4.14925 4.18931 4.21561 4.30905 4.34108 4.40642 4.54604 4.63356 4.63639 4.71744 4.73922 4.75318 4.79937 4.83821 4.96488 5.02276 5.09311 5.17048 5.21083 5.41611 5.49002 5.60507 5.66400 5.75105 6.14271 6.33610 6.63968 7.00897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.072 4.072 3 Si 0.764 3.236 4 C -0.084 4.084 5 C -0.116 4.116 6 C 0.139 3.861 7 F -0.128 7.128 8 C -0.158 4.158 9 C 0.558 3.442 10 O -0.564 6.564 11 N -0.697 5.697 12 C 0.119 3.881 13 H 0.101 0.899 14 C -0.123 4.123 15 C -0.068 4.068 16 H 0.104 0.896 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.069 4.069 25 C 0.072 3.928 26 F -0.121 7.121 27 H 0.400 0.600 28 H 0.128 0.872 29 H -0.252 1.252 30 H -0.304 1.304 31 H 0.174 0.826 32 H 0.416 0.584 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 3.998 0.002 5.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.181 4.181 3 Si 0.667 3.333 4 C -0.085 4.085 5 C -0.135 4.135 6 C 0.118 3.882 7 F -0.106 7.106 8 C -0.163 4.163 9 C 0.345 3.655 10 O -0.444 6.444 11 N -0.348 5.348 12 C 0.014 3.986 13 H 0.119 0.881 14 C -0.161 4.161 15 C -0.087 4.087 16 H 0.122 0.878 17 C -0.077 4.077 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.179 4.179 24 C -0.088 4.088 25 C 0.052 3.948 26 F -0.100 7.100 27 H 0.251 0.749 28 H 0.145 0.855 29 H -0.178 1.178 30 H -0.232 1.232 31 H 0.192 0.808 32 H 0.255 0.745 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.671 3.765 -0.478 5.281 hybrid contribution 0.240 -0.603 -0.262 0.700 sum 3.911 3.163 -0.740 5.084 Atomic orbital electron populations 1.86500 1.16280 1.81839 1.50958 1.25188 0.86053 1.10702 0.96178 0.94267 0.79073 0.73832 0.86113 1.20471 0.92103 0.97705 0.98244 1.20881 1.03065 0.96709 0.92809 1.17969 0.86964 0.92016 0.91216 1.91596 1.69874 1.72568 1.76545 1.19809 0.93538 1.04043 0.98863 1.18147 0.82955 0.80511 0.83838 1.90863 1.56729 1.41044 1.55735 1.45761 1.09747 1.50419 1.28903 1.22570 0.95290 0.96241 0.84455 0.88133 1.23420 0.93581 1.03603 0.95511 1.21298 0.92097 0.98166 0.97099 0.87757 1.19790 0.96118 0.95238 0.96521 1.21227 0.98054 0.94314 1.00573 1.21444 0.94979 1.00548 0.97672 1.21453 1.00237 0.96577 0.97398 1.21420 0.98012 0.95194 1.00308 1.21317 0.95119 1.00532 0.97912 1.23601 0.96888 0.99649 0.97745 1.21282 1.01472 0.93781 0.92247 1.17299 0.87966 0.96511 0.92990 1.91603 1.70942 1.71720 1.75713 0.74882 0.85522 1.17767 1.23191 0.80826 0.74534 0.87850 0.89859 0.84414 0.84610 0.85083 0.85103 0.85241 0.91513 0.88194 0.80197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.39 11.63 -148.98 -1.73 0.65 16 2 C -0.07 0.31 2.96 71.24 0.21 0.53 16 3 Si 0.76 -3.35 30.81 68.60 2.11 -1.24 16 4 C -0.08 0.33 5.14 -19.78 -0.10 0.23 16 5 C -0.12 0.29 9.20 22.28 0.20 0.49 16 6 C 0.14 0.38 7.28 22.67 0.17 0.54 16 7 F -0.13 -1.19 15.55 44.97 0.70 -0.49 16 8 C -0.16 -0.06 5.88 -20.06 -0.12 -0.18 16 9 C 0.56 2.28 7.77 86.74 0.67 2.96 16 10 O -0.56 -7.71 14.94 -3.92 -0.06 -7.77 16 11 N -0.70 2.24 5.31 -443.06 -2.35 -0.11 16 12 C 0.12 -0.27 4.24 45.52 0.19 -0.07 16 13 H 0.10 0.24 7.46 -2.39 -0.02 0.22 16 14 C -0.12 0.69 7.30 31.12 0.23 0.92 16 15 C -0.07 0.24 3.98 -11.01 -0.04 0.20 16 16 H 0.10 -0.39 8.09 -2.39 -0.02 -0.41 16 17 C -0.08 0.08 5.29 -19.87 -0.11 -0.03 16 18 C -0.12 0.25 8.60 22.27 0.19 0.44 16 19 C -0.13 0.13 10.05 22.27 0.22 0.35 16 20 C -0.14 -0.02 10.05 22.27 0.22 0.20 16 21 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 22 C -0.13 -0.05 9.71 22.27 0.22 0.17 16 23 C -0.14 0.42 7.25 31.12 0.23 0.64 16 24 C -0.07 0.38 9.52 22.57 0.21 0.59 16 25 C 0.07 -0.28 6.65 22.33 0.15 -0.13 16 26 F -0.12 0.23 12.81 44.97 0.58 0.81 16 27 H 0.40 -5.08 8.42 -74.06 -0.62 -5.70 16 28 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 29 H -0.25 0.05 5.27 99.48 0.52 0.57 16 30 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 31 H 0.17 -0.89 7.06 -2.91 -0.02 -0.91 16 32 H 0.42 -4.20 6.76 -92.71 -0.63 -4.83 16 33 H 0.10 -0.84 7.69 -2.39 -0.02 -0.86 16 34 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.14 -0.89 6.68 -2.91 -0.02 -0.91 16 36 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 37 H 0.13 -0.37 8.06 -2.91 -0.02 -0.40 16 38 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 41 H 0.10 -0.49 6.32 -2.39 -0.02 -0.51 16 42 H 0.18 -2.23 6.40 -2.91 -0.02 -2.25 16 Total: 0.00 -20.71 355.67 1.92 -18.79 By element: Atomic # 1 Polarization: -18.35 SS G_CDS: -0.30 Total: -18.65 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 2.97 Total: 8.00 kcal Atomic # 7 Polarization: 2.24 SS G_CDS: -2.35 Total: -0.11 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -1.79 Total: -7.11 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 1.27 Total: 0.32 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.11 Total: -1.24 kcal Total: -20.71 1.92 -18.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.516 kcal (2) G-P(sol) polarization free energy of solvation -20.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds