Wall clock time and date at job start Sun Mar 7 2021 08:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35658 * 117.00252 * 2 1 4 4 C 1.40136 * 120.14842 * 179.97438 * 3 2 1 5 5 C 1.47538 * 120.19593 * 0.02562 * 4 3 2 6 6 O 1.21589 * 119.99883 * 359.71581 * 5 4 3 7 7 N 1.34772 * 119.99969 * 179.72009 * 5 4 3 8 8 C 1.46501 * 119.99562 * 179.97438 * 7 5 4 9 9 H 1.08993 * 112.91106 * 336.25454 * 8 7 5 10 10 C 1.53781 * 113.61200 * 107.50294 * 8 7 5 11 11 C 1.53782 * 87.08140 * 139.98143 * 10 8 7 12 12 H 1.08996 * 113.69687 * 89.12711 * 11 10 8 13 13 C 1.50706 * 113.61489 * 220.02314 * 11 10 8 14 14 C 1.38237 * 119.99761 * 217.49893 * 13 11 10 15 15 C 1.38235 * 119.99712 * 179.97438 * 14 13 11 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00191 * 37.46995 * 13 11 10 19 19 C 1.53782 * 87.08223 * 334.56608 * 11 10 8 20 20 C 1.39709 * 119.61359 * 179.72066 * 4 3 2 21 21 C 1.37784 * 119.90794 * 0.25205 * 20 4 3 22 22 C 1.50703 * 119.84960 * 179.97438 * 21 20 4 23 23 O 1.42899 * 109.46934 * 300.00485 * 22 21 20 24 24 Si 1.86298 * 109.47166 * 180.02562 * 22 21 20 25 25 C 1.38547 * 120.30241 * 0.02619 * 21 20 4 26 26 C 1.38053 * 120.38636 * 359.97422 * 25 21 20 27 27 H 1.09006 * 109.46694 * 60.00534 * 1 2 3 28 28 H 1.08998 * 109.47773 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47817 * 300.00478 * 1 2 3 30 30 H 0.96988 * 120.00317 * 359.97438 * 7 5 4 31 31 H 1.09001 * 113.61431 * 25.43362 * 10 8 7 32 32 H 1.08998 * 113.61748 * 254.52456 * 10 8 7 33 33 H 1.08005 * 120.00088 * 359.96779 * 14 13 11 34 34 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 35 35 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 36 36 H 1.07998 * 120.00391 * 179.72199 * 17 16 15 37 37 H 1.07999 * 119.99990 * 0.02562 * 18 13 11 38 38 H 1.08993 * 113.61640 * 139.97737 * 19 11 10 39 39 H 1.08999 * 113.61651 * 270.80348 * 19 11 10 40 40 H 1.08003 * 120.04497 * 180.23365 * 20 4 3 41 41 H 1.08999 * 109.47226 * 60.00316 * 22 21 20 42 42 H 0.96706 * 113.99892 * 179.97438 * 23 22 21 43 43 H 1.48506 * 109.99628 * 298.67870 * 24 22 21 44 44 H 1.48498 * 110.00267 * 59.99845 * 24 22 21 45 45 H 1.08003 * 119.80279 * 179.97438 * 25 21 20 46 46 H 1.08005 * 119.95275 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2856 0.0005 5 6 4.2550 0.0531 0.0005 6 8 3.7095 -1.0336 0.0053 7 7 5.6004 0.1316 -0.0046 8 6 6.4056 -1.0923 -0.0041 9 1 5.8725 -1.9507 0.4046 10 6 7.0932 -1.3779 -1.3496 11 6 8.3217 -1.8218 -0.5381 12 1 8.3139 -2.8795 -0.2748 13 6 9.6322 -1.3769 -1.1346 14 6 10.7333 -2.2113 -1.0841 15 6 11.9352 -1.8034 -1.6317 16 6 12.0358 -0.5618 -2.2309 17 6 10.9361 0.2745 -2.2772 18 6 9.7331 -0.1349 -1.7329 19 6 7.8132 -0.9034 0.5857 20 6 4.0668 2.5362 -0.0054 21 6 3.3038 3.6836 -0.0065 22 6 3.9769 5.0319 -0.0123 23 8 4.7958 5.1605 1.1517 24 14 2.6827 6.3720 -0.0116 25 6 1.9207 3.6033 -0.0011 26 6 1.2925 2.3740 0.0048 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 6.0356 0.9984 -0.0087 31 1 7.2660 -0.4846 -1.9499 32 1 6.6283 -2.1856 -1.9148 33 1 10.6544 -3.1817 -0.6166 34 1 12.7955 -2.4551 -1.5918 35 1 12.9748 -0.2434 -2.6591 36 1 11.0158 1.2464 -2.7413 37 1 8.8729 0.5169 -1.7725 38 1 7.9294 -1.3280 1.5828 39 1 8.1839 0.1192 0.5153 40 1 5.1447 2.6036 -0.0088 41 1 4.5962 5.1250 -0.9043 42 1 5.2610 6.0060 1.2139 43 1 1.8441 6.2688 -1.2329 44 1 1.8319 6.2559 1.2000 45 1 1.3305 4.5078 -0.0016 46 1 0.2139 2.3196 0.0093 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:12 Heat of formation + Delta-G solvation = -13.543630 kcal Electronic energy + Delta-G solvation = -28734.124056 eV Core-core repulsion = 24749.757575 eV Total energy + Delta-G solvation = -3984.366480 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96212 -41.19446 -39.99104 -39.18842 -38.60294 -37.18135 -34.87898 -32.86042 -32.05964 -31.79893 -31.43278 -28.65880 -26.72300 -26.49257 -26.14722 -24.95269 -23.58713 -22.95496 -22.00472 -21.55900 -20.39683 -19.49331 -18.49799 -18.20495 -18.13743 -17.62377 -16.95507 -16.90312 -16.46674 -16.23099 -16.10491 -15.93776 -15.72448 -15.48529 -15.28052 -14.92581 -14.62378 -14.30321 -14.19818 -14.12418 -13.92021 -13.91643 -13.63550 -13.46605 -13.11193 -13.00511 -12.57574 -12.50740 -12.39818 -12.26517 -12.19000 -11.93266 -11.80475 -11.65512 -11.45776 -10.96434 -10.40682 -10.28402 -10.06031 -9.79801 -9.53814 -9.38773 -4.92205 -0.43190 0.08104 0.44695 0.52100 1.32376 1.62851 1.68417 1.97827 2.05273 2.14790 2.54291 2.85339 3.30588 3.40744 3.44560 3.54305 3.67680 3.72102 3.75217 3.92060 3.92866 4.03143 4.07136 4.15735 4.18018 4.19612 4.23825 4.26638 4.31170 4.46206 4.54434 4.57302 4.61144 4.63765 4.69427 4.72942 4.79400 4.82576 4.91379 4.97207 5.00486 5.11193 5.13510 5.18355 5.22503 5.40400 5.52547 5.60599 5.66271 5.75470 6.14323 6.16887 6.46782 6.95598 7.15442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.308 6.308 3 C 0.171 3.829 4 C -0.192 4.192 5 C 0.559 3.441 6 O -0.563 6.563 7 N -0.703 5.703 8 C 0.119 3.881 9 H 0.097 0.903 10 C -0.141 4.141 11 C -0.066 4.066 12 H 0.105 0.895 13 C -0.077 4.077 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.138 4.138 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.011 4.011 21 C -0.134 4.134 22 C -0.069 4.069 23 O -0.562 6.562 24 Si 0.766 3.234 25 C -0.065 4.065 26 C -0.213 4.213 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.412 0.588 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.162 0.838 41 H 0.103 0.897 42 H 0.405 0.595 43 H -0.287 1.287 44 H -0.298 1.298 45 H 0.130 0.870 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 7.496 -1.137 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.220 6.220 3 C 0.122 3.878 4 C -0.196 4.196 5 C 0.348 3.652 6 O -0.442 6.442 7 N -0.356 5.356 8 C 0.015 3.985 9 H 0.115 0.885 10 C -0.179 4.179 11 C -0.085 4.085 12 H 0.123 0.877 13 C -0.077 4.077 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.029 4.029 21 C -0.135 4.135 22 C -0.179 4.179 23 O -0.373 6.373 24 Si 0.672 3.328 25 C -0.083 4.083 26 C -0.232 4.232 27 H 0.090 0.910 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.251 0.749 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.179 0.821 41 H 0.120 0.880 42 H 0.256 0.744 43 H -0.214 1.214 44 H -0.226 1.226 45 H 0.148 0.852 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.602 6.104 -1.019 6.392 hybrid contribution -0.263 -0.365 -0.098 0.461 sum 1.339 5.739 -1.118 5.998 Atomic orbital electron populations 1.23456 0.76563 1.05703 1.02618 1.86339 1.23154 1.25947 1.86547 1.19344 0.91518 0.85297 0.91637 1.19525 0.91042 0.94405 1.14649 1.18208 0.82911 0.88295 0.75826 1.90805 1.72532 1.30159 1.50703 1.45768 1.04810 1.10360 1.74619 1.22520 0.90338 0.87986 0.97700 0.88478 1.23595 0.95275 1.02297 0.96743 1.21288 0.90413 1.00347 0.96412 0.87720 1.19781 0.94793 0.94658 0.98480 1.21315 0.92960 1.00250 1.00328 1.21427 0.98200 0.96982 0.98250 1.21461 0.99579 0.94639 0.99867 1.21440 0.93024 1.00466 0.99610 1.21215 0.98299 0.96169 0.98563 1.23403 0.92594 1.01276 0.98774 1.21168 1.01088 0.88742 0.91947 1.19541 0.92866 0.95548 1.05501 1.24652 1.02472 0.98672 0.92077 1.86438 1.64507 1.44022 1.42299 0.94329 0.77494 0.84686 0.76262 1.21082 0.94462 0.97311 0.95471 1.21364 1.01642 0.90968 1.09186 0.91017 0.86888 0.91204 0.74945 0.88453 0.91712 0.85224 0.84958 0.84891 0.84507 0.84731 0.89916 0.88003 0.82086 0.87951 0.74361 1.21441 1.22603 0.85229 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 -3.53 8.57 -68.82 -0.59 -4.12 16 3 C 0.17 1.58 6.70 22.84 0.15 1.74 16 4 C -0.19 -1.56 5.89 -20.01 -0.12 -1.68 16 5 C 0.56 5.87 7.76 86.70 0.67 6.54 16 6 O -0.56 -10.71 14.76 16.92 0.25 -10.46 16 7 N -0.70 -1.76 5.30 -443.20 -2.35 -4.11 16 8 C 0.12 0.25 4.24 45.52 0.19 0.44 16 9 H 0.10 0.66 7.46 -2.39 -0.02 0.64 16 10 C -0.14 -0.08 7.25 31.12 0.23 0.14 16 11 C -0.07 0.06 3.98 -11.01 -0.04 0.01 16 12 H 0.10 -0.14 8.09 -2.39 -0.02 -0.16 16 13 C -0.08 -0.08 5.29 -19.86 -0.11 -0.18 16 14 C -0.13 -0.22 9.71 22.27 0.22 -0.01 16 15 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 16 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 17 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 18 C -0.12 0.01 8.61 22.27 0.19 0.20 16 19 C -0.12 0.27 7.30 31.12 0.23 0.50 16 20 C -0.01 -0.03 9.08 22.52 0.20 0.18 16 21 C -0.13 -0.29 5.42 -19.90 -0.11 -0.40 16 22 C -0.07 0.29 2.81 71.24 0.20 0.49 16 23 O -0.56 2.45 12.74 -148.98 -1.90 0.55 16 24 Si 0.77 -3.50 29.77 68.60 2.04 -1.46 16 25 C -0.07 -0.24 8.66 22.30 0.19 -0.05 16 26 C -0.21 -0.98 9.03 22.34 0.20 -0.78 16 27 H 0.07 -0.12 7.67 -2.38 -0.02 -0.14 16 28 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.07 -0.09 7.65 -2.39 -0.02 -0.11 16 30 H 0.41 -1.51 6.76 -92.72 -0.63 -2.14 16 31 H 0.10 -0.11 6.31 -2.39 -0.02 -0.12 16 32 H 0.06 0.20 8.14 -2.39 -0.02 0.19 16 33 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 36 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 37 H 0.13 -0.51 6.66 -2.91 -0.02 -0.53 16 38 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.10 -0.46 7.70 -2.39 -0.02 -0.48 16 40 H 0.16 -0.63 6.40 -2.91 -0.02 -0.64 16 41 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 42 H 0.40 -5.89 8.74 -74.05 -0.65 -6.54 16 43 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 44 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 45 H 0.13 0.23 4.85 -2.91 -0.01 0.22 16 46 H 0.16 -0.05 6.30 -2.91 -0.02 -0.07 16 Total: 0.00 -24.53 376.25 1.33 -23.19 By element: Atomic # 1 Polarization: -11.98 SS G_CDS: -0.21 Total: -12.19 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.09 Total: 8.58 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -2.35 Total: -4.11 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -2.24 Total: -14.02 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.04 Total: -1.46 kcal Total: -24.53 1.33 -23.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.651 kcal (2) G-P(sol) polarization free energy of solvation -24.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds