Wall clock time and date at job start Sun Mar 7 2021 08:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.35093 * 126.07074 * 255.02023 * 4 2 1 6 6 N 1.35042 * 107.97542 * 180.02562 * 5 4 2 7 7 C 1.46502 * 125.92720 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46717 * 125.00017 * 7 6 5 9 9 O 1.21280 * 120.00333 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00334 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.84438 * 25.33586 * 11 10 8 13 13 C 1.53780 * 113.61693 * 156.53311 * 11 10 8 14 14 C 1.53784 * 87.07937 * 139.98159 * 13 11 10 15 15 H 1.09002 * 113.61300 * 89.11671 * 14 13 11 16 16 C 1.50697 * 113.61419 * 219.93094 * 14 13 11 17 17 C 1.38236 * 119.99547 * 59.73086 * 16 14 13 18 18 C 1.38236 * 119.99721 * 179.78895 * 17 16 14 19 19 C 1.38239 * 120.00224 * 0.45997 * 18 17 16 20 20 C 1.38239 * 119.99691 * 359.77343 * 19 18 17 21 21 C 1.38230 * 120.00541 * 240.00518 * 16 14 13 22 22 C 1.53784 * 113.61455 * 254.14647 * 11 10 8 23 23 N 1.40072 * 108.13750 * 0.02562 * 6 5 4 24 24 C 1.31617 * 108.11010 * 359.71427 * 23 6 5 25 25 C 1.48421 * 126.03689 * 180.29476 * 24 23 6 26 26 C 1.39325 * 120.11971 * 144.89694 * 25 24 23 27 27 C 1.38017 * 119.88022 * 179.74737 * 26 25 24 28 28 C 1.38319 * 120.12136 * 0.54862 * 27 26 25 29 29 C 1.38319 * 120.23823 * 359.70071 * 28 27 26 30 30 C 1.38028 * 120.12209 * 0.02562 * 29 28 27 31 31 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 32 32 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 33 33 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 34 34 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 35 35 H 1.07996 * 126.01192 * 359.96679 * 5 4 2 36 36 H 1.09004 * 109.46871 * 244.99646 * 7 6 5 37 37 H 1.08997 * 109.47223 * 4.99941 * 7 6 5 38 38 H 0.97008 * 119.99681 * 0.02562 * 10 8 7 39 39 H 1.09004 * 113.61033 * 254.53302 * 13 11 10 40 40 H 1.08999 * 113.61048 * 25.43355 * 13 11 10 41 41 H 1.07999 * 120.00294 * 359.97438 * 17 16 14 42 42 H 1.08005 * 119.99976 * 180.25472 * 18 17 16 43 43 H 1.07992 * 120.00224 * 179.78916 * 19 18 17 44 44 H 1.07998 * 119.99984 * 180.02562 * 20 19 18 45 45 H 1.08005 * 119.99738 * 359.97438 * 21 16 14 46 46 H 1.08998 * 113.61279 * 334.55676 * 22 11 10 47 47 H 1.08997 * 113.61555 * 105.46687 * 22 11 10 48 48 H 1.08007 * 120.05541 * 359.97438 * 26 25 24 49 49 H 1.07999 * 119.94277 * 180.27278 * 27 26 25 50 50 H 1.07997 * 119.88313 * 179.72464 * 28 27 26 51 51 H 1.08001 * 119.94512 * 180.02562 * 29 28 27 52 52 H 1.08000 * 120.06074 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 2.4626 -0.1251 2.3258 6 7 2.7887 -1.0993 3.2022 7 6 3.3934 -0.9012 4.5219 8 6 2.5399 -1.5670 5.5704 9 8 1.5267 -2.1499 5.2472 10 7 2.9031 -1.5154 6.8673 11 6 2.0732 -2.1621 7.8867 12 1 1.4780 -2.9840 7.4889 13 6 2.8417 -2.5223 9.1691 14 6 1.5972 -2.0661 9.9490 15 1 0.8707 -2.8614 10.1159 16 6 1.9197 -1.2956 11.2033 17 6 2.6430 -0.1201 11.1255 18 6 2.9351 0.5890 12.2756 19 6 2.5121 0.1178 13.5044 20 6 1.7929 -1.0602 13.5826 21 6 1.4972 -1.7670 12.4321 22 6 1.2635 -1.1722 8.7408 23 7 2.4486 -2.3320 2.6305 24 6 1.9261 -2.1026 1.4444 25 6 1.4231 -3.1296 0.4984 26 6 0.3156 -2.8597 -0.3027 27 6 -0.1448 -3.8164 -1.1844 28 6 0.4842 -5.0457 -1.2656 29 6 1.5809 -5.3209 -0.4689 30 6 2.0532 -4.3693 0.4124 31 1 -0.3934 0.4418 -0.7650 32 1 1.7923 -0.5137 -0.8901 33 1 1.5616 2.4678 1.2086 34 1 3.5346 1.7703 -0.0322 35 1 2.6027 0.9354 2.4741 36 1 4.3913 -1.3395 4.5337 37 1 3.4625 0.1658 4.7334 38 1 3.7138 -1.0495 7.1257 39 1 3.0525 -3.5872 9.2673 40 1 3.7185 -1.8984 9.3424 41 1 2.9774 0.2458 10.1660 42 1 3.4967 1.5096 12.2145 43 1 2.7432 0.6700 14.4032 44 1 1.4620 -1.4282 14.5426 45 1 0.9355 -2.6875 12.4932 46 1 1.7082 -0.1786 8.7968 47 1 0.2022 -1.1488 8.4936 48 1 -0.1794 -1.9020 -0.2364 49 1 -1.0005 -3.6066 -1.8090 50 1 0.1179 -5.7931 -1.9537 51 1 2.0686 -6.2821 -0.5364 52 1 2.9098 -4.5851 1.0336 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:17 Heat of formation + Delta-G solvation = 103.962639 kcal Electronic energy + Delta-G solvation = -34447.454682 eV Core-core repulsion = 29960.260366 eV Total energy + Delta-G solvation = -4487.194316 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.173 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.62369 -41.52717 -40.39296 -39.77447 -38.74816 -37.69161 -35.04959 -34.73585 -32.50824 -32.03504 -31.83922 -31.68188 -31.41081 -28.95872 -26.79427 -26.31522 -25.66361 -24.21955 -23.61120 -23.49141 -22.58065 -21.84063 -21.62904 -20.94960 -20.37267 -18.62238 -18.45710 -18.25409 -18.15989 -17.56723 -16.94662 -16.73709 -16.52360 -16.31958 -16.02929 -15.89448 -15.76797 -15.39059 -15.34930 -15.16439 -14.95085 -14.60420 -14.40812 -14.37084 -14.25908 -14.16813 -14.00654 -13.81311 -13.68692 -13.53072 -13.43457 -13.11657 -12.74596 -12.61642 -12.36929 -12.27698 -12.15786 -11.88420 -11.85816 -11.73741 -11.62781 -11.54388 -11.30912 -10.74684 -10.20961 -10.15652 -9.90187 -9.84561 -9.83949 -9.58793 -9.36028 -4.90251 0.03530 0.39773 0.47364 0.48298 0.62353 1.17650 1.35125 1.38284 1.57815 1.77118 1.98930 2.01674 2.80330 2.88370 3.23555 3.36748 3.44115 3.47200 3.59663 3.66019 3.76306 3.78008 3.86441 3.97994 4.00092 4.01916 4.05252 4.09832 4.13718 4.14177 4.26385 4.26669 4.34828 4.48130 4.49496 4.58545 4.60534 4.62520 4.66520 4.74522 4.76510 4.80253 4.89287 4.93641 4.97496 5.04794 5.12489 5.16087 5.17733 5.25601 5.43506 5.55827 5.56327 5.61820 5.62000 5.62316 5.69442 5.73414 6.06706 6.09539 6.36335 6.45363 7.01075 7.05960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.047 4.047 3 Si 0.791 3.209 4 C -0.228 4.228 5 C 0.056 3.944 6 N -0.360 5.360 7 C 0.107 3.893 8 C 0.497 3.503 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.121 3.879 12 H 0.088 0.912 13 C -0.119 4.119 14 C -0.068 4.068 15 H 0.100 0.900 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.139 4.139 23 N -0.290 5.290 24 C 0.112 3.888 25 C -0.042 4.042 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.114 4.114 29 C -0.132 4.132 30 C -0.112 4.112 31 H 0.401 0.599 32 H 0.077 0.923 33 H -0.284 1.284 34 H -0.288 1.288 35 H 0.199 0.801 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.422 0.578 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.159 0.841 49 H 0.151 0.849 50 H 0.148 0.852 51 H 0.141 0.859 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 6.182 -0.960 7.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.156 4.156 3 Si 0.694 3.306 4 C -0.239 4.239 5 C -0.089 4.089 6 N -0.142 5.142 7 C -0.016 4.016 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.353 5.353 11 C 0.016 3.984 12 H 0.106 0.894 13 C -0.157 4.157 14 C -0.087 4.087 15 H 0.118 0.882 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.178 4.178 23 N -0.111 5.111 24 C -0.053 4.053 25 C -0.044 4.044 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.133 4.133 29 C -0.149 4.149 30 C -0.131 4.131 31 H 0.253 0.747 32 H 0.094 0.906 33 H -0.211 1.211 34 H -0.215 1.215 35 H 0.215 0.785 36 H 0.163 0.837 37 H 0.189 0.811 38 H 0.260 0.740 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.120 0.880 47 H 0.077 0.923 48 H 0.176 0.824 49 H 0.169 0.831 50 H 0.166 0.834 51 H 0.159 0.841 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.209 5.197 0.816 6.737 hybrid contribution 0.096 -0.143 0.329 0.371 sum 4.305 5.054 1.145 6.737 Atomic orbital electron populations 1.86407 1.17892 1.81443 1.51365 1.24248 0.85253 1.11218 0.94876 0.93966 0.77341 0.73804 0.85509 1.19897 1.12485 0.92113 0.99402 1.22595 1.00306 0.95987 0.90055 1.48113 1.48369 1.03512 1.14198 1.22013 0.97237 1.06126 0.76239 1.21030 0.85929 0.80345 0.84498 1.90825 1.27751 1.44032 1.81669 1.45743 1.28452 1.56177 1.04915 1.22427 0.93619 0.96048 0.86315 0.89413 1.23383 0.97358 1.03012 0.91988 1.21313 0.98766 0.97980 0.90671 0.88224 1.19759 0.98096 0.95679 0.94183 1.21213 0.98823 0.94832 0.99242 1.21452 1.00005 1.00481 0.92602 1.21466 0.98602 0.96764 0.98685 1.21423 0.98728 0.95670 0.99020 1.21310 1.00672 1.00553 0.92450 1.23612 1.00576 0.99227 0.94363 1.77664 1.20633 1.03763 1.09088 1.21008 0.98357 0.93592 0.92367 1.18044 0.97654 0.92314 0.96425 1.22102 0.94636 1.01978 0.94223 1.21470 1.00724 0.93326 0.98800 1.21639 0.95154 0.97642 0.98830 1.21341 0.97676 0.99609 0.96315 1.21287 1.00044 0.92957 0.98816 0.74718 0.90552 1.21064 1.21505 0.78479 0.83688 0.81074 0.73998 0.90159 0.87488 0.84425 0.84466 0.84910 0.85018 0.85419 0.87993 0.92251 0.82385 0.83148 0.83395 0.84108 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.61 10.05 -148.98 -1.50 -2.11 16 2 C -0.05 -0.09 2.00 71.23 0.14 0.05 16 3 Si 0.79 -2.60 30.78 68.60 2.11 -0.49 16 4 C -0.23 -2.18 5.37 -19.95 -0.11 -2.29 16 5 C 0.06 0.37 9.96 83.47 0.83 1.20 16 6 N -0.36 -3.02 3.40 -351.90 -1.20 -4.22 16 7 C 0.11 -0.22 6.99 85.63 0.60 0.38 16 8 C 0.50 2.20 7.86 87.66 0.69 2.89 16 9 O -0.57 -9.86 15.32 -3.03 -0.05 -9.91 16 10 N -0.70 2.17 5.36 -440.03 -2.36 -0.19 16 11 C 0.12 -0.02 4.21 45.52 0.19 0.18 16 12 H 0.09 0.56 7.50 -2.39 -0.02 0.54 16 13 C -0.12 0.47 7.30 31.12 0.23 0.70 16 14 C -0.07 0.11 3.97 -10.95 -0.04 0.06 16 15 H 0.10 -0.11 8.09 -2.39 -0.02 -0.13 16 16 C -0.08 -0.02 5.29 -19.87 -0.11 -0.13 16 17 C -0.12 0.15 8.60 22.27 0.19 0.34 16 18 C -0.13 0.07 10.05 22.27 0.22 0.30 16 19 C -0.14 -0.08 10.05 22.27 0.22 0.14 16 20 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 21 C -0.13 -0.20 9.71 22.27 0.22 0.01 16 22 C -0.14 0.12 7.27 31.18 0.23 0.34 16 23 N -0.29 -4.74 11.63 -48.16 -0.56 -5.30 16 24 C 0.11 1.66 6.74 42.53 0.29 1.95 16 25 C -0.04 -0.56 5.80 -20.04 -0.12 -0.67 16 26 C -0.11 -0.99 8.95 22.48 0.20 -0.79 16 27 C -0.13 -0.59 10.03 22.24 0.22 -0.37 16 28 C -0.11 -0.48 10.04 22.31 0.22 -0.25 16 29 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 30 C -0.11 -1.29 9.75 22.48 0.22 -1.07 16 31 H 0.40 -4.11 8.74 -74.05 -0.65 -4.76 16 32 H 0.08 0.03 7.86 -2.38 -0.02 0.01 16 33 H -0.28 -0.44 7.04 99.48 0.70 0.26 16 34 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 35 H 0.20 -0.08 6.36 -2.91 -0.02 -0.10 16 36 H 0.15 -1.09 8.14 -2.39 -0.02 -1.11 16 37 H 0.17 -2.02 8.07 -2.39 -0.02 -2.04 16 38 H 0.42 -4.79 8.71 -92.70 -0.81 -5.60 16 39 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.11 -0.76 7.68 -2.39 -0.02 -0.78 16 41 H 0.14 -0.79 6.69 -2.91 -0.02 -0.81 16 42 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 43 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 44 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 46 H 0.10 -0.35 6.35 -2.39 -0.02 -0.37 16 47 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.16 1.19 4.51 -2.91 -0.01 1.17 16 49 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 50 H 0.15 -0.21 8.06 -2.91 -0.02 -0.23 16 51 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 52 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 Total: 0.00 -34.67 430.16 0.99 -33.68 By element: Atomic # 1 Polarization: -13.38 SS G_CDS: -0.45 Total: -13.84 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 4.99 Total: 2.37 kcal Atomic # 7 Polarization: -5.59 SS G_CDS: -4.12 Total: -9.71 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.54 Total: -12.02 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.11 Total: -0.49 kcal Total: -34.67 0.99 -33.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.642 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds