Wall clock time and date at job start Sun Mar 7 2021 08:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47175 * 2 1 4 4 C 1.50704 * 109.47055 * 120.00240 * 2 1 3 5 5 C 1.34828 * 125.65392 * 64.94671 * 4 2 1 6 6 C 1.40800 * 107.04950 * 180.02562 * 5 4 2 7 7 C 1.36105 * 106.73149 * 0.02562 * 6 5 4 8 8 C 1.47570 * 125.94229 * 179.97438 * 7 6 5 9 9 C 1.39565 * 119.95598 * 180.02562 * 8 7 6 10 10 C 1.38317 * 119.81267 * 179.97438 * 9 8 7 11 11 O 1.35679 * 120.13694 * 180.02562 * 10 9 8 12 12 C 1.40369 * 119.72809 * 359.97438 * 10 9 8 13 13 C 1.47284 * 120.04915 * 180.02562 * 12 10 9 14 14 O 1.21627 * 119.99778 * 0.02562 * 13 12 10 15 15 N 1.34779 * 120.00467 * 180.02562 * 13 12 10 16 16 C 1.46496 * 120.00171 * 180.02562 * 15 13 12 17 17 H 1.09005 * 112.85109 * 23.80657 * 16 15 13 18 18 C 1.53781 * 113.61155 * 154.99776 * 16 15 13 19 19 C 1.53782 * 87.08144 * 139.98297 * 18 16 15 20 20 H 1.08999 * 113.61521 * 89.11463 * 19 18 16 21 21 C 1.50701 * 113.61401 * 220.02382 * 19 18 16 22 22 C 1.38231 * 120.00517 * 59.71744 * 21 19 18 23 23 C 1.38233 * 120.00226 * 179.78779 * 22 21 19 24 24 C 1.38233 * 119.99917 * 0.44994 * 23 22 21 25 25 C 1.38236 * 120.00038 * 359.80424 * 24 23 22 26 26 C 1.38235 * 119.99694 * 239.99822 * 21 19 18 27 27 C 1.53783 * 113.61292 * 252.49186 * 16 15 13 28 28 C 1.39924 * 119.90600 * 0.02562 * 12 10 9 29 29 C 1.36395 * 120.18238 * 359.73588 * 28 12 10 30 30 O 1.34228 * 125.65139 * 244.97303 * 4 2 1 31 31 H 0.96698 * 113.99867 * 59.99933 * 1 2 3 32 32 H 1.09002 * 109.46938 * 240.00039 * 2 1 3 33 33 H 1.48503 * 109.99991 * 60.00332 * 3 2 1 34 34 H 1.48505 * 109.99904 * 181.31970 * 3 2 1 35 35 H 1.08000 * 126.47903 * 0.04485 * 5 4 2 36 36 H 1.08000 * 126.63150 * 180.26218 * 6 5 4 37 37 H 1.08003 * 120.09171 * 359.95639 * 9 8 7 38 38 H 0.96693 * 114.00014 * 89.99603 * 11 10 9 39 39 H 0.96999 * 119.99460 * 359.97438 * 15 13 12 40 40 H 1.09006 * 113.61635 * 254.52864 * 18 16 15 41 41 H 1.09001 * 113.61810 * 25.34777 * 18 16 15 42 42 H 1.07999 * 119.99440 * 0.02562 * 22 21 19 43 43 H 1.07996 * 120.00307 * 180.27871 * 23 22 21 44 44 H 1.07999 * 120.00105 * 179.83874 * 24 23 22 45 45 H 1.08005 * 120.00172 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.99925 * 359.97438 * 26 21 19 47 47 H 1.08995 * 113.61673 * 334.57367 * 27 16 15 48 48 H 1.09005 * 113.60714 * 105.47224 * 27 16 15 49 49 H 1.07998 * 119.90420 * 180.02562 * 28 12 10 50 50 H 1.07997 * 119.85819 * 180.25095 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7559 -2.0178 1.5098 6 6 2.3795 -2.2627 2.7482 7 6 2.9070 -1.0783 3.1622 8 6 3.6556 -0.8539 4.4140 9 6 4.1428 0.4186 4.7161 10 6 4.8436 0.6257 5.8905 11 8 5.3197 1.8601 6.1910 12 6 5.0593 -0.4463 6.7706 13 6 5.8042 -0.2336 8.0233 14 8 6.2324 0.8716 8.2960 15 7 6.0112 -1.2637 8.8675 16 6 6.7516 -1.0520 10.1138 17 1 6.7239 -0.0160 10.4518 18 6 6.4074 -2.0686 11.2150 19 6 7.9065 -2.0867 11.5575 20 1 8.1960 -1.3338 12.2906 21 6 8.4340 -3.4594 11.8868 22 6 8.3521 -4.4741 10.9516 23 6 8.8400 -5.7321 11.2521 24 6 9.4013 -5.9779 12.4912 25 6 9.4784 -4.9646 13.4284 26 6 8.9945 -3.7055 13.1262 27 6 8.1637 -1.6608 10.1024 28 6 4.5657 -1.7173 6.4562 29 6 3.8710 -1.9162 5.2994 30 8 2.6272 -0.1465 2.2302 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5616 2.4678 1.2086 34 1 3.5347 1.7702 -0.0321 35 1 1.2357 -2.7407 0.8989 36 1 2.4327 -3.2083 3.2671 37 1 3.9733 1.2392 4.0347 38 1 4.7026 2.4077 6.6952 39 1 5.6693 -2.1450 8.6502 40 1 5.7831 -1.6581 12.0087 41 1 6.0343 -3.0183 10.8315 42 1 7.9105 -4.2829 9.9848 43 1 8.7801 -6.5236 10.5199 44 1 9.7801 -6.9614 12.7270 45 1 9.9174 -5.1565 14.3964 46 1 9.0547 -2.9138 13.8584 47 1 8.2721 -2.4994 9.4146 48 1 8.9573 -0.9209 9.9978 49 1 4.7314 -2.5419 7.1336 50 1 3.4888 -2.8985 5.0639 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:25 Heat of formation + Delta-G solvation = -2.842626 kcal Electronic energy + Delta-G solvation = -34219.413135 eV Core-core repulsion = 29532.150071 eV Total energy + Delta-G solvation = -4687.263064 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.150 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.88589 -41.83547 -41.01245 -39.76499 -38.58651 -38.08986 -37.83515 -34.99725 -34.35431 -33.43225 -31.86569 -31.67039 -31.37463 -30.54882 -27.33221 -26.71984 -25.96625 -24.42787 -24.15778 -23.57901 -22.81322 -22.30786 -21.85115 -21.39480 -20.52437 -19.70234 -18.72307 -18.69885 -18.22264 -18.09644 -17.29054 -17.24855 -16.76459 -16.56701 -16.32429 -16.21411 -16.10585 -15.88911 -15.67824 -15.55428 -15.23731 -14.89261 -14.53650 -14.37962 -14.28875 -14.22504 -14.18191 -14.01239 -13.91747 -13.68066 -13.62723 -13.46658 -13.12901 -12.85971 -12.72981 -12.54338 -12.31902 -12.28152 -12.00339 -11.81156 -11.66275 -11.46716 -11.25748 -10.94232 -10.80624 -10.46763 -10.13996 -10.06237 -9.80878 -9.54607 -9.12609 -5.16153 -0.90915 0.02250 0.43630 0.50953 0.51437 1.10918 1.29475 1.48685 1.57738 1.82699 1.94975 2.01441 2.53256 2.84349 2.89977 3.18418 3.42685 3.47864 3.55796 3.68761 3.69107 3.70407 3.72382 3.88187 3.89056 3.92449 4.05179 4.10046 4.14358 4.18295 4.25512 4.30055 4.33784 4.50885 4.55345 4.58259 4.62764 4.66817 4.70021 4.72648 4.79386 4.82552 4.93910 4.96929 4.99110 5.00687 5.08655 5.11138 5.17219 5.21162 5.33747 5.42448 5.51251 5.59580 5.65402 5.74330 5.84677 6.13309 6.43506 6.57809 6.80560 7.11526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.034 4.034 3 Si 0.799 3.201 4 C -0.031 4.031 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.023 3.977 9 C -0.161 4.161 10 C 0.161 3.839 11 O -0.495 6.495 12 C -0.177 4.177 13 C 0.557 3.443 14 O -0.564 6.564 15 N -0.700 5.700 16 C 0.120 3.880 17 H 0.098 0.902 18 C -0.121 4.121 19 C -0.068 4.068 20 H 0.104 0.896 21 C -0.076 4.076 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.143 4.143 28 C -0.047 4.047 29 C -0.106 4.106 30 O -0.198 6.198 31 H 0.414 0.586 32 H 0.130 0.870 33 H -0.310 1.310 34 H -0.298 1.298 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.123 0.877 38 H 0.408 0.592 39 H 0.415 0.585 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.062 0.938 49 H 0.178 0.822 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -6.783 -3.124 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.144 4.144 3 Si 0.706 3.294 4 C -0.080 4.080 5 C -0.193 4.193 6 C -0.185 4.185 7 C -0.054 4.054 8 C 0.022 3.978 9 C -0.180 4.180 10 C 0.115 3.885 11 O -0.308 6.308 12 C -0.180 4.180 13 C 0.345 3.655 14 O -0.443 6.443 15 N -0.352 5.352 16 C 0.015 3.985 17 H 0.116 0.884 18 C -0.159 4.159 19 C -0.087 4.087 20 H 0.122 0.878 21 C -0.076 4.076 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.181 4.181 28 C -0.065 4.065 29 C -0.124 4.124 30 O -0.097 6.097 31 H 0.267 0.733 32 H 0.147 0.853 33 H -0.239 1.239 34 H -0.226 1.226 35 H 0.195 0.805 36 H 0.208 0.792 37 H 0.141 0.859 38 H 0.268 0.732 39 H 0.254 0.746 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.196 0.804 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.854 -5.588 -2.247 6.664 hybrid contribution -0.205 -0.153 0.445 0.513 sum -3.059 -5.740 -1.802 6.749 Atomic orbital electron populations 1.86410 1.15964 1.82507 1.52170 1.23888 0.86553 1.11125 0.92829 0.94480 0.76865 0.74365 0.83677 1.22225 1.00399 0.93815 0.91611 1.21912 1.03427 0.95564 0.98396 1.22330 1.00287 0.98808 0.97042 1.20750 1.05255 0.88204 0.91211 1.18013 0.95451 0.94011 0.90326 1.21492 1.00291 0.97977 0.98214 1.18467 0.92135 0.85966 0.91978 1.84722 1.45609 1.23648 1.76858 1.20551 1.05437 0.95959 0.96093 1.18207 0.79155 0.84551 0.83554 1.90821 1.51826 1.25581 1.76115 1.45762 1.56636 1.12136 1.20688 1.22518 0.91870 1.00315 0.83780 0.88351 1.23400 0.95536 0.99508 0.97430 1.21301 0.96332 0.93890 0.97141 0.87824 1.19780 0.98555 0.95142 0.94162 1.21218 1.00425 0.92737 0.99815 1.21438 0.98334 0.97565 0.97236 1.21455 0.99986 0.99915 0.94253 1.21424 0.99826 0.93426 1.00214 1.21316 0.99066 0.97591 0.96939 1.23612 0.97002 1.01078 0.96446 1.21230 0.93370 0.95191 0.96729 1.21085 0.99237 0.99196 0.92888 1.83953 1.58853 1.39453 1.27408 0.73282 0.85299 1.23878 1.22608 0.80502 0.79168 0.85903 0.73153 0.74602 0.89799 0.87759 0.84527 0.84573 0.85010 0.85052 0.85268 0.88394 0.91936 0.80437 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.09 12.86 -148.98 -1.92 -0.82 16 2 C -0.03 0.04 2.97 71.24 0.21 0.25 16 3 Si 0.80 0.05 32.11 68.60 2.20 2.25 16 4 C -0.03 -0.19 6.24 24.90 0.16 -0.03 16 5 C -0.17 -0.48 10.78 22.11 0.24 -0.24 16 6 C -0.17 -0.24 10.26 22.40 0.23 -0.01 16 7 C -0.01 -0.04 7.02 24.24 0.17 0.14 16 8 C 0.02 0.10 5.87 -20.08 -0.12 -0.02 16 9 C -0.16 -1.28 9.65 22.61 0.22 -1.07 16 10 C 0.16 1.34 6.71 22.81 0.15 1.49 16 11 O -0.50 -5.31 11.56 -68.97 -0.80 -6.11 16 12 C -0.18 -0.70 5.89 -19.97 -0.12 -0.82 16 13 C 0.56 3.54 7.75 86.62 0.67 4.21 16 14 O -0.56 -8.57 14.74 16.88 0.25 -8.32 16 15 N -0.70 1.06 5.30 -443.42 -2.35 -1.29 16 16 C 0.12 -0.08 4.24 45.52 0.19 0.11 16 17 H 0.10 0.39 7.46 -2.38 -0.02 0.37 16 18 C -0.12 0.57 7.29 31.12 0.23 0.80 16 19 C -0.07 0.16 3.98 -11.01 -0.04 0.11 16 20 H 0.10 -0.26 8.10 -2.39 -0.02 -0.28 16 21 C -0.08 0.01 5.29 -19.87 -0.11 -0.10 16 22 C -0.12 0.15 8.60 22.27 0.19 0.34 16 23 C -0.13 0.06 10.05 22.27 0.22 0.29 16 24 C -0.14 -0.08 10.05 22.27 0.22 0.15 16 25 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 26 C -0.13 -0.13 9.71 22.27 0.22 0.08 16 27 C -0.14 0.14 7.25 31.12 0.23 0.37 16 28 C -0.05 0.19 9.47 22.25 0.21 0.40 16 29 C -0.11 0.32 9.48 22.26 0.21 0.53 16 30 O -0.20 -2.07 8.79 -5.92 -0.05 -2.12 16 31 H 0.41 -5.59 8.74 -74.06 -0.65 -6.24 16 32 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 33 H -0.31 -3.13 7.11 99.48 0.71 -2.42 16 34 H -0.30 -2.24 7.11 99.48 0.71 -1.53 16 35 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.19 -1.20 7.24 -2.91 -0.02 -1.22 16 37 H 0.12 1.23 7.90 -2.91 -0.02 1.21 16 38 H 0.41 1.41 9.06 -74.06 -0.67 0.74 16 39 H 0.42 -3.62 6.73 -92.71 -0.62 -4.25 16 40 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H 0.10 -0.78 7.69 -2.39 -0.02 -0.80 16 42 H 0.14 -0.74 6.67 -2.91 -0.02 -0.75 16 43 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 44 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 46 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 47 H 0.10 -0.27 6.32 -2.39 -0.02 -0.28 16 48 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 49 H 0.18 -2.27 6.38 -2.91 -0.02 -2.29 16 50 H 0.17 -1.76 6.95 -2.91 -0.02 -1.78 16 Total: 0.00 -32.31 421.96 0.27 -32.04 By element: Atomic # 1 Polarization: -21.81 SS G_CDS: -0.88 Total: -22.68 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 3.81 Total: 7.05 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -2.35 Total: -1.29 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -2.52 Total: -17.37 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.20 Total: 2.25 kcal Total: -32.31 0.27 -32.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.202 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds