Wall clock time and date at job start Sun Mar 7 2021 08:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39282 * 121.02778 * 2 1 4 4 C 1.46499 * 134.20236 * 359.97438 * 3 2 1 5 5 C 1.50694 * 126.59893 * 0.02562 * 4 3 2 6 6 O 1.42897 * 109.47343 * 75.00106 * 5 4 3 7 7 Si 1.86302 * 109.47049 * 195.00088 * 5 4 3 8 8 C 1.34180 * 106.79850 * 180.02562 * 4 3 2 9 9 N 1.36943 * 109.95834 * 359.97438 * 8 4 3 10 10 C 1.37162 * 110.11184 * 0.02562 * 9 8 4 11 11 N 1.32814 * 132.96606 * 180.02562 * 10 9 8 12 12 C 1.31317 * 121.88991 * 179.73769 * 11 10 9 13 13 C 1.39747 * 121.03065 * 180.02562 * 2 1 3 14 14 C 1.47660 * 120.45431 * 359.97438 * 13 2 1 15 15 O 1.21579 * 120.00261 * 354.29913 * 14 13 2 16 16 N 1.34778 * 120.00227 * 174.29945 * 14 13 2 17 17 C 1.46501 * 120.00419 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.90518 * 336.25433 * 17 16 14 19 19 C 1.53956 * 113.66689 * 107.55038 * 17 16 14 20 20 C 1.53773 * 87.11205 * 139.89099 * 19 17 16 21 21 H 1.09006 * 113.61366 * 89.18404 * 20 19 17 22 22 C 1.50697 * 113.61718 * 220.08822 * 20 19 17 23 23 C 1.38244 * 119.99590 * 37.22702 * 22 20 19 24 24 C 1.38235 * 119.99473 * 179.81378 * 23 22 20 25 25 C 1.38230 * 120.00252 * 0.39225 * 24 23 22 26 26 C 1.38238 * 120.00001 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00150 * 359.95781 * 26 25 24 28 28 C 1.53777 * 113.61577 * 204.99785 * 17 16 14 29 29 H 1.09005 * 109.47113 * 263.69413 * 1 2 3 30 30 H 1.09004 * 109.47334 * 23.68935 * 1 2 3 31 31 H 1.08997 * 109.47240 * 143.69149 * 1 2 3 32 32 H 1.09001 * 109.47183 * 314.99928 * 5 4 3 33 33 H 0.96701 * 114.00418 * 179.97438 * 6 5 4 34 34 H 1.48500 * 110.00096 * 178.68281 * 7 5 4 35 35 H 1.48506 * 110.00017 * 300.00167 * 7 5 4 36 36 H 1.08011 * 125.02012 * 180.02562 * 8 4 3 37 37 H 0.97001 * 124.95097 * 179.97438 * 9 8 4 38 38 H 1.07999 * 119.30932 * 180.26852 * 12 11 10 39 39 H 0.97005 * 119.99970 * 359.97438 * 16 14 13 40 40 H 1.09006 * 113.53879 * 25.33785 * 19 17 16 41 41 H 1.09003 * 113.73999 * 254.47596 * 19 17 16 42 42 H 1.07990 * 119.99955 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.99779 * 180.23498 * 24 23 22 44 44 H 1.08007 * 119.99997 * 179.84010 * 25 24 23 45 45 H 1.08004 * 119.99543 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00070 * 179.97438 * 27 26 25 47 47 H 1.09004 * 113.61247 * 105.46895 * 28 17 16 48 48 H 1.08997 * 113.61344 * 334.65450 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1935 0.0000 4 6 1.8515 2.6101 -0.0005 5 6 0.4526 3.1704 -0.0006 6 8 -0.1192 3.0244 1.3008 7 14 0.5070 4.9762 -0.4559 8 6 2.9947 3.3126 -0.0008 9 7 4.0668 2.4606 0.0000 10 6 3.6348 1.1588 0.0003 11 7 4.2720 -0.0065 0.0015 12 6 3.6266 -1.1501 0.0066 13 6 2.2274 -1.1975 -0.0005 14 6 1.5225 -2.4950 -0.0005 15 8 0.3117 -2.5290 0.1045 16 7 2.2212 -3.6416 -0.1170 17 6 1.5220 -4.9289 -0.1164 18 1 0.5515 -4.8843 0.3779 19 6 1.4803 -5.6102 -1.4964 20 6 1.7353 -6.9372 -0.7625 21 1 0.8232 -7.4428 -0.4450 22 6 2.6923 -7.8515 -1.4831 23 6 3.7785 -7.3235 -2.1557 24 6 4.6586 -8.1624 -2.8134 25 6 4.4479 -9.5286 -2.8054 26 6 3.3588 -10.0561 -2.1372 27 6 2.4809 -9.2176 -1.4762 28 6 2.3968 -6.1050 0.3485 29 1 -0.3633 -0.1129 1.0215 30 1 -0.3634 0.9411 -0.4129 31 1 -0.3633 -0.8281 -0.6085 32 1 -0.1550 2.6307 -0.7271 33 1 -1.0213 3.3648 1.3746 34 1 -0.8693 5.5329 -0.4906 35 1 1.3324 5.7232 0.5270 36 1 3.0597 4.3907 -0.0007 37 1 4.9965 2.7373 -0.0003 38 1 4.1869 -2.0734 0.0118 39 1 3.1872 -3.6144 -0.2012 40 1 2.2965 -5.3112 -2.1543 41 1 0.5055 -5.5597 -1.9815 42 1 3.9410 -6.2559 -2.1651 43 1 5.5093 -7.7503 -3.3357 44 1 5.1341 -10.1838 -3.3215 45 1 3.1941 -11.1235 -2.1313 46 1 1.6298 -9.6297 -0.9545 47 1 2.1613 -6.4535 1.3542 48 1 3.4637 -5.9425 0.1959 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:29 Heat of formation + Delta-G solvation = 66.876172 kcal Electronic energy + Delta-G solvation = -31461.417460 eV Core-core repulsion = 27256.378714 eV Total energy + Delta-G solvation = -4205.038746 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.85472 -41.48764 -40.47556 -38.99701 -38.44069 -37.81043 -35.29981 -34.69990 -32.12964 -31.90871 -31.71036 -30.76859 -28.95431 -26.68707 -26.63640 -25.94250 -24.59440 -23.98376 -23.52386 -22.43141 -21.73557 -20.53985 -20.21943 -19.27661 -18.61999 -18.49165 -18.14522 -17.53672 -17.13484 -16.68310 -16.53281 -16.33967 -15.94727 -15.82849 -15.53133 -15.31396 -15.22030 -15.05117 -14.70190 -14.33552 -14.19985 -14.12406 -14.02650 -13.92042 -13.73508 -13.59062 -13.41425 -13.28290 -13.13947 -13.00099 -12.64774 -12.47636 -12.25685 -11.98273 -11.75770 -11.62924 -11.41919 -11.19953 -11.12220 -10.44987 -10.23642 -10.09224 -9.78847 -9.62756 -9.51476 -9.13014 -4.85918 -0.34935 -0.08348 0.46056 0.53119 1.32575 1.38743 1.61560 1.70244 1.79168 1.99881 2.09934 2.74365 2.86822 3.29895 3.37932 3.50079 3.59528 3.66752 3.68440 3.74320 3.78286 3.79352 3.96874 4.08371 4.12056 4.16596 4.17992 4.21243 4.31320 4.31825 4.33535 4.58342 4.60548 4.64934 4.70850 4.73343 4.77424 4.79673 4.86382 4.96984 5.03234 5.05351 5.11992 5.16913 5.20952 5.23607 5.25562 5.40366 5.57939 5.61910 5.67417 5.72416 5.77256 6.15498 6.20965 6.49442 6.66155 6.82101 7.17608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.062 3.938 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.061 4.061 6 O -0.558 6.558 7 Si 0.776 3.224 8 C 0.087 3.913 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.515 5.515 12 C 0.180 3.820 13 C -0.242 4.242 14 C 0.572 3.428 15 O -0.566 6.566 16 N -0.702 5.702 17 C 0.122 3.878 18 H 0.102 0.898 19 C -0.141 4.141 20 C -0.068 4.068 21 H 0.105 0.895 22 C -0.076 4.076 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.391 0.609 34 H -0.290 1.290 35 H -0.278 1.278 36 H 0.216 0.784 37 H 0.439 0.561 38 H 0.195 0.805 39 H 0.413 0.587 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.082 0.918 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 2.007 -3.199 5.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.054 3.946 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.169 4.169 6 O -0.368 6.368 7 Si 0.679 3.321 8 C -0.039 4.039 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.012 3.988 13 C -0.249 4.249 14 C 0.360 3.640 15 O -0.446 6.446 16 N -0.354 5.354 17 C 0.018 3.982 18 H 0.120 0.880 19 C -0.179 4.179 20 C -0.087 4.087 21 H 0.123 0.877 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.162 4.162 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.241 0.759 34 H -0.217 1.217 35 H -0.204 1.204 36 H 0.233 0.767 37 H 0.280 0.720 38 H 0.212 0.788 39 H 0.251 0.749 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.101 0.899 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.097 2.686 -2.754 5.620 hybrid contribution -1.045 -0.499 0.874 1.450 sum 3.053 2.187 -1.880 4.199 Atomic orbital electron populations 1.21011 0.89203 1.03491 1.03061 1.20081 0.97243 0.90060 0.87260 1.19753 0.93393 0.94352 1.09906 1.19723 0.94481 0.90065 1.12470 1.24540 0.91550 1.13262 0.87519 1.86599 1.34870 1.84547 1.30737 0.94173 0.80380 0.70479 0.87111 1.22228 0.84174 0.97097 1.00441 1.41561 1.10501 1.01765 1.62809 1.18759 0.89482 0.86830 0.99436 1.66517 1.40808 0.96404 1.19127 1.22981 0.89740 0.95268 0.90827 1.20519 0.95451 0.93418 1.15493 1.18004 0.86499 0.84030 0.75445 1.90732 1.15032 1.87508 1.51333 1.45761 1.11119 1.04749 1.73744 1.22531 0.97420 0.80726 0.97561 0.88004 1.23627 1.03016 0.94428 0.96876 1.21301 0.97858 0.93285 0.96219 0.87689 1.19799 0.95987 0.93819 0.97992 1.21227 0.94588 1.00597 0.97838 1.21434 0.99886 0.93826 0.99528 1.21447 0.98298 0.95965 0.99932 1.21421 0.95121 1.00625 0.97726 1.21316 1.00112 0.93360 1.00057 1.23407 1.00291 0.93389 0.99135 0.91115 0.90455 0.89652 0.90052 0.75864 1.21696 1.20442 0.76721 0.71985 0.78850 0.74898 0.88578 0.91504 0.84621 0.84712 0.85059 0.85036 0.85175 0.89929 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 8.69 71.24 0.62 -0.28 16 2 C 0.06 0.53 5.98 -19.25 -0.12 0.42 16 3 C -0.17 -1.23 6.16 -20.19 -0.12 -1.35 16 4 C -0.16 -0.45 5.61 -18.64 -0.10 -0.55 16 5 C -0.06 0.01 2.05 71.23 0.15 0.16 16 6 O -0.56 -1.70 12.86 -148.98 -1.92 -3.61 16 7 Si 0.78 -3.61 30.80 68.60 2.11 -1.50 16 8 C 0.09 -0.20 10.44 82.97 0.87 0.66 16 9 N -0.56 0.52 6.04 -192.24 -1.16 -0.64 16 10 C 0.29 1.68 8.42 134.02 1.13 2.81 16 11 N -0.52 -2.97 10.37 -191.74 -1.99 -4.96 16 12 C 0.18 0.44 10.67 85.20 0.91 1.35 16 13 C -0.24 -1.45 5.89 -20.00 -0.12 -1.57 16 14 C 0.57 3.56 7.72 86.73 0.67 4.23 16 15 O -0.57 -7.31 13.09 -3.97 -0.05 -7.36 16 16 N -0.70 0.64 5.31 -442.80 -2.35 -1.71 16 17 C 0.12 -0.10 4.25 45.58 0.19 0.09 16 18 H 0.10 0.32 7.47 -2.39 -0.02 0.31 16 19 C -0.14 0.22 7.26 31.18 0.23 0.44 16 20 C -0.07 0.16 3.98 -11.02 -0.04 0.11 16 21 H 0.10 -0.30 8.10 -2.38 -0.02 -0.32 16 22 C -0.08 -0.02 5.29 -19.86 -0.11 -0.12 16 23 C -0.12 0.06 8.63 22.27 0.19 0.25 16 24 C -0.13 -0.03 10.05 22.27 0.22 0.19 16 25 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 26 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 27 C -0.13 -0.16 9.71 22.27 0.22 0.06 16 28 C -0.12 0.51 7.29 31.12 0.23 0.73 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.37 5.05 -2.38 -0.01 0.35 16 31 H 0.09 0.88 5.95 -2.39 -0.01 0.87 16 32 H 0.08 -0.15 6.05 -2.39 -0.01 -0.16 16 33 H 0.39 -1.85 8.74 -74.06 -0.65 -2.50 16 34 H -0.29 -0.19 7.11 99.48 0.71 0.52 16 35 H -0.28 0.12 7.04 99.48 0.70 0.82 16 36 H 0.22 -2.09 6.31 -2.91 -0.02 -2.11 16 37 H 0.44 -2.98 8.96 -92.71 -0.83 -3.81 16 38 H 0.19 -1.17 6.43 -2.91 -0.02 -1.19 16 39 H 0.41 -2.86 6.80 -92.70 -0.63 -3.49 16 40 H 0.10 -0.27 6.30 -2.38 -0.02 -0.29 16 41 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.14 -0.59 6.64 -2.92 -0.02 -0.61 16 43 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 44 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 45 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 46 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 47 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.10 -0.62 7.71 -2.39 -0.02 -0.64 16 Total: 0.00 -24.18 387.94 -0.92 -25.10 By element: Atomic # 1 Polarization: -12.06 SS G_CDS: -1.02 Total: -13.08 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.45 Total: 7.76 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -5.50 Total: -7.31 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -1.97 Total: -10.98 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.11 Total: -1.50 kcal Total: -24.18 -0.92 -25.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.975 kcal (2) G-P(sol) polarization free energy of solvation -24.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds