Wall clock time and date at job start Sun Mar 7 2021 08:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38340 * 119.87245 * 119.72433 * 4 2 1 6 6 C 1.38000 * 120.12364 * 179.72744 * 5 4 2 7 7 C 1.39399 * 119.87572 * 0.54334 * 6 5 4 8 8 C 1.48269 * 120.12886 * 179.70838 * 7 6 5 9 9 C 1.39511 * 119.97676 * 179.75077 * 8 7 6 10 10 C 1.37660 * 120.02396 * 179.72587 * 9 8 7 11 11 C 1.39709 * 119.97925 * 0.54267 * 10 9 8 12 12 C 1.47715 * 120.02732 * 179.70570 * 11 10 9 13 13 O 1.21573 * 119.99673 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00164 * 0.02562 * 12 11 10 15 15 C 1.46497 * 119.99820 * 180.02562 * 14 12 11 16 16 H 1.08994 * 112.85370 * 336.19409 * 15 14 12 17 17 C 1.53789 * 113.61224 * 107.50451 * 15 14 12 18 18 C 1.53783 * 87.07992 * 139.97785 * 17 15 14 19 19 H 1.08998 * 113.69127 * 89.12356 * 18 17 15 20 20 C 1.50700 * 113.61514 * 220.01795 * 18 17 15 21 21 C 1.38234 * 119.99652 * 37.22229 * 20 18 17 22 22 C 1.38242 * 119.99714 * 179.79076 * 21 20 18 23 23 C 1.38235 * 119.99777 * 0.46319 * 22 21 20 24 24 C 1.38232 * 120.00227 * 359.76676 * 23 22 21 25 25 C 1.38228 * 119.99959 * 217.49794 * 20 18 17 26 26 C 1.53778 * 87.08159 * 334.56723 * 18 17 15 27 27 C 1.39709 * 119.94826 * 359.72755 * 11 10 9 28 28 C 1.37663 * 119.97525 * 0.02562 * 27 11 10 29 29 C 1.39405 * 119.74389 * 359.72651 * 7 6 5 30 30 C 1.37997 * 119.87229 * 0.02562 * 29 7 6 31 31 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 32 32 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 33 33 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 34 34 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 35 35 H 1.07998 * 119.93240 * 359.97438 * 5 4 2 36 36 H 1.08006 * 120.05973 * 180.27517 * 6 5 4 37 37 H 1.08002 * 119.98557 * 359.97293 * 9 8 7 38 38 H 1.08000 * 120.01467 * 180.27293 * 10 9 8 39 39 H 0.96996 * 119.99831 * 359.97438 * 14 12 11 40 40 H 1.08999 * 113.61054 * 254.52532 * 17 15 14 41 41 H 1.09001 * 113.61645 * 25.42998 * 17 15 14 42 42 H 1.08001 * 120.00587 * 0.02562 * 21 20 18 43 43 H 1.07995 * 120.00200 * 180.25495 * 22 21 20 44 44 H 1.07999 * 119.99909 * 179.78984 * 23 22 21 45 45 H 1.08003 * 120.00307 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.00668 * 359.97438 * 25 20 18 47 47 H 1.09007 * 113.61446 * 270.88540 * 26 18 17 48 48 H 1.08999 * 113.61910 * 139.98227 * 26 18 17 49 49 H 1.07997 * 120.01436 * 180.02562 * 27 11 10 50 50 H 1.08003 * 119.98791 * 179.97438 * 28 27 11 51 51 H 1.08001 * 120.06252 * 179.97438 * 29 7 6 52 52 H 1.07994 * 119.94067 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7217 -0.0337 -2.1422 6 6 3.1892 -0.6807 -3.2679 7 6 2.8542 -2.0153 -3.4913 8 6 3.3480 -2.7140 -4.7021 9 6 3.0151 -4.0512 -4.9199 10 6 3.4684 -4.6993 -6.0466 11 6 4.2715 -4.0208 -6.9666 12 6 4.7639 -4.7170 -8.1728 13 8 5.4631 -4.1262 -8.9728 14 7 4.4380 -6.0073 -8.3864 15 6 4.9268 -6.6979 -9.5823 16 1 5.1708 -6.0146 -10.3957 17 6 6.0291 -7.7298 -9.2904 18 6 5.3458 -8.6363 -10.3279 19 1 5.7047 -8.4849 -11.3458 20 6 5.3106 -10.0894 -9.9299 21 6 5.1099 -10.4391 -8.6077 22 6 5.0733 -11.7722 -8.2432 23 6 5.2470 -12.7551 -9.1995 24 6 5.4525 -12.4053 -10.5210 25 6 5.4848 -11.0723 -10.8861 26 6 4.0438 -7.8803 -10.0150 27 6 4.6090 -2.6833 -6.7448 28 6 4.1504 -2.0357 -5.6199 29 6 2.0527 -2.6903 -2.5719 30 6 1.5952 -2.0346 -1.4471 31 1 -0.3934 0.4417 -0.7650 32 1 1.7923 -0.5138 0.8900 33 1 1.5614 2.4679 1.2086 34 1 3.5344 1.7704 -0.0321 35 1 2.9767 1.0016 -1.9706 36 1 3.8100 -0.1528 -3.9768 37 1 2.3981 -4.5770 -4.2061 38 1 3.2069 -5.7332 -6.2172 39 1 3.8804 -6.4787 -7.7479 40 1 7.0249 -7.4005 -9.5869 41 1 5.9979 -8.1268 -8.2758 42 1 4.9778 -9.6711 -7.8599 43 1 4.9123 -12.0455 -7.2109 44 1 5.2218 -13.7965 -8.9143 45 1 5.5886 -13.1732 -11.2681 46 1 5.6457 -10.7990 -11.9185 47 1 3.4699 -8.3184 -9.1983 48 1 3.4369 -7.6724 -10.8962 49 1 5.2295 -2.1577 -7.4555 50 1 4.4115 -1.0019 -5.4480 51 1 1.7896 -3.7242 -2.7400 52 1 0.9739 -2.5564 -0.7343 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:32 Heat of formation + Delta-G solvation = 45.222488 kcal Electronic energy + Delta-G solvation = -32491.581127 eV Core-core repulsion = 28160.002948 eV Total energy + Delta-G solvation = -4331.578179 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.167 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.70008 -41.04761 -40.44216 -39.33513 -38.57267 -37.49978 -34.98986 -33.90778 -32.59011 -31.89077 -31.70187 -31.52682 -30.66815 -27.23214 -26.71546 -25.97511 -24.64965 -24.36271 -23.57296 -22.72109 -22.54486 -21.97547 -21.32601 -20.44170 -19.12634 -18.39986 -18.20918 -17.73325 -17.17819 -16.83883 -16.52336 -16.24966 -16.19385 -16.09861 -15.95556 -15.62350 -15.42966 -15.31842 -15.04805 -14.95792 -14.87260 -14.37138 -14.35074 -14.22078 -14.14992 -14.05408 -13.88965 -13.57444 -13.45978 -13.26209 -13.06484 -12.74218 -12.56955 -12.52366 -12.30210 -12.07499 -11.94805 -11.81604 -11.66882 -11.59366 -11.46536 -11.03041 -10.78628 -10.40252 -10.12175 -10.06156 -9.95610 -9.80655 -9.54427 -9.06671 -5.01270 -0.69000 0.35189 0.40683 0.43808 0.50377 0.51253 1.30603 1.61564 1.77881 1.95335 2.07935 2.60796 2.84566 3.01428 3.39598 3.45204 3.53537 3.62879 3.65318 3.70204 3.72592 3.80015 3.88165 3.92962 4.01471 4.04790 4.06688 4.15142 4.18971 4.27331 4.29203 4.30458 4.37384 4.47917 4.55341 4.62616 4.65020 4.66738 4.70369 4.73122 4.82887 4.88871 4.92190 4.96725 5.01048 5.08900 5.10018 5.13767 5.17743 5.20925 5.21745 5.27175 5.41868 5.50115 5.51895 5.59804 5.65604 5.65659 5.74625 5.80134 5.93510 6.13514 6.45604 6.75740 7.12089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.772 3.228 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.121 4.121 10 C -0.074 4.074 11 C -0.153 4.153 12 C 0.556 3.444 13 O -0.582 6.582 14 N -0.701 5.701 15 C 0.118 3.882 16 H 0.099 0.901 17 C -0.142 4.142 18 C -0.068 4.068 19 H 0.105 0.895 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.071 4.071 28 C -0.122 4.122 29 C -0.107 4.107 30 C -0.102 4.102 31 H 0.395 0.605 32 H 0.107 0.893 33 H -0.301 1.301 34 H -0.286 1.286 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.415 0.585 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.128 0.872 50 H 0.149 0.851 51 H 0.146 0.854 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -2.056 0.489 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.138 4.138 10 C -0.093 4.093 11 C -0.156 4.156 12 C 0.345 3.655 13 O -0.463 6.463 14 N -0.352 5.352 15 C 0.013 3.987 16 H 0.117 0.883 17 C -0.180 4.180 18 C -0.087 4.087 19 H 0.123 0.877 20 C -0.076 4.076 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.090 4.090 28 C -0.140 4.140 29 C -0.125 4.125 30 C -0.120 4.120 31 H 0.245 0.755 32 H 0.125 0.875 33 H -0.229 1.229 34 H -0.213 1.213 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.253 0.747 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.146 0.854 50 H 0.166 0.834 51 H 0.164 0.836 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.517 -1.382 0.870 3.000 hybrid contribution 0.176 -0.809 0.363 0.904 sum -2.341 -2.191 1.232 3.435 Atomic orbital electron populations 1.86467 1.17150 1.82142 1.50542 1.25146 0.85337 1.10592 0.97264 0.93735 0.77875 0.75643 0.84860 1.20533 0.98958 0.95441 0.96978 1.21140 0.98124 1.00227 0.94288 1.21483 0.99391 0.93834 0.97736 1.18933 0.98765 0.94169 0.94161 1.19151 0.95808 0.94035 0.93286 1.21469 1.00558 0.93690 0.98100 1.21461 0.94524 1.00693 0.92572 1.20009 1.03485 0.95705 0.96367 1.18606 0.79236 0.82163 0.85452 1.90769 1.39936 1.67358 1.48224 1.45799 1.52979 1.11053 1.25382 1.22534 0.95927 0.92161 0.88035 0.88273 1.23603 0.98523 0.95643 1.00248 1.21307 0.97683 0.89601 1.00072 0.87707 1.19783 0.99417 0.94730 0.93715 1.21216 1.00474 0.96624 0.95910 1.21437 0.99737 0.93109 1.00336 1.21453 1.00250 1.00380 0.93527 1.21427 0.99847 0.96685 0.96900 1.21322 1.00596 0.92950 1.00002 1.23402 0.96104 0.93664 1.02857 1.21268 0.97301 0.93436 0.96976 1.21389 0.97871 1.01273 0.93464 1.21517 0.96628 1.00905 0.93444 1.21089 0.99206 0.94053 0.97648 0.75469 0.87548 1.22940 1.21319 0.83873 0.83616 0.82693 0.82515 0.74668 0.91674 0.88460 0.84634 0.84644 0.85016 0.85012 0.85185 0.87978 0.89822 0.85439 0.83387 0.83633 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.41 12.76 -148.98 -1.90 -1.49 16 2 C -0.07 0.11 2.82 71.24 0.20 0.31 16 3 Si 0.77 -2.06 29.77 68.60 2.04 -0.01 16 4 C -0.12 0.15 5.40 -19.82 -0.11 0.04 16 5 C -0.12 0.31 8.65 22.24 0.19 0.50 16 6 C -0.11 0.23 9.43 22.49 0.21 0.44 16 7 C -0.06 0.06 5.88 -20.05 -0.12 -0.06 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 0.43 9.41 22.44 0.21 0.64 16 10 C -0.07 0.27 9.52 22.49 0.21 0.48 16 11 C -0.15 -0.36 5.88 -20.06 -0.12 -0.48 16 12 C 0.56 3.14 7.77 86.75 0.67 3.81 16 13 O -0.58 -8.39 15.93 -3.94 -0.06 -8.46 16 14 N -0.70 0.95 5.30 -443.02 -2.35 -1.40 16 15 C 0.12 -0.09 4.24 45.52 0.19 0.10 16 16 H 0.10 0.37 7.46 -2.39 -0.02 0.35 16 17 C -0.14 0.20 7.25 31.12 0.23 0.43 16 18 C -0.07 0.17 3.98 -11.01 -0.04 0.13 16 19 H 0.10 -0.30 8.09 -2.39 -0.02 -0.32 16 20 C -0.08 0.01 5.29 -19.87 -0.11 -0.09 16 21 C -0.12 0.13 8.62 22.27 0.19 0.33 16 22 C -0.13 0.05 10.05 22.27 0.22 0.27 16 23 C -0.14 -0.07 10.05 22.27 0.22 0.15 16 24 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 25 C -0.13 -0.11 9.71 22.27 0.22 0.11 16 26 C -0.12 0.55 7.30 31.12 0.23 0.77 16 27 C -0.07 -0.24 9.58 22.49 0.22 -0.02 16 28 C -0.12 -0.01 9.41 22.44 0.21 0.20 16 29 C -0.11 0.23 9.43 22.49 0.21 0.44 16 30 C -0.10 0.10 9.59 22.24 0.21 0.31 16 31 H 0.40 -3.41 8.70 -74.06 -0.64 -4.06 16 32 H 0.11 -0.02 7.96 -2.39 -0.02 -0.03 16 33 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 34 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 35 H 0.14 -0.89 4.86 -2.91 -0.01 -0.91 16 36 H 0.15 -0.85 6.19 -2.91 -0.02 -0.87 16 37 H 0.16 -1.31 6.19 -2.91 -0.02 -1.33 16 38 H 0.16 -1.64 6.39 -2.91 -0.02 -1.66 16 39 H 0.41 -3.25 6.74 -92.71 -0.63 -3.88 16 40 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.10 -0.29 6.30 -2.39 -0.02 -0.31 16 42 H 0.14 -0.69 6.64 -2.91 -0.02 -0.71 16 43 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 44 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.13 -0.24 8.05 -2.91 -0.02 -0.26 16 47 H 0.10 -0.70 7.71 -2.38 -0.02 -0.71 16 48 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H 0.13 0.64 7.64 -2.91 -0.02 0.62 16 50 H 0.15 -0.58 6.19 -2.91 -0.02 -0.60 16 51 H 0.15 -0.94 6.19 -2.91 -0.02 -0.96 16 52 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 Total: 0.00 -21.90 422.98 1.15 -20.74 By element: Atomic # 1 Polarization: -17.95 SS G_CDS: -0.25 Total: -18.20 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 3.67 Total: 8.82 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -2.35 Total: -1.40 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.96 Total: -9.95 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.04 Total: -0.01 kcal Total: -21.90 1.15 -20.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.965 kcal (2) G-P(sol) polarization free energy of solvation -21.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds