Wall clock time and date at job start Sun Mar 7 2021 08:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47399 * 2 1 4 4 C 1.50700 * 109.47034 * 240.00320 * 2 1 3 5 5 C 1.38892 * 119.67886 * 120.00225 * 4 2 1 6 6 C 1.36476 * 120.61574 * 179.97438 * 5 4 2 7 7 C 1.40065 * 119.83277 * 359.97438 * 6 5 4 8 8 C 1.41588 * 133.38199 * 179.97438 * 7 6 5 9 9 C 1.35868 * 107.72649 * 180.02562 * 8 7 6 10 10 C 1.47062 * 125.42964 * 179.97438 * 9 8 7 11 11 O 1.21651 * 119.99644 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00257 * 179.97438 * 12 10 9 14 14 H 1.08996 * 112.90441 * 23.74581 * 13 12 10 15 15 C 1.53777 * 113.61534 * 155.00011 * 13 12 10 16 16 C 1.53787 * 87.07927 * 139.98038 * 15 13 12 17 17 H 1.08999 * 113.61318 * 89.20267 * 16 15 13 18 18 C 1.50700 * 113.61241 * 220.01624 * 16 15 13 19 19 C 1.38235 * 120.00255 * 239.99922 * 18 16 15 20 20 C 1.38234 * 120.00220 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38238 * 119.99742 * 359.52139 * 21 20 19 23 23 C 1.38234 * 120.00095 * 0.43554 * 22 21 20 24 24 C 1.53777 * 87.08106 * 334.56584 * 16 15 13 25 25 N 1.38154 * 109.14560 * 0.22786 * 9 8 7 26 26 C 1.37483 * 108.78982 * 359.62016 * 25 9 8 27 27 C 1.37714 * 119.67238 * 299.97472 * 4 2 1 28 28 H 0.96707 * 113.99832 * 59.99615 * 1 2 3 29 29 H 1.09000 * 109.47024 * 119.99930 * 2 1 3 30 30 H 1.48503 * 109.99999 * 59.99946 * 3 2 1 31 31 H 1.48499 * 110.00275 * 181.31765 * 3 2 1 32 32 H 1.07995 * 119.69300 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.08250 * 179.97438 * 6 5 4 34 34 H 1.07997 * 126.13893 * 0.02562 * 8 7 6 35 35 H 0.97001 * 119.99656 * 0.02562 * 12 10 9 36 36 H 1.09000 * 113.61083 * 25.43600 * 15 13 12 37 37 H 1.08999 * 113.61494 * 254.53042 * 15 13 12 38 38 H 1.07999 * 119.99770 * 0.02562 * 19 18 16 39 39 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 41 41 H 1.08003 * 120.00356 * 180.21645 * 22 21 20 42 42 H 1.08001 * 120.00324 * 179.78922 * 23 22 21 43 43 H 1.09009 * 113.61202 * 139.97782 * 24 16 15 44 44 H 1.08996 * 113.61760 * 270.87858 * 24 16 15 45 45 H 0.97003 * 125.60267 * 179.75023 * 25 9 8 46 46 H 1.08000 * 120.10117 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7294 -0.0289 -2.1403 6 6 3.1952 -0.6537 -3.2607 7 6 2.8676 -1.9946 -3.4979 8 6 3.1826 -2.9037 -4.5367 9 6 2.5855 -4.0887 -4.2447 10 6 2.6587 -5.3056 -5.0671 11 8 3.2948 -5.3016 -6.1040 12 7 2.0210 -6.4253 -4.6721 13 6 2.0934 -7.6375 -5.4916 14 1 2.9730 -7.6627 -6.1349 15 6 1.8761 -8.9342 -4.6941 16 6 1.0523 -9.4390 -5.8906 17 1 1.6470 -9.9581 -6.6422 18 6 -0.1843 -10.2031 -5.4927 19 6 -0.3423 -11.5176 -5.8901 20 6 -1.4763 -12.2186 -5.5246 21 6 -2.4550 -11.6032 -4.7669 22 6 -2.2952 -10.2899 -4.3662 23 6 -1.1608 -9.5892 -4.7308 24 6 0.7827 -7.9629 -6.2272 25 7 1.8940 -3.9665 -3.0550 26 6 2.0586 -2.6883 -2.5763 27 6 1.5949 -2.0290 -1.4415 28 1 -0.3933 0.4418 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5616 2.4679 1.2085 31 1 3.5347 1.7702 -0.0321 32 1 2.9838 1.0050 -1.9595 33 1 3.8149 -0.1154 -3.9626 34 1 3.7888 -2.6929 -5.4054 35 1 1.5135 -6.4284 -3.8455 36 1 1.2882 -8.7953 -3.7868 37 1 2.7915 -9.5008 -4.5241 38 1 0.4206 -11.9972 -6.4853 39 1 -1.5995 -13.2458 -5.8348 40 1 -3.3431 -12.1495 -4.4851 41 1 -3.0582 -9.8101 -3.7712 42 1 -1.0375 -8.5620 -4.4207 43 1 0.8156 -7.7455 -7.2949 44 1 -0.1040 -7.5586 -5.7390 45 1 1.3786 -4.6680 -2.6268 46 1 0.9745 -2.5506 -0.7278 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:36 Heat of formation + Delta-G solvation = 50.329900 kcal Electronic energy + Delta-G solvation = -28558.144505 eV Core-core repulsion = 24573.351789 eV Total energy + Delta-G solvation = -3984.792716 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.72987 -41.44371 -40.29840 -39.05475 -38.61319 -36.87812 -34.95196 -33.28016 -31.96038 -31.74024 -30.98429 -30.40559 -27.35712 -26.75233 -25.88295 -24.34172 -23.59601 -23.23198 -22.29698 -21.93278 -21.37588 -20.47977 -19.38881 -18.43599 -18.26443 -17.74205 -17.01883 -16.86992 -16.55092 -16.41581 -16.15983 -15.93659 -15.60481 -15.47743 -15.40796 -15.09749 -14.85936 -14.69220 -14.51107 -14.32094 -14.19797 -14.12942 -13.97327 -13.50399 -13.19892 -13.14236 -12.59906 -12.57618 -12.52044 -12.35703 -12.02683 -11.87041 -11.73736 -11.64052 -11.52284 -11.28334 -10.97509 -10.42981 -10.26585 -9.83164 -9.57102 -9.33651 -8.84147 -4.93985 -0.38865 0.41485 0.48792 0.52014 0.92626 1.35030 1.68474 1.73731 1.94991 2.02680 2.14442 2.76772 2.82047 3.39051 3.48373 3.57573 3.64923 3.68849 3.70253 3.73157 3.89478 4.02660 4.03566 4.12035 4.15775 4.24845 4.27733 4.29263 4.43855 4.49791 4.52886 4.59625 4.60750 4.66964 4.69613 4.79491 4.87466 4.91683 4.97743 4.98480 5.04219 5.13165 5.17486 5.29287 5.39845 5.44737 5.53101 5.57069 5.57375 5.63391 5.71807 5.97328 6.11092 6.23454 6.41239 6.79745 6.92096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.071 4.071 3 Si 0.777 3.223 4 C -0.089 4.089 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.010 3.990 10 C 0.586 3.414 11 O -0.560 6.560 12 N -0.702 5.702 13 C 0.120 3.880 14 H 0.106 0.894 15 C -0.124 4.124 16 C -0.067 4.067 17 H 0.107 0.893 18 C -0.077 4.077 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.141 4.141 25 N -0.564 5.564 26 C 0.107 3.893 27 C -0.110 4.110 28 H 0.396 0.604 29 H 0.109 0.891 30 H -0.302 1.302 31 H -0.286 1.286 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.411 0.589 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.431 0.569 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -0.477 1.241 3.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.181 4.181 3 Si 0.683 3.317 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.100 4.100 10 C 0.374 3.626 11 O -0.438 6.438 12 N -0.352 5.352 13 C 0.015 3.985 14 H 0.124 0.876 15 C -0.162 4.162 16 C -0.086 4.086 17 H 0.125 0.875 18 C -0.077 4.077 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.180 4.180 25 N -0.170 5.170 26 C -0.003 4.003 27 C -0.131 4.131 28 H 0.246 0.754 29 H 0.127 0.873 30 H -0.230 1.230 31 H -0.213 1.213 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.272 0.728 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.013 -0.400 1.473 2.526 hybrid contribution -0.357 -1.180 0.641 1.389 sum -2.370 -1.580 2.114 3.547 Atomic orbital electron populations 1.86465 1.17106 1.82146 1.50576 1.25154 0.85324 1.10692 0.96900 0.93569 0.77943 0.75498 0.84644 1.20158 0.98166 0.93830 0.96910 1.20693 1.00436 1.00531 0.94957 1.20639 0.97889 0.91810 0.97289 1.18441 1.03410 0.95658 0.96449 1.21109 1.02229 0.91058 1.00081 1.19994 1.03701 0.96188 0.90141 1.17334 0.78774 0.82396 0.84138 1.90857 1.43566 1.84189 1.25198 1.45767 1.52116 1.10600 1.26705 1.22605 0.99280 0.82647 0.93940 0.87649 1.23414 1.00927 0.94249 0.97572 1.21308 0.94134 0.94356 0.98802 0.87484 1.19788 0.95846 0.94226 0.97812 1.21327 0.98385 0.94493 1.00566 1.21432 0.94287 1.00727 0.98394 1.21454 0.99742 0.95731 0.98666 1.21434 0.98250 0.94908 1.00115 1.21203 0.93929 1.00518 0.98649 1.23603 0.98052 0.94872 1.01456 1.41780 1.44671 1.11293 1.19267 1.18447 1.00123 0.85115 0.96630 1.19984 1.02798 0.94400 0.95874 0.75414 0.87339 1.23043 1.21281 0.83614 0.83460 0.82707 0.75212 0.88166 0.89706 0.85087 0.84984 0.85040 0.84733 0.84735 0.91285 0.88576 0.72842 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.81 12.76 -148.98 -1.90 -1.09 16 2 C -0.07 0.14 2.81 71.24 0.20 0.34 16 3 Si 0.78 -2.38 29.75 68.60 2.04 -0.34 16 4 C -0.09 0.08 5.40 -19.83 -0.11 -0.02 16 5 C -0.15 0.25 8.59 22.01 0.19 0.44 16 6 C -0.06 0.00 10.06 22.30 0.22 0.22 16 7 C -0.14 -0.45 6.16 -21.36 -0.13 -0.58 16 8 C -0.12 -0.56 10.53 22.55 0.24 -0.32 16 9 C 0.01 0.03 6.97 39.91 0.28 0.30 16 10 C 0.59 2.53 7.80 86.56 0.68 3.21 16 11 O -0.56 -7.02 16.44 -4.19 -0.07 -7.09 16 12 N -0.70 2.00 5.35 -443.65 -2.37 -0.38 16 13 C 0.12 -0.28 4.24 45.52 0.19 -0.09 16 14 H 0.11 0.17 7.46 -2.39 -0.02 0.15 16 15 C -0.12 0.68 7.30 31.12 0.23 0.91 16 16 C -0.07 0.24 3.98 -11.01 -0.04 0.20 16 17 H 0.11 -0.44 8.09 -2.39 -0.02 -0.46 16 18 C -0.08 0.06 5.29 -19.87 -0.11 -0.04 16 19 C -0.13 -0.04 9.71 22.27 0.22 0.18 16 20 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 21 C -0.14 -0.04 10.05 22.27 0.22 0.18 16 22 C -0.13 0.08 10.05 22.27 0.22 0.30 16 23 C -0.13 0.19 8.61 22.27 0.19 0.38 16 24 C -0.14 0.40 7.25 31.12 0.23 0.62 16 25 N -0.56 1.11 6.07 -177.17 -1.08 0.03 16 26 C 0.11 0.16 7.25 39.13 0.28 0.44 16 27 C -0.11 0.00 9.61 22.37 0.22 0.22 16 28 H 0.40 -3.64 8.70 -74.05 -0.64 -4.28 16 29 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H -0.30 -1.42 7.11 99.48 0.71 -0.71 16 31 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 32 H 0.15 -0.86 4.82 -2.91 -0.01 -0.87 16 33 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.41 -3.73 7.78 -92.71 -0.72 -4.45 16 36 H 0.10 -0.76 7.70 -2.39 -0.02 -0.78 16 37 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.13 -0.33 8.05 -2.91 -0.02 -0.35 16 39 H 0.13 -0.32 8.06 -2.91 -0.02 -0.35 16 40 H 0.13 -0.35 8.06 -2.91 -0.02 -0.38 16 41 H 0.13 -0.55 8.06 -2.91 -0.02 -0.57 16 42 H 0.13 -0.75 6.66 -2.91 -0.02 -0.77 16 43 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 44 H 0.10 -0.40 6.31 -2.39 -0.02 -0.41 16 45 H 0.43 -3.76 8.12 -92.71 -0.75 -4.51 16 46 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 Total: 0.00 -20.49 382.57 -0.77 -21.26 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -1.03 Total: -19.43 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 3.64 Total: 7.04 kcal Atomic # 7 Polarization: 3.10 SS G_CDS: -3.45 Total: -0.35 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.97 Total: -8.18 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.04 Total: -0.34 kcal Total: -20.49 -0.77 -21.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.590 kcal (2) G-P(sol) polarization free energy of solvation -20.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds